Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003774

Physical Location & Seq

Genomic Coordinates Forward (+)

13108497 .. 13110404

Gene Structure 1908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g19950.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGGGTTATCTGGGTTCTTCTTGATTAGTATGCTCCACTCTGGTATATGTCTCGTAAGTGGAGCTTTCATGATGTTCTACTCCAATGAATTCTCTGTGTTCAATCATGGCCTTGAGACAGCAAGTAAGCTTCAAGGGTCAACACCTCATGATCAACTCTTGATCCAAACTTCAAGTTCCTTCTCGGGTTGGCTTCTGTTTGCCATTGGGTTTCTTCTGTTCATGGTGGCTTTTGTCAAGGACGCTAAATTCCAGAGCTTCTTTGCTAAAGGGTGTGTGTTGCTTCACATTTTCATGGCTATTTGGAGAGTTTACTTTGTGAGGGAAGTTGAAGACCTTGCCAGAGATTGGCCTAAGCAGGTCCTCGGAGACATCACGTTGGCGCTTTCCTGGGTTTTTCTTCTCATGTATTCATGGAGGGAGAAGCCTTTAGCTGCTGCTACTATAAATTCGGGTGCAGCCTCTGTTCTTGTTGCAGAAGCTTATGCCTTAAGGGGCTGCCTTAAGATGGCTCTTGACAAGGGCTTCACAAACCTAGAGGTGGAAGGTGACTCCAAATTAGTAATTGATGTTGTCAATGGCACTACCTCCCCTCCATGGAGACTAATCAAGCTTGTCCAAGACATCAAAACTTTGGCTTCGTACTTTGATCATATCTCCTTCTCCCATGTTTTGAGGGAGGCCAACTTTGCTATTGATAGTTTAGCAAGTTCAGGACATAATCCTGCAAATGTAGCTTCTTGGGAGAATATAGTTCCTAATGTGCCTTATACAGCTCTTCTCTTCGACATTGTAAACTCAGAATTCCCTCGCAGCTTCTCTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

276

Amino Acids

30.58

Weight (kDa)

5.95

Isoelectric Point (pI)

