Rroxscaffold_1G00068030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0003774
Physical Location & Seq
Forward (+)
89363110 .. 89363743
634 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00068030.1

Sequence Viewer

Length: 366 bp
ATGATGTTCTACATGTCGGATCTGTACACCTTGGGGCACGGAGTCGAGACGGCGCAGAAGCTTCTCGGGTCGACGCCGCACGACCAGCTCCTGATCCGGACCTCCGACTCGTTCTCCGGGTTGCTCCTCTTCGCGATCGGGTTCCTGCTCCTCATGGTCTCCTTCGTCAGAGATCGCGAGTTCCAGAGCTTCTTCGCCAAGGGCTGCACGCTCCTCCATGTCTTCATGGGCCTCTGGCGCTGCTACTTCGAGCGCAGGGTCGAGGATCTCGCCTGGGATTGGCTCCGGCAGACCGTCGGCGACGTCGTTTTGGCCCTCTCTTGGGTCTTCTTCCTTGTGTACTCGTGGAGAGAAAAGTACGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

14.3

Weight (kDa)

5.86

Isoelectric Point (pI)

36.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7865 PF25266 1 - 109 3.6e-58 Domain of unknown function (DUF7865)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 306
AccI GTMKAC 1 cut(s) 71
AccII CGCG 2 cut(s) 134, 177
AccIII TCCGGA 1 cut(s) 96
AciI CCGC 1 cut(s) 77
AclWI GGATC 3 cut(s) 27, 88, 273
AcyI GRCGYC 2 cut(s) 74, 303
AfaI GTAC 3 cut(s) 26, 341, 359
AfiI CCNNNNNNNGG 3 cut(s) 279, 321, 322
AflIII ACRYGT 1 cut(s) 12
AjnI CCWGG 1 cut(s) 272
AluBI AGCT 3 cut(s) 61, 88, 189
AluI AGCT 3 cut(s) 61, 88, 189
Alw26I GTCTC 2 cut(s) 41, 163
AlwI GGATC 3 cut(s) 27, 88, 273
AlwNI CAGNNNCTG 1 cut(s) 91
Ama87I CYCGRG 1 cut(s) 65
Aor13HI TCCGGA 1 cut(s) 96
AoxI GGCC 2 cut(s) 229, 312
ApeKI GCWGC 2 cut(s) 204, 240
AspLEI GCGC 3 cut(s) 55, 240, 255
AspS9I GGNCC 3 cut(s) 99, 229, 313
AsuC2I CCSGG 1 cut(s) 118
AvaI CYCGRG 1 cut(s) 65
AvaII GGWCC 1 cut(s) 99
BaeGI GKGCMC 1 cut(s) 39
BauI CACGAG 1 cut(s) 343
BbsI GAAGAC 2 cut(s) 214, 319
BbvI GCAGC 2 cut(s) 191, 227
BceAI ACGGC 1 cut(s) 66
BciT130I CCWGG 1 cut(s) 274
BcnI CCSGG 1 cut(s) 118
BcoDI GTCTC 2 cut(s) 41, 163
BfoI RGCGCY 1 cut(s) 241
BisI GCNGC 3 cut(s) 77, 205, 241
BlsI GCNGC 3 cut(s) 78, 206, 242
Bme1390I CCNGG 2 cut(s) 118, 274
Bme18I GGWCC 1 cut(s) 99
BmeT110I CYCGRG 1 cut(s) 65
BmgT120I GGNCC 3 cut(s) 99, 229, 313
BmiI GGNNCC 2 cut(s) 143, 284
BmrFI CCNGG 2 cut(s) 118, 274
