Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011080

Physical Location & Seq

Genomic Coordinates Reverse (-)

5216262 .. 5220274

Gene Structure 4013 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G15470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2652 bp

ATGAGCTACCAAAACGAGGAAGAAGAGGAAGGAGGAGACACCAACGATTGCTTCTACGAGTCTCTTGATCGTTTAGCTTCTTCCTCTTCTTGCTCTTGTTCCGCTTCTAACTCTGATTACGATTCCGAATCCTCTCCTCGGATCTCCTCCGCCGCTTCTCATGACTCTGAAGAACTCTACGGTGGTGGTCGCCGCCGTCGATACCCATTCCCTGTTCCTCGGTTTCCAATGGGAGCTTCGAAGTTCGACGTTTGGACCTCTGAACCTGCTTCTGTCTCTGAGAGGCGTTCCAAGCTTTTAAACGAAATGGGTCTTAGCCGTGACCCGGTTCTCTCCCGGTTAAAACCCGTTTCAGATTCTTCCAGCTCCAAAGATACCGGAGCCGCCGGCTTCGAGATTTCTCGATCGATCTCGTGTAATCAATTGGCTCGGCGAGATCATGGAGAGTGTTCTGAAAGTGTCGGCGGTTGTGCTTCTTGTATCGTGAGATCGAAATCCGACATTACCACTAGCCAATGTGGTGATCGTGACCGTCGATATACGTCTCCTGGTAATCCTTGTTCTTGTTCCGTCTCTAAACTCTCTGTTCATCATTCTTCACATTCAGAGATCAGTAGAACCAGCTCGCCATTTGTGAATTGCAGTGTAGGATCAGTTAGTGCTGATTCATTGCGGTTAAATGGAGATTCTGATTGTGTACTGAGAGAGAGTGTAGTGAATGAGGAAGTGGAAGTGTGTACTATTAAGAATCTTGATAATGGGAAAGAGTTTGTGGTGAATGAGATTCAAGAAGATGGTACATGGAAGAAGGTGAAGGAAGTGGGAACTGGAACACAGATGACGATGGAGGAGTTTGAGATGTGTGTTGGACATTCTCCCATTGTTCAGGAGCTTATGAGAAGACAGAACGTTGAGGATTCTGATAAGAACACGTCTAAGGAAAACGAAGACAGTGGGAATAGTAATAAGGATAATGCATCCAAGTCTAAGAAGAAAGGAAGTTGGTTTAAGAGTATTAAGAGTGTTGCAAGTAGCATGACTGGTCATAGCAAAGAGAGACGAAGCAGCGATGATAGAGATACATCGTCAGAGAGAGGTGGTCGGAGGTCGAGCTCTGCTACTGATGATTCTCAGGAATCTTCTTTTCATGGGCCGGAAAGAGTTAGGGTTAGACAGTATGGGAAATCATCTAAAGAGCTCACGGCATTGTACAAAACGCAGGAGATTCAAGCGCATAATGGTTCTATTTGGAGCATTAAGTTTAGTTTGGATGGTAAATATCTTGCTAGTGCTGGTGAGGATTGCATCATTCACATCTGGCAAGTCGTTGAGGCTGAGAAGAAGGGTGAGTTGTTACTTGATAGACCGGAACTGTTGCTTTTGGCTACTAATGGGTCTCCAGAACCGACTACTATGTCACCAAGGAGAAGAGGGAGAACTTCTATAAGTAGAAAGTCATTGAGTTTAGAGAACATATTTGTTCCAGATTCTCTTTTCGGGCTTTCGGAAAAGCCCTTTTGTTCCTTTCAGGGACATGTGGATGATGTACTTGACCTTGCTTGGTCCAAGTCTCAGCATTTGCTCTCTTCATCAATGGