Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003774

Physical Location & Seq

Genomic Coordinates Forward (+)

10763011 .. 10764430

Gene Structure 1420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G181300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGGGTTATCTGGGTTTTTTATAATTTGTATGCTCCACTCTGTTATTGCTCTGATTTCTGGAGCTTTGATGATGTTTTACTCCTATGAATTTTATGTGTTCAGCCATGGCCTTGAGACAGCAAGTAAGCTCCAAGGGTCAACACCCCACGATCAGCTTTTAATTCAAACTGCGGATTCCTTATCCGGCTTGCTTCTATTTTCCATTGGATCCCTTTTGTTCATGGTGGCTTTTGTCAAGGACAACAAGTTCCAGAGCTTCTTTGCTAAAGGTTGTGTGTTGCTTCACATTTCCATGGCTATTTGGAGAGTTTACTTTGAGAGGAAACTTGAAGACCTTGCCCGGGATTGGCCAAAGCAGGTCGCCGGAGACATCACACTGGCGCTTTCGTGGGGTTTTCTTCTTTTGTACTCATGGAGGGAGAAGTATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

145

Amino Acids

16.43

Weight (kDa)

6.4

Isoelectric Point (pI)

26.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53035 AT1G53035 AT3G15358
fragaria_vesca	FvH4_3g09111 FvH4_3g09112 FvH4_3g19950
malus_domestica	MD02G1012100.v1.1 MD03G1227700.v1.1 MD10G1293900.v1.1 MD11G1247000.v1.1
prunus_persica	Prupe.4G047900_v2.0.a1 Prupe.4G047900_v2.0.a1 Prupe.4G181300_v2.0.a1
pyrus_communis	pycom05g29020
rosa_chinensis	RchiOBHm_Chr5g0008521 RchiOBHm_Chr5g0033631
rosa_laevigata	RLG00000031577 RLG00000033495
rosa_multiflora	Rmu_sc0001768.1_g000022
rosa_roxburghii	Rroxscaffold_1G00046450 Rroxscaffold_1G00068030
rosa_rugosa	Rorug04G0436600 Rorug05G0141500
rosa_samantha	Rh5AG065100 Rh5AG232400 Rh5BG062600 Rh5BG233100 Rh5CG072500 Rh5CG262000 Rh5DG063600 Rh5DG238700
rosa_wichuraiana	Rw5G005570 Rw5G021210 Rw5G021620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	23
Acc36I	ACCTGC	1 cut(s)	349
AciI	CCGC	1 cut(s)	173
AclWI	GGATC	2 cut(s)	204, 217
AcoI	YGGCCR	1 cut(s)	350
AcsI	RAATTY	1 cut(s)	89
AfaI	GTAC	1 cut(s)	410
AfiI	CCNNNNNNNGG	2 cut(s)	343, 348
AgsI	TTSAA	2 cut(s)	167, 332
AloI	GAACNNNNNNTCC	2 cut(s)	233, 265
AluBI	AGCT	4 cut(s)	65, 130, 157, 258
AluI	AGCT	4 cut(s)	65, 130, 157, 258
Alw26I	GTCTC	2 cut(s)	110, 363
AlwI	GGATC	2 cut(s)	204, 217
Ama87I	CYCGRG	1 cut(s)	342
AoxI	GGCC	2 cut(s)	109, 350
ApoI	RAATTY	1 cut(s)	89
AspLEI	GCGC	1 cut(s)	385