BpiI GAAGAC 2 cut(s) 214, 319
BpuMI CCSGG 1 cut(s) 118
BsaHI GRCGYC 2 cut(s) 74, 303
BsaI GGTCTC 1 cut(s) 163
BsaJI CCNNGG 3 cut(s) 30, 198, 273
BsaWI WCCGGW 1 cut(s) 96
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bsc4I CCNNNNNNNGG 3 cut(s) 279, 321, 322
BseAI TCCGGA 1 cut(s) 96
BseBI CCWGG 1 cut(s) 274
BseDI CCNNGG 3 cut(s) 30, 198, 273
BseLI CCNNNNNNNGG 3 cut(s) 279, 321, 322
BseRI GAGGAG 3 cut(s) 116, 140, 203
BseSI GKGCMC 1 cut(s) 39
BseXI GCAGC 2 cut(s) 191, 227
BsgI GTGCAG 1 cut(s) 190
Bsh1236I CGCG 2 cut(s) 134, 177
Bsh1285I CGRYCG 1 cut(s) 138
BshFI GGCC 2 cut(s) 231, 314
BsiEI CGRYCG 1 cut(s) 138
BsiHKCI CYCGRG 1 cut(s) 65
BsiSI CCGG 3 cut(s) 97, 117, 286
BslI CCNNNNNNNGG 3 cut(s) 279, 321, 322
BsmAI GTCTC 2 cut(s) 41, 163
BsmBI CGTCTC 1 cut(s) 41
BsnI GGCC 2 cut(s) 231, 314
Bso31I GGTCTC 1 cut(s) 163
BsoBI CYCGRG 1 cut(s) 65
Bsp1286I GDGCHC 1 cut(s) 39
Bsp13I TCCGGA 1 cut(s) 96
Bsp1407I TGTACA 1 cut(s) 24
Bsp143I GATC 5 cut(s) 19, 93, 135, 172, 265
Bsp68I TCGCGA 2 cut(s) 134, 177
BspACI CCGC 1 cut(s) 77
BspANI GGCC 2 cut(s) 231, 314
BspEI TCCGGA 1 cut(s) 96
BspFNI CGCG 2 cut(s) 134, 177
BspLI GGNNCC 2 cut(s) 143, 284
BspPI GGATC 3 cut(s) 27, 88, 273
BspTNI GGTCTC 1 cut(s) 163
BsrGI TGTACA 1 cut(s) 24
BssECI CCNNGG 3 cut(s) 30, 198, 273
BssMI GATC 5 cut(s) 19, 93, 135, 172, 265
BssNI GRCGYC 2 cut(s) 74, 303
BssSI CACGAG 1 cut(s) 343
BssT1I CCWWGG 2 cut(s) 30, 198
Bst2BI CACGAG 1 cut(s) 343
Bst2UI CCWGG 1 cut(s) 274
Bst4CI ACNGT 1 cut(s) 295
Bst6I CTCTTC 1 cut(s) 134
BstACI GRCGYC 2 cut(s) 74, 303
BstAUI TGTACA 1 cut(s) 24
BstC8I GCNNGC 1 cut(s) 209
BstFNI CGCG 2 cut(s) 134, 177
BstH2I RGCGCY 1 cut(s) 241
BstHHI GCGC 3 cut(s) 55, 240, 255
BstKTI GATC 5 cut(s) 22, 96, 138, 175, 268
BstMAI GTCTC 2 cut(s) 41, 163
BstMBI GATC 5 cut(s) 19, 93, 135, 172, 265
BstMCI CGRYCG 1 cut(s) 138
BstMWI GCNNNNNNNGC 2 cut(s) 85, 237
BstNI CCWGG 1 cut(s) 274
BstNSI RCATGY 1 cut(s) 16
BstSCI CCNGG 2 cut(s) 116, 272
BstSLI GKGCMC 1 cut(s) 39
BstUI CGCG 2 cut(s) 134, 177
BstV1I GCAGC 2 cut(s) 191, 227
BstV2I GAAGAC 2 cut(s) 214, 319