31.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7865	PF25266	2 - 132	3.8e-63	Domain of unknown function (DUF7865)
RVT_3	PF13456	150 - 238	5.7e-17	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53035 AT1G53035 AT3G15358
fragaria_vesca	FvH4_3g09111 FvH4_3g09112 FvH4_3g19950
malus_domestica	MD02G1012100.v1.1 MD03G1227700.v1.1 MD10G1293900.v1.1 MD11G1247000.v1.1
prunus_persica	Prupe.4G047900_v2.0.a1 Prupe.4G047900_v2.0.a1 Prupe.4G181300_v2.0.a1
pyrus_communis	pycom05g29020
rosa_chinensis	RchiOBHm_Chr5g0008521 RchiOBHm_Chr5g0033631
rosa_laevigata	RLG00000031577 RLG00000033495
rosa_multiflora	Rmu_sc0001768.1_g000022
rosa_roxburghii	Rroxscaffold_1G00046450 Rroxscaffold_1G00068030
rosa_rugosa	Rorug04G0436600 Rorug05G0141500
rosa_samantha	Rh5AG065100 Rh5AG232400 Rh5BG062600 Rh5BG233100 Rh5CG072500 Rh5CG262000 Rh5DG063600 Rh5DG238700
rosa_wichuraiana	Rw5G005570 Rw5G021210 Rw5G021620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	349
AccB7I	CCANNNNNTGG	1 cut(s)	348
AclWI	GGATC	1 cut(s)	157
AcsI	RAATTY	4 cut(s)	89, 248, 448, 803
AfaI	GTAC	1 cut(s)	644
AfiI	CCNNNNNNNGG	4 cut(s)	348, 508, 541, 597
AflII	CTTAAG	2 cut(s)	490, 503
AgsI	TTSAA	4 cut(s)	103, 134, 174, 332
AjnI	CCWGG	1 cut(s)	389
AluBI	AGCT	9 cut(s)	65, 130, 258, 434, 482, 613, 737, 776, 816
AluI	AGCT	9 cut(s)	65, 130, 258, 434, 482, 613, 737, 776, 816
Alw26I	GTCTC	4 cut(s)	56, 110, 363, 595
AlwI	GGATC	1 cut(s)	157
AlwNI	CAGNNNCTG	1 cut(s)	464
Ama87I	CYCGRG	1 cut(s)	184
AoxI	GGCC	3 cut(s)	109, 350, 681
ApeKI	GCWGC	5 cut(s)	434, 437, 458, 498, 813
ApoI	RAATTY	4 cut(s)	89, 248, 448, 803
AspLEI	GCGC	1 cut(s)	385
AspS9I	GGNCC	1 cut(s)	361
AsuHPI	GGTGA	1 cut(s)	560
AvaI	CYCGRG	1 cut(s)	184
AvaII	GGWCC	1 cut(s)	361
BbsI	GAAGAC	1 cut(s)	339
BbvI	GCAGC	4 cut(s)	421, 424, 470, 485
BccI	CCATC	1 cut(s)	502
BciT130I	CCWGG	1 cut(s)	391
BclI	TGATCA	2 cut(s)	151, 649
BcoDI	GTCTC	4 cut(s)	56, 110, 363, 595
BfaI	CTAG	1 cut(s)	536
BfoI	RGCGCY	1 cut(s)	386
BfrI	CTTAAG	2 cut(s)	490, 503
BfuAI	ACCTGC	1 cut(s)	349
BisI	GCNGC	5 cut(s)	435, 438, 459, 499, 814
BlsI	GCNGC	5 cut(s)	436, 439, 460, 500, 815
Bme1390I	CCNGG	1 cut(s)	391
Bme18I	GGWCC	1 cut(s)	361
BmeT110I	CYCGRG	1 cut(s)	184
BmgT120I	GGNCC	1 cut(s)	361
BmrFI	CCNGG	1 cut(s)	391
BpiI	GAAGAC	1 cut(s)	339
Bpu10I	CCTNAGC	1 cut(s)	354
BpuEI	CTTGAG	1 cut(s)	134
BsaJI	CCNNGG	3 cut(s)	364, 390, 596
BsaXI	ACNNNNNCTCC	2 cut(s)	577, 607
Bsc4I	CCNNNNNNNGG	4 cut(s)	348, 508, 541, 597
BseBI	CCWGG	1 cut(s)	391
BseDI	CCNNGG	3 cut(s)	364, 390, 596
BseLI	CCNNNNNNNGG	4 cut(s)	348, 508, 541, 597
BseMII	CTCAG	1 cut(s)	813
BseXI	GCAGC	4 cut(s)	421, 424, 470, 485
