AT3G15358

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0003774
Physical Location & Seq
Forward (+)
5177811 .. 5178966
1156 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G15358.1

Sequence Viewer

Length: 435 bp
ATGAATTCATATCTCTTCCGCGTAATCTGTATACTCCATTCGATTATCGCACTCACAAGTGGAACTCTGATGATGTTCTACACAGAGAAAGCTTCGATCTTTGGACATGGTAGTGATATAGCAAACAAGCTCAAAGGATCAACACCTCACGACGAGCAGCTTATTCAGATTTCTCAGTCATTCTCTGGTTTGCTTCTCTTTGCTATCGGATTGGTGCTTTTCATGGTGTCGTTTGTGAAAGACAGAGAGTTTCATAGCTTCTTTGCAGCTGGTTCTGTGATTCTCTATATGGTTATGGCTTTATGGAGAGTTATGTTTGAGTGGAAGATTGAAGATCTTGCTTTTGAATGTCCCAAGCAAGCCCTTGGAGATATTGCTTTAGCTGTCTCATGGGTTTTCTTCCTCGTTTATACATGGAGAGAGAAGTATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

16.51

Weight (kDa)

6.05

Isoelectric Point (pI)

32.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7865 PF25266 1 - 132 7.6e-60 Domain of unknown function (DUF7865)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 31
AccII CGCG 1 cut(s) 21
AciI CCGC 1 cut(s) 19
AclWI GGATC 1 cut(s) 145
AcsI RAATTY 1 cut(s) 4
AgsI TTSAA 2 cut(s) 332, 347
AluBI AGCT 6 cut(s) 92, 130, 160, 258, 269, 383
AluI AGCT 6 cut(s) 92, 130, 160, 258, 269, 383
Alw26I GTCTC 1 cut(s) 391
AlwI GGATC 1 cut(s) 145
ApeKI GCWGC 2 cut(s) 157, 266
ApoI RAATTY 1 cut(s) 4
BbvI GCAGC 2 cut(s) 169, 278
BcoDI GTCTC 1 cut(s) 391
BglII AGATCT 1 cut(s) 334
BisI GCNGC 2 cut(s) 158, 267
BlsI GCNGC 2 cut(s) 159, 268
BsaJI CCNNGG 1 cut(s) 364
BseDI CCNNGG 1 cut(s) 364
BseMII CTCAG 1 cut(s) 188
BseXI GCAGC 2 cut(s) 169, 278
Bsh1236I CGCG 1 cut(s) 21
BslFI GGGAC 1 cut(s) 336
BsmAI GTCTC 1 cut(s) 391
BsmFI GGGAC 1 cut(s) 336
Bsp143I GATC 3 cut(s) 96, 137, 334
BspACI CCGC 1 cut(s) 19
BspCNI CTCAG 1 cut(s) 187
BspFNI CGCG 1 cut(s) 21
BspPI GGATC 1 cut(s) 145
BssECI CCNNGG 1 cut(s) 364
BssMI GATC 3 cut(s) 96, 137, 334
BssNAI GTATAC 1 cut(s) 32
BssT1I CCWWGG 1 cut(s) 364
Bst1107I GTATAC 1 cut(s) 32
Bst6I CTCTTC 1 cut(s) 20
BstC8I GCNNGC 1 cut(s) 360
BstDEI CTNAG 1 cut(s) 174
BstFNI CGCG 1 cut(s) 21
BstKTI GATC 3 cut(s) 99, 140, 337
BstMAI GTCTC 1 cut(s) 391
BstMBI GATC 3 cut(s) 96, 137, 334
BstUI CGCG 1 cut(s) 21
BstV1I GCAGC 2 cut(s) 169, 278
BstX2I RGATCY 1 cut(s) 334
BstYI RGATCY 1 cut(s) 334
BstZ17I GTATAC 1 cut(s) 32
Cac8I GCNNGC 1 cut(s) 360
CviAII CATG 4 cut(s) 107, 223, 390, 414
CviJI RGCY 8 cut(s) 92, 130, 160, 258, 269, 299, 362, 383
CviKI_1 RGCY 8 cut(s) 92, 130, 160, 258, 269, 299, 362, 383
DdeI CTNAG 1 cut(s) 174
DpnI GATC 3 cut(s) 98, 139, 336
DpnII GATC 3 cut(s) 96, 137, 334
Eam1104I CTCTTC 1 cut(s) 20
EarI CTCTTC 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 364
EcoRI GAATTC 1 cut(s) 4
EcoT14I CCWWGG 1 cut(s) 364
ErhI CCWWGG 1 cut(s) 364
FaeI CATG 4 cut(s) 110, 226, 393, 417
FaqI GGGAC 1 cut(s) 336
FatI CATG 4 cut(s) 106, 222, 389, 413
FblI GTMKAC 1 cut(s) 31
Fnu4HI GCNGC 2 cut(s) 158, 267
Fsp4HI GCNGC 2 cut(s) 158, 267
GluI GCNGC 2 cut(s) 158, 267
Hin1II CATG 4 cut(s) 110, 226, 393, 417
HindIII AAGCTT 1 cut(s) 90
HinfI GANTC 1 cut(s) 280
Hpy166II GTNNAC 1 cut(s) 32
Hpy188I TCNGA 3 cut(s) 69, 168, 209
Hpy188III TCNNGA 1 cut(s) 149
Hpy8I GTNNAC 1 cut(s) 32
Hpy99I CGWCG 1 cut(s) 155
HpyCH4V TGCA 1 cut(s) 266
HpyF3I CTNAG 1 cut(s) 174
Hsp92II CATG 4 cut(s) 110, 226, 393, 417
Kzo9I GATC 3 cut(s) 96, 137, 334
LpnPI CCDG 2 cut(s) 171, 255
Lsp1109I GCAGC 2 cut(s) 169, 278
MalI GATC 3 cut(s) 98, 139, 336
MboI GATC 3 cut(s) 96, 137, 334
MboII GAAGA 4 cut(s) 7, 337, 344, 391
MflI RGATCY 1 cut(s) 334
MluCI AATT 1 cut(s) 4
MnlI CCTC 2 cut(s) 156, 413
MslI CAYNNNNRTG 1 cut(s) 111
MspA1I CMGCKG 1 cut(s) 269
MvnI CGCG 1 cut(s) 21
NdeII GATC 3 cut(s) 96, 137, 334
NlaIII CATG 4 cut(s) 110, 226, 393, 417
PfeI GAWTC 1 cut(s) 280
PkrI GCNGC 2 cut(s) 159, 268
PsuI RGATCY 1 cut(s) 334
PvuII CAGCTG 1 cut(s) 269
RseI CAYNNNNRTG 1 cut(s) 111
SatI GCNGC 2 cut(s) 158, 267
Sau3AI GATC 3 cut(s) 96, 137, 334
SetI ASST 7 cut(s) 94, 132, 148, 162, 260, 271, 385
SmiMI CAYNNNNRTG 1 cut(s) 111
Sse9I AATT 1 cut(s) 4
SsiI CCGC 1 cut(s) 19
StyI CCWWGG 1 cut(s) 364
TaqI TCGA 2 cut(s) 41, 95
TasI AATT 1 cut(s) 4
TfiI GAWTC 1 cut(s) 280
TseI GCWGC 2 cut(s) 157, 266
TspDTI ATGAA 3 cut(s) 17, 211, 242
XapI RAATTY 1 cut(s) 4
XmiI GTMKAC 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.