BstX2I RGATCY 2 cut(s) 19, 265
BstYI RGATCY 2 cut(s) 19, 265
BsuRI GGCC 2 cut(s) 231, 314
BtuMI TCGCGA 2 cut(s) 134, 177
Cac8I GCNNGC 1 cut(s) 209
CaiI CAGNNNCTG 1 cut(s) 91
CfoI GCGC 3 cut(s) 55, 240, 255
Cfr13I GGNCC 3 cut(s) 99, 229, 313
CseI GACGC 1 cut(s) 82
Csp6I GTAC 3 cut(s) 25, 340, 358
CviAII CATG 4 cut(s) 13, 154, 218, 226
CviJI RGCY 7 cut(s) 61, 88, 189, 204, 231, 283, 314
CviKI_1 RGCY 7 cut(s) 61, 88, 189, 204, 231, 283, 314
CviQI GTAC 3 cut(s) 25, 340, 358
DpnI GATC 5 cut(s) 21, 95, 137, 174, 267
DpnII GATC 5 cut(s) 19, 93, 135, 172, 265
Eam1104I CTCTTC 1 cut(s) 134
EarI CTCTTC 1 cut(s) 134
Eco130I CCWWGG 2 cut(s) 30, 198
Eco31I GGTCTC 1 cut(s) 163
Eco47I GGWCC 1 cut(s) 99
Eco88I CYCGRG 1 cut(s) 65
EcoRII CCWGG 1 cut(s) 272
EcoT14I CCWWGG 2 cut(s) 30, 198
ErhI CCWWGG 2 cut(s) 30, 198
Esp3I CGTCTC 1 cut(s) 41
FaeI CATG 4 cut(s) 16, 157, 221, 229
FaiI YATR 4 cut(s) 14, 155, 219, 227
FatI CATG 4 cut(s) 12, 153, 217, 225
FblI GTMKAC 1 cut(s) 71
Fnu4HI GCNGC 3 cut(s) 77, 205, 241
Fsp4HI GCNGC 3 cut(s) 77, 205, 241
GlaI GCGC 3 cut(s) 54, 239, 254
GluI GCNGC 3 cut(s) 77, 205, 241
HaeII RGCGCY 1 cut(s) 241
HaeIII GGCC 2 cut(s) 231, 314
HapII CCGG 3 cut(s) 97, 117, 286
HgaI GACGC 1 cut(s) 82
HhaI GCGC 3 cut(s) 55, 240, 255
Hin1I GRCGYC 2 cut(s) 74, 303
Hin1II CATG 4 cut(s) 16, 157, 221, 229
Hin6I GCGC 3 cut(s) 53, 238, 253
HinP1I GCGC 3 cut(s) 53, 238, 253
HincII GTYRAC 1 cut(s) 72
HindII GTYRAC 1 cut(s) 72
HindIII AAGCTT 1 cut(s) 59
HinfI GANTC 2 cut(s) 42, 107
HpaII CCGG 3 cut(s) 97, 117, 286
Hpy166II GTNNAC 3 cut(s) 27, 72, 340
Hpy188I TCNGA 3 cut(s) 19, 106, 170
Hpy188III TCNNGA 6 cut(s) 46, 91, 97, 133, 176, 184
Hpy8I GTNNAC 3 cut(s) 27, 72, 340
Hpy99I CGWCG 4 cut(s) 76, 299, 305, 308
HpyAV CCTTC 1 cut(s) 172
HpyCH4III ACNGT 1 cut(s) 295
HpyCH4IV ACGT 1 cut(s) 303
HpyCH4V TGCA 1 cut(s) 207
HpyF10VI GCNNNNNNNGC 2 cut(s) 85, 237
HpySE526I ACGT 1 cut(s) 303
Hsp92I GRCGYC 2 cut(s) 74, 303
Hsp92II CATG 4 cut(s) 16, 157, 221, 229
HspAI GCGC 3 cut(s) 53, 238, 253
Kpn2I TCCGGA 1 cut(s) 96
Kzo9I GATC 5 cut(s) 19, 93, 135, 172, 265
