Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003774

Physical Location & Seq

Genomic Coordinates Reverse (-)

2286615 .. 2288489

Gene Structure 1875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G047900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGTCATCGCCCTCGTCGTCAGCTTTCTTCGTCATCTGCCTCCTCCACTCTGCAATAGCCATAACCTGTGGGGCCCTTATGATGTTCTACATGATGGAAATCTACACCTTCGGGCACGGGATCGAGACTGCGAAGAAGCTGCTGGGGTCCACGCCCCACGACCAGCTCTTGATTCGGACCTCTGATTCCTTCTCCGGGTTGCTCCTGTTCGCGATCGGGTTCTTGCTGCTCATGGTGTCGTTCGTGAAGGATCGCGAGTTCCAGAGCTTCTTCGCCAAAGGGTGCACGGTGCTGCATGTTTTCATGGCGCTGTGGCGATGCTACTTCGAGCGGAGGGTGGAGGACCTCGCTTGGGATTGGCTGAGGCAGACAGTCGGCGATGTAGTGTTGGCAGCCTCTTGGGTTTTCTTCCTTGTTTTCTCATGGAGAGAAAAGTACGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

148

Amino Acids

16.93

Weight (kDa)

6.4

Isoelectric Point (pI)

46.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53035 AT1G53035 AT3G15358
fragaria_vesca	FvH4_3g09111 FvH4_3g09112 FvH4_3g19950
malus_domestica	MD02G1012100.v1.1 MD03G1227700.v1.1 MD10G1293900.v1.1 MD11G1247000.v1.1
prunus_persica	Prupe.4G047900_v2.0.a1 Prupe.4G047900_v2.0.a1 Prupe.4G181300_v2.0.a1
pyrus_communis	pycom05g29020
rosa_chinensis	RchiOBHm_Chr5g0008521 RchiOBHm_Chr5g0033631
rosa_laevigata	RLG00000031577 RLG00000033495
rosa_multiflora	Rmu_sc0001768.1_g000022
rosa_roxburghii	Rroxscaffold_1G00046450 Rroxscaffold_1G00068030
rosa_rugosa	Rorug04G0436600 Rorug05G0141500
rosa_samantha	Rh5AG065100 Rh5AG232400 Rh5BG062600 Rh5BG233100 Rh5CG072500 Rh5CG262000 Rh5DG063600 Rh5DG238700
rosa_wichuraiana	Rw5G005570 Rw5G021210 Rw5G021620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	331
AccII	CGCG	2 cut(s)	212, 255
AciI	CCGC	1 cut(s)	331
AclWI	GGATC	2 cut(s)	128, 258
AfaI	GTAC	1 cut(s)	437
AfiI	CCNNNNNNNGG	2 cut(s)	195, 352
AloI	GAACNNNNNNTCC	2 cut(s)	242, 274
AluBI	AGCT	4 cut(s)	23, 139, 166, 267
AluI	AGCT	4 cut(s)	23, 139, 166, 267
Alw21I	GWGCWC	1 cut(s)	287
Alw26I	GTCTC	1 cut(s)	119
Alw44I	GTGCAC	1 cut(s)	283
AlwI	GGATC	2 cut(s)	128, 258
AoxI	GGCC	1 cut(s)	72
ApaI	GGGCCC	1 cut(s)	76
ApaLI	GTGCAC	1 cut(s)	283
ApeKI	GCWGC	4 cut(s)	139, 226, 292, 392
AspLEI	GCGC	1 cut(s)	310
AspS9I	GGNCC	5 cut(s)	72, 73, 147, 177, 343
AsuC2I	CCSGG	1 cut(s)	196
AvaII	GGWCC	3 cut(s)	147, 177, 343
BaeGI	GKGCMC	3 cut(s)	76, 117, 287
BanII	GRGCYC	1 cut(s)	76
Bbv12I	GWGCWC	1 cut(s)	287
BbvCI	CCTCAGC	1 cut(s)	362
BbvI	GCAGC	4 cut(s)	126, 213, 279, 404
BccI	CCATC	1 cut(s)	88
BcgI	CGANNNNNNTGC	2 cut(s)	121, 155
BcnI	CCSGG	1 cut(s)	196
BcoDI	GTCTC	1 cut(s)	119