AsuC2I	CCSGG	2 cut(s)	343, 344
AvaI	CYCGRG	1 cut(s)	342
BalI	TGGCCA	1 cut(s)	352
BamHI	GGATCC	1 cut(s)	209
BbsI	GAAGAC	1 cut(s)	339
BcnI	CCSGG	2 cut(s)	343, 344
BcoDI	GTCTC	2 cut(s)	110, 363
BfoI	RGCGCY	1 cut(s)	386
BfuAI	ACCTGC	1 cut(s)	349
Bme1390I	CCNGG	2 cut(s)	343, 344
BmeT110I	CYCGRG	1 cut(s)	342
BmiI	GGNNCC	1 cut(s)	211
BmrFI	CCNGG	2 cut(s)	343, 344
BpiI	GAAGAC	1 cut(s)	339
BpmI	CTGGAG	1 cut(s)	81
BpuEI	CTTGAG	1 cut(s)	134
BpuMI	CCSGG	2 cut(s)	343, 344
BsaJI	CCNNGG	4 cut(s)	106, 133, 294, 342
Bsc4I	CCNNNNNNNGG	2 cut(s)	343, 348
Bse1I	ACTGG	1 cut(s)	384
BseDI	CCNNGG	4 cut(s)	106, 133, 294, 342
BseLI	CCNNNNNNNGG	2 cut(s)	343, 348
BseNI	ACTGG	1 cut(s)	384
BshFI	GGCC	2 cut(s)	111, 352
BsiHKCI	CYCGRG	1 cut(s)	342
BsiSI	CCGG	3 cut(s)	186, 343, 366
BslI	CCNNNNNNNGG	2 cut(s)	343, 348
BsmAI	GTCTC	2 cut(s)	110, 363
BsnI	GGCC	2 cut(s)	111, 352
BsoBI	CYCGRG	1 cut(s)	342
Bsp143I	GATC	2 cut(s)	151, 209
Bsp19I	CCATGG	2 cut(s)	106, 294
BspACI	CCGC	1 cut(s)	173
BspANI	GGCC	2 cut(s)	111, 352
BspLI	GGNNCC	1 cut(s)	211
BspMI	ACCTGC	1 cut(s)	349
BspPI	GGATC	2 cut(s)	204, 217
BsrI	ACTGG	1 cut(s)	384
BssECI	CCNNGG	4 cut(s)	106, 133, 294, 342
BssMI	GATC	2 cut(s)	151, 209
BssT1I	CCWWGG	3 cut(s)	106, 133, 294
BstC8I	GCNNGC	1 cut(s)	191
BstDSI	CCRYGG	2 cut(s)	106, 294
BstH2I	RGCGCY	1 cut(s)	386
BstHHI	GCGC	1 cut(s)	385
BstKTI	GATC	2 cut(s)	154, 212
BstMAI	GTCTC	2 cut(s)	110, 363
BstMBI	GATC	2 cut(s)	151, 209
BstSCI	CCNGG	2 cut(s)	341, 342
BstV2I	GAAGAC	1 cut(s)	339
BstX2I	RGATCY	1 cut(s)	209
BstYI	RGATCY	1 cut(s)	209
BsuRI	GGCC	2 cut(s)	111, 352
BtgI	CCRYGG	2 cut(s)	106, 294
BtsIMutI	CAGTG	1 cut(s)	377
BveI	ACCTGC	1 cut(s)	349
Cac8I	GCNNGC	1 cut(s)	191
CfoI	GCGC	1 cut(s)	385
Cfr9I	CCCGGG	1 cut(s)	342
Csp6I	GTAC	1 cut(s)	409
CviAII	CATG	4 cut(s)	107, 223, 295, 414
CviQI	GTAC	1 cut(s)	409
DpnI	GATC	2 cut(s)	153, 211
DpnII	GATC	2 cut(s)	151, 209
EaeI	YGGCCR	1 cut(s)	350
Eco130I	CCWWGG	3 cut(s)	106, 133, 294
Eco88I	CYCGRG	1 cut(s)	342
EcoT14I	CCWWGG	3 cut(s)	106, 133, 294
ErhI	CCWWGG	3 cut(s)	106, 133, 294
FaeI	CATG	4 cut(s)	110, 226, 298, 417
FaiI	YATR	9 cut(s)	23, 32, 87, 96, 108, 224, 296, 415, 429
FatI	CATG	4 cut(s)	106, 222, 294, 413
GlaI	GCGC	1 cut(s)	384
GsuI	CTGGAG	1 cut(s)	81
HaeII	RGCGCY	1 cut(s)	386
HaeIII	GGCC	2 cut(s)	111, 352
HapII	CCGG	3 cut(s)	186, 343, 366
HhaI	GCGC	1 cut(s)	385
Hin1II	CATG	4 cut(s)	110, 226, 298, 417
Hin6I	GCGC	1 cut(s)	383
HinP1I	GCGC	1 cut(s)	383
HincII	GTYRAC	1 cut(s)	141
HindII	GTYRAC	1 cut(s)	141
HinfI	GANTC	1 cut(s)	176
HpaII	CCGG	3 cut(s)	186, 343, 366
Hpy166II	GTNNAC	2 cut(s)	141, 313
Hpy188I	TCNGA	1 cut(s)	54
Hpy188III	TCNNGA	2 cut(s)	60, 253
Hpy8I	GTNNAC	2 cut(s)	141, 313
Hsp92II	CATG	4 cut(s)	110, 226, 298, 417
HspAI	GCGC	1 cut(s)	383
Kzo9I	GATC	2 cut(s)	151, 209
LmnI	GCTCC	3 cut(s)	39, 62, 135
LpnPI	CCDG	7 cut(s)	45, 199, 266, 344, 356, 365, 379
MalI	GATC	2 cut(s)	153, 211
MboI	GATC	2 cut(s)	151, 209
MboII	GAAGA	2 cut(s)	344, 392
MflI	RGATCY	1 cut(s)	209
MlsI	TGGCCA	1 cut(s)	352
MluCI	AATT	3 cut(s)	24, 89, 162
MluNI	TGGCCA	1 cut(s)	352
MnlI	CCTC	2 cut(s)	315, 411
Mox20I	TGGCCA	1 cut(s)	352
MscI	TGGCCA	1 cut(s)	352
MseI	TTAA	1 cut(s)	161
MslI	CAYNNNNRTG	1 cut(s)	293
Msp20I	TGGCCA	1 cut(s)	352
MspI	CCGG	3 cut(s)	186, 343, 366
MspR9I	CCNGG	2 cut(s)	343, 344
NciI	CCSGG	2 cut(s)	343, 344
NcoI	CCATGG	2 cut(s)	106, 294
NdeII	GATC	2 cut(s)	151, 209
NlaIII	CATG	4 cut(s)	110, 226, 298, 417
NlaIV	GGNNCC	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	176
PsiI	TTATAA	1 cut(s)	23
PspN4I	GGNNCC	1 cut(s)	211
PsuI	RGATCY	1 cut(s)	209
RsaI	GTAC	1 cut(s)	410
RsaNI	GTAC	1 cut(s)	409
RseI	CAYNNNNRTG	1 cut(s)	293
SaqAI	TTAA	1 cut(s)	161
Sau3AI	GATC	2 cut(s)	151, 209
ScrFI	CCNGG	2 cut(s)	343, 344
SetI	ASST	7 cut(s)	67, 132, 159, 260, 274, 339, 363
SmaI	CCCGGG	1 cut(s)	344
SmiMI	CAYNNNNRTG	1 cut(s)	293
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
Sse9I	AATT	3 cut(s)	24, 89, 162
SsiI	CCGC	1 cut(s)	173
StyD4I	CCNGG	2 cut(s)	341, 342
StyI	CCWWGG	3 cut(s)	106, 133, 294
TasI	AATT	3 cut(s)	24, 89, 162
TatI	WGTACW	1 cut(s)	408
TfiI	GAWTC	1 cut(s)	176
Tru1I	TTAA	1 cut(s)	161
Tru9I	TTAA	1 cut(s)	161
TscAI	CASTG	1 cut(s)	384
TspDTI	ATGAA	2 cut(s)	102, 211
TspMI	CCCGGG	1 cut(s)	342
TspRI	CASTG	1 cut(s)	384
XapI	RAATTY	1 cut(s)	89
XmaI	CCCGGG	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.