LmnI GCTCC 5 cut(s) 93, 129, 153, 216, 288
Lsp1109I GCAGC 2 cut(s) 191, 227
MaeII ACGT 1 cut(s) 303
MalI GATC 5 cut(s) 21, 95, 137, 174, 267
MboI GATC 5 cut(s) 19, 93, 135, 172, 265
MboII GAAGA 5 cut(s) 121, 184, 214, 319, 322
MflI RGATCY 2 cut(s) 19, 265
MhlI GDGCHC 1 cut(s) 39
MlyI GAGTC 2 cut(s) 51, 101
MmeI TCCRAC 1 cut(s) 129
MnlI CCTC 7 cut(s) 112, 137, 161, 224, 242, 256, 326
MroI TCCGGA 1 cut(s) 96
MseI TTAA 1 cut(s) 364
MspI CCGG 3 cut(s) 97, 117, 286
MspR9I CCNGG 2 cut(s) 118, 274
MvaI CCWGG 1 cut(s) 274
MvnI CGCG 2 cut(s) 134, 177
MwoI GCNNNNNNNGC 2 cut(s) 85, 237
NciI CCSGG 1 cut(s) 118
NdeII GATC 5 cut(s) 19, 93, 135, 172, 265
NlaIII CATG 4 cut(s) 16, 157, 221, 229
NlaIV GGNNCC 2 cut(s) 143, 284
NruI TCGCGA 2 cut(s) 134, 177
NspI RCATGY 1 cut(s) 16
PciI ACATGT 1 cut(s) 12
PcsI WCGNNNNNNNCGW 1 cut(s) 303
PkrI GCNGC 3 cut(s) 78, 206, 242
Ple19I CGATCG 1 cut(s) 138
PleI GAGTC 2 cut(s) 50, 101
PpsI GAGTC 2 cut(s) 50, 101
PscI ACATGT 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 272
PspGI CCWGG 1 cut(s) 272
PspN4I GGNNCC 2 cut(s) 143, 284
PspPI GGNCC 3 cut(s) 99, 229, 313
PstNI CAGNNNCTG 1 cut(s) 91
PsuI RGATCY 2 cut(s) 19, 265
PvuI CGATCG 1 cut(s) 138
RruI TCGCGA 2 cut(s) 134, 177
RsaI GTAC 3 cut(s) 26, 341, 359
RsaNI GTAC 3 cut(s) 25, 340, 358
SalI GTCGAC 1 cut(s) 70
SaqAI TTAA 1 cut(s) 364
SatI GCNGC 3 cut(s) 77, 205, 241
Sau3AI GATC 5 cut(s) 19, 93, 135, 172, 265
Sau96I GGNCC 3 cut(s) 99, 229, 313
SchI GAGTC 2 cut(s) 51, 101
ScrFI CCNGG 2 cut(s) 118, 274
SduI GDGCHC 1 cut(s) 39
SetI ASST 6 cut(s) 32, 63, 90, 104, 191, 306
SinI GGWCC 1 cut(s) 99
SsiI CCGC 1 cut(s) 77
StyD4I CCNGG 2 cut(s) 116, 272
StyI CCWWGG 2 cut(s) 30, 198
TaaI ACNGT 1 cut(s) 295
TaiI ACGT 1 cut(s) 306
TaqI TCGA 4 cut(s) 45, 71, 249, 261
TatI WGTACW 2 cut(s) 24, 339
TauI GCSGC 1 cut(s) 79
Tru1I TTAA 1 cut(s) 364
Tru9I TTAA 1 cut(s) 364
TseI GCWGC 2 cut(s) 204, 240
TspDTI ATGAA 1 cut(s) 214
TspGWI ACGGA 1 cut(s) 54
VpaK11BI GGWCC 1 cut(s) 99
XceI RCATGY 1 cut(s) 16
XmiI GTMKAC 1 cut(s) 71
ZraI GACGTC 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.