BsgI	GTGCAG	1 cut(s)	477
BshFI	GGCC	3 cut(s)	111, 352, 683
BsiHKCI	CYCGRG	1 cut(s)	184
BslI	CCNNNNNNNGG	4 cut(s)	348, 508, 541, 597
BsmAI	GTCTC	4 cut(s)	56, 110, 363, 595
BsnI	GGCC	3 cut(s)	111, 352, 683
BsoBI	CYCGRG	1 cut(s)	184
Bsp143I	GATC	3 cut(s)	151, 162, 649
Bsp19I	CCATGG	1 cut(s)	596
BspANI	GGCC	3 cut(s)	111, 352, 683
BspCNI	CTCAG	1 cut(s)	812
BspHI	TCATGA	2 cut(s)	69, 148
BspMI	ACCTGC	1 cut(s)	349
BspPI	GGATC	1 cut(s)	157
BspQI	GCTCTTC	1 cut(s)	783
BspTI	CTTAAG	2 cut(s)	490, 503
BssECI	CCNNGG	3 cut(s)	364, 390, 596
BssMI	GATC	3 cut(s)	151, 162, 649
BssT1I	CCWWGG	1 cut(s)	596
Bst2UI	CCWGG	1 cut(s)	391
Bst6I	CTCTTC	2 cut(s)	783, 788
BstAFI	CTTAAG	2 cut(s)	490, 503
BstDEI	CTNAG	2 cut(s)	354, 799
BstDSI	CCRYGG	1 cut(s)	596
BstH2I	RGCGCY	1 cut(s)	386
BstHHI	GCGC	1 cut(s)	385
BstKTI	GATC	3 cut(s)	154, 165, 652
BstMAI	GTCTC	4 cut(s)	56, 110, 363, 595
BstMBI	GATC	3 cut(s)	151, 162, 649
BstMWI	GCNNNNNNNGC	2 cut(s)	689, 734
BstNI	CCWGG	1 cut(s)	391
BstSCI	CCNGG	1 cut(s)	389
BstV1I	GCAGC	4 cut(s)	421, 424, 470, 485
BstV2I	GAAGAC	1 cut(s)	339
BsuRI	GGCC	3 cut(s)	111, 352, 683
BtgI	CCRYGG	1 cut(s)	596
BveI	ACCTGC	1 cut(s)	349
CaiI	CAGNNNCTG	1 cut(s)	464
CciI	TCATGA	2 cut(s)	69, 148
CfoI	GCGC	1 cut(s)	385
Cfr13I	GGNCC	1 cut(s)	361
CseI	GACGC	1 cut(s)	251
Csp6I	GTAC	1 cut(s)	643
CviAII	CATG	9 cut(s)	70, 107, 149, 223, 295, 406, 414, 597, 668
CviQI	GTAC	1 cut(s)	643
DdeI	CTNAG	2 cut(s)	354, 799
DpnI	GATC	3 cut(s)	153, 164, 651
DpnII	GATC	3 cut(s)	151, 162, 649
Eam1104I	CTCTTC	2 cut(s)	783, 788
EarI	CTCTTC	2 cut(s)	783, 788
Eco130I	CCWWGG	1 cut(s)	596
Eco47I	GGWCC	1 cut(s)	361
Eco88I	CYCGRG	1 cut(s)	184
EcoO109I	RGGNCCY	1 cut(s)	361
EcoRI	GAATTC	2 cut(s)	89, 803
EcoRII	CCWGG	1 cut(s)	389
EcoT14I	CCWWGG	1 cut(s)	596
ErhI	CCWWGG	1 cut(s)	596
FaeI	CATG	9 cut(s)	73, 110, 152, 226, 298, 409, 417, 600, 671
FalI	AAGNNNNNCTT	2 cut(s)	49, 81
FatI	CATG	9 cut(s)	69, 106, 148, 222, 294, 405, 413, 596, 667
FbaI	TGATCA	2 cut(s)	151, 649
Fnu4HI	GCNGC	5 cut(s)	435, 438, 459, 499, 814
Fsp4HI	GCNGC	5 cut(s)	435, 438, 459, 499, 814
FspBI	CTAG	1 cut(s)	536
GlaI	GCGC	1 cut(s)	384
GluI	GCNGC	5 cut(s)	435, 438, 459, 499, 814
HaeII	RGCGCY	1 cut(s)	386
HaeIII	GGCC	3 cut(s)	111, 352, 683
HgaI	GACGC	1 cut(s)	251
HhaI	GCGC	1 cut(s)	385
Hin1II	CATG	9 cut(s)	73, 110, 152, 226, 298, 409, 417, 600, 671
Hin6I	GCGC	1 cut(s)	383
HinP1I	GCGC	1 cut(s)	383
HincII	GTYRAC	1 cut(s)	141
HindII	GTYRAC	1 cut(s)	141
HindIII	AAGCTT	3 cut(s)	128, 480, 611
HinfI	GANTC	1 cut(s)	551
HphI	GGTGA	1 cut(s)	560
Hpy166II	GTNNAC	3 cut(s)	141, 313, 796
Hpy188I	TCNGA	2 cut(s)	368, 802