BfoI	RGCGCY	1 cut(s)	311
BisI	GCNGC	4 cut(s)	140, 227, 293, 393
BlsI	GCNGC	4 cut(s)	141, 228, 294, 394
Bme1390I	CCNGG	1 cut(s)	196
Bme18I	GGWCC	3 cut(s)	147, 177, 343
BmgT120I	GGNCC	5 cut(s)	72, 73, 147, 177, 343
BmiI	GGNNCC	3 cut(s)	73, 74, 148
BmrFI	CCNGG	1 cut(s)	196
BmsI	GCATC	1 cut(s)	308
Bpu10I	CCTNAGC	1 cut(s)	362
BpuMI	CCSGG	1 cut(s)	196
BsaBI	GATNNNNATC	1 cut(s)	98
Bsc4I	CCNNNNNNNGG	2 cut(s)	195, 352
Bse8I	GATNNNNATC	1 cut(s)	98
BseJI	GATNNNNATC	1 cut(s)	98
BseLI	CCNNNNNNNGG	2 cut(s)	195, 352
BseMII	CTCAG	1 cut(s)	353
BseRI	GAGGAG	1 cut(s)	32
BseSI	GKGCMC	3 cut(s)	76, 117, 287
BseXI	GCAGC	4 cut(s)	126, 213, 279, 404
BseYI	CCCAGC	1 cut(s)	142
Bsh1236I	CGCG	2 cut(s)	212, 255
Bsh1285I	CGRYCG	1 cut(s)	216
BshFI	GGCC	1 cut(s)	74
BsiEI	CGRYCG	1 cut(s)	216
BsiHKAI	GWGCWC	1 cut(s)	287
BsiSI	CCGG	1 cut(s)	195
BslI	CCNNNNNNNGG	2 cut(s)	195, 352
BsmAI	GTCTC	1 cut(s)	119
BsnI	GGCC	1 cut(s)	74
Bsp120I	GGGCCC	1 cut(s)	72
Bsp1286I	GDGCHC	3 cut(s)	76, 117, 287
Bsp143I	GATC	3 cut(s)	120, 213, 250
Bsp68I	TCGCGA	2 cut(s)	212, 255
BspACI	CCGC	1 cut(s)	331
BspANI	GGCC	1 cut(s)	74
BspCNI	CTCAG	1 cut(s)	354
BspFNI	CGCG	2 cut(s)	212, 255
BspLI	GGNNCC	3 cut(s)	73, 74, 148
BspPI	GGATC	2 cut(s)	128, 258
BsrBI	CCGCTC	1 cut(s)	331
BssMI	GATC	3 cut(s)	120, 213, 250
Bst4CI	ACNGT	2 cut(s)	289, 373
BstDEI	CTNAG	1 cut(s)	362
BstFNI	CGCG	2 cut(s)	212, 255
BstH2I	RGCGCY	1 cut(s)	311
BstHHI	GCGC	1 cut(s)	310
BstKTI	GATC	3 cut(s)	123, 216, 253
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	3 cut(s)	120, 213, 250
BstMCI	CGRYCG	1 cut(s)	216
BstNSI	RCATGY	1 cut(s)	299
BstSCI	CCNGG	1 cut(s)	194
BstSLI	GKGCMC	3 cut(s)	76, 117, 287
BstUI	CGCG	2 cut(s)	212, 255
BstV1I	GCAGC	4 cut(s)	126, 213, 279, 404
BsuRI	GGCC	1 cut(s)	74
BtgZI	GCGATG	2 cut(s)	331, 393
BtuMI	TCGCGA	2 cut(s)	212, 255
CfoI	GCGC	1 cut(s)	310
Cfr13I	GGNCC	5 cut(s)	72, 73, 147, 177, 343
Csp6I	GTAC	1 cut(s)	436
CviAII	CATG	5 cut(s)	91, 232, 296, 304, 423
CviJI	RGCY	8 cut(s)	23, 59, 74, 139, 166, 267, 361, 395
CviKI_1	RGCY	8 cut(s)	23, 59, 74, 139, 166, 267, 361, 395
CviQI	GTAC	1 cut(s)	436
DdeI	CTNAG	1 cut(s)	362
DpnI	GATC	3 cut(s)	122, 215, 252
DpnII	GATC	3 cut(s)	120, 213, 250
Eco24I	GRGCYC	1 cut(s)	76
Eco47I	GGWCC	3 cut(s)	147, 177, 343
EcoO109I	RGGNCCY	3 cut(s)	72, 73, 343
EcoT38I	GRGCYC	1 cut(s)	76
FaeI	CATG	5 cut(s)	94, 235, 299, 307, 426
FaiI	YATR	7 cut(s)	62, 80, 92, 233, 297, 305, 424
FatI	CATG	5 cut(s)	90, 231, 295, 303, 422
Fnu4HI	GCNGC	4 cut(s)	140, 227, 293, 393
FriOI	GRGCYC	1 cut(s)	76
Fsp4HI	GCNGC	4 cut(s)	140, 227, 293, 393
GlaI	GCGC	1 cut(s)	309
GluI	GCNGC	4 cut(s)	140, 227, 293, 393
GsaI	CCCAGC	1 cut(s)	146
HaeII	RGCGCY	1 cut(s)	311
HaeIII	GGCC	1 cut(s)	74
HapII	CCGG	1 cut(s)	195
HhaI	GCGC	1 cut(s)	310
Hin1II	CATG	5 cut(s)	94, 235, 299, 307, 426
Hin6I	GCGC	1 cut(s)	308
HinP1I	GCGC	1 cut(s)	308
HinfI	GANTC	2 cut(s)	172, 185
HpaII	CCGG	1 cut(s)	195
Hpy166II	GTNNAC	2 cut(s)	150, 285
Hpy188I	TCNGA	2 cut(s)	177, 184
Hpy188III	TCNNGA	6 cut(s)	124, 169, 211, 244, 254, 262
Hpy8I	GTNNAC	2 cut(s)	150, 285
Hpy99I	CGWCG	1 cut(s)	19
HpyAV	CCTTC	3 cut(s)	118, 199, 241
HpyCH4III	ACNGT	2 cut(s)	289, 373
HpyCH4V	TGCA	3 cut(s)	53, 285, 295
HpyF3I	CTNAG	1 cut(s)	362
Hsp92II	CATG	5 cut(s)	94, 235, 299, 307, 426
HspAI	GCGC	1 cut(s)	308
Kzo9I	GATC	3 cut(s)	120, 213, 250
LmnI	GCTCC	1 cut(s)	207
LpnPI	CCDG	6 cut(s)	79, 128, 176, 208, 218, 275
Lsp1109I	GCAGC	4 cut(s)	126, 213, 279, 404
LweI	GCATC	1 cut(s)	308
MalI	GATC	3 cut(s)	122, 215, 252
MbiI	CCGCTC	1 cut(s)	331
MboI	GATC	3 cut(s)	120, 213, 250
MboII	GAAGA	4 cut(s)	19, 145, 262, 400
MhlI	GDGCHC	3 cut(s)	76, 117, 287
MnlI	CCTC	9 cut(s)	22, 50, 53, 190, 327, 334, 356, 357, 406
MspI	CCGG	1 cut(s)	195
MspR9I	CCNGG	1 cut(s)	196
MvnI	CGCG	2 cut(s)	212, 255
NciI	CCSGG	1 cut(s)	196
NdeII	GATC	3 cut(s)	120, 213, 250
NlaIII	CATG	5 cut(s)	94, 235, 299, 307, 426
NlaIV	GGNNCC	3 cut(s)	73, 74, 148
NruI	TCGCGA	2 cut(s)	212, 255
NspI	RCATGY	1 cut(s)	299
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PfeI	GAWTC	2 cut(s)	172, 185
PkrI	GCNGC	4 cut(s)	141, 228, 294, 394
Ple19I	CGATCG	1 cut(s)	216
PpuMI	RGGWCCY	1 cut(s)	343
Psp5II	RGGWCCY	1 cut(s)	343
PspFI	CCCAGC	1 cut(s)	142
PspN4I	GGNNCC	3 cut(s)	73, 74, 148
PspOMI	GGGCCC	1 cut(s)	72
PspPI	GGNCC	5 cut(s)	72, 73, 147, 177, 343
PspPPI	RGGWCCY	1 cut(s)	343
PvuI	CGATCG	1 cut(s)	216
RruI	TCGCGA	2 cut(s)	212, 255
RsaI	GTAC	1 cut(s)	437
RsaNI	GTAC	1 cut(s)	436
SatI	GCNGC	4 cut(s)	140, 227, 293, 393
Sau3AI	GATC	3 cut(s)	120, 213, 250
Sau96I	GGNCC	5 cut(s)	72, 73, 147, 177, 343
ScrFI	CCNGG	1 cut(s)	196
SduI	GDGCHC	3 cut(s)	76, 117, 287
SetI	ASST	8 cut(s)	25, 68, 110, 141, 168, 182, 269, 348
SfaNI	GCATC	1 cut(s)	308
SinI	GGWCC	3 cut(s)	147, 177, 343
SsiI	CCGC	1 cut(s)	331
StyD4I	CCNGG	1 cut(s)	194
TaaI	ACNGT	2 cut(s)	289, 373
TaqI	TCGA	2 cut(s)	123, 327
TfiI	GAWTC	2 cut(s)	172, 185
TseI	GCWGC	4 cut(s)	139, 226, 292, 392
TspDTI	ATGAA	1 cut(s)	292
VneI	GTGCAC	1 cut(s)	283
VpaK11BI	GGWCC	3 cut(s)	147, 177, 343
XceI	RCATGY	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.