Hpy188III	TCNNGA	7 cut(s)	22, 70, 149, 160, 253, 515, 714
Hpy8I	GTNNAC	3 cut(s)	141, 313, 796
HpyAV	CCTTC	3 cut(s)	190, 539, 670
HpyCH4IV	ACGT	1 cut(s)	377
HpyCH4V	TGCA	3 cut(s)	458, 476, 728
HpyF10VI	GCNNNNNNNGC	2 cut(s)	689, 734
HpyF3I	CTNAG	2 cut(s)	354, 799
HpySE526I	ACGT	1 cut(s)	377
Hsp92II	CATG	9 cut(s)	73, 110, 152, 226, 298, 409, 417, 600, 671
HspAI	GCGC	1 cut(s)	383
Ksp22I	TGATCA	2 cut(s)	151, 649
Kzo9I	GATC	3 cut(s)	151, 162, 649
LguI	GCTCTTC	1 cut(s)	783
LmnI	GCTCC	2 cut(s)	39, 62
LpnPI	CCDG	8 cut(s)	27, 266, 344, 355, 376, 403, 699, 738
Lsp1109I	GCAGC	4 cut(s)	421, 424, 470, 485
MaeI	CTAG	1 cut(s)	536
MaeII	ACGT	1 cut(s)	377
MaeIII	GTNAC	1 cut(s)	548
MalI	GATC	3 cut(s)	153, 164, 651
MboI	GATC	3 cut(s)	151, 162, 649
MboII	GAAGA	6 cut(s)	10, 206, 344, 392, 770, 775
MluCI	AATT	6 cut(s)	89, 248, 448, 557, 564, 803
MlyI	GAGTC	1 cut(s)	545
MseI	TTAA	3 cut(s)	491, 504, 826
MslI	CAYNNNNRTG	1 cut(s)	293
MspCI	CTTAAG	2 cut(s)	490, 503
MspR9I	CCNGG	1 cut(s)	391
MvaI	CCWGG	1 cut(s)	391
MwoI	GCNNNNNNNGC	2 cut(s)	689, 734
NcoI	CCATGG	1 cut(s)	596
NdeII	GATC	3 cut(s)	151, 162, 649
NlaIII	CATG	9 cut(s)	73, 110, 152, 226, 298, 409, 417, 600, 671
NmuCI	GTSAC	1 cut(s)	548
PagI	TCATGA	2 cut(s)	69, 148
PciSI	GCTCTTC	1 cut(s)	783
PflMI	CCANNNNNTGG	1 cut(s)	348
PkrI	GCNGC	5 cut(s)	436, 439, 460, 500, 815
PleI	GAGTC	1 cut(s)	545
PpsI	GAGTC	1 cut(s)	545
PpuMI	RGGWCCY	1 cut(s)	361
Psp5II	RGGWCCY	1 cut(s)	361
Psp6I	CCWGG	1 cut(s)	389
PspGI	CCWGG	1 cut(s)	389
PspPI	GGNCC	1 cut(s)	361
PspPPI	RGGWCCY	1 cut(s)	361
PstNI	CAGNNNCTG	1 cut(s)	464
RsaI	GTAC	1 cut(s)	644
RsaNI	GTAC	1 cut(s)	643
RseI	CAYNNNNRTG	1 cut(s)	293
SapI	GCTCTTC	1 cut(s)	783
SaqAI	TTAA	3 cut(s)	491, 504, 826
SatI	GCNGC	5 cut(s)	435, 438, 459, 499, 814
Sau3AI	GATC	3 cut(s)	151, 162, 649
Sau96I	GGNCC	1 cut(s)	361
SchI	GAGTC	1 cut(s)	545
ScrFI	CCNGG	1 cut(s)	391
SinI	GGWCC	1 cut(s)	361
SmiMI	CAYNNNNRTG	1 cut(s)	293
SmlI	CTYRAG	3 cut(s)	113, 490, 503
SmoI	CTYRAG	3 cut(s)	113, 490, 503
Sse9I	AATT	6 cut(s)	89, 248, 448, 557, 564, 803
SspMI	CTAG	1 cut(s)	536
StyD4I	CCNGG	1 cut(s)	389
StyI	CCWWGG	1 cut(s)	596
TaiI	ACGT	1 cut(s)	380
TaqI	TCGA	1 cut(s)	786
TasI	AATT	6 cut(s)	89, 248, 448, 557, 564, 803
Tru1I	TTAA	3 cut(s)	491, 504, 826
Tru9I	TTAA	3 cut(s)	491, 504, 826
TseFI	GTSAC	1 cut(s)	548
TseI	GCWGC	5 cut(s)	434, 437, 458, 498, 813
Tsp45I	GTSAC	1 cut(s)	548
TspDTI	ATGAA	5 cut(s)	58, 102, 211, 283, 402
Van91I	CCANNNNNTGG	1 cut(s)	348
Vha464I	CTTAAG	2 cut(s)	490, 503
VpaK11BI	GGWCC	1 cut(s)	361
XapI	RAATTY	4 cut(s)	89, 248, 448, 803
XspI	CTAG	1 cut(s)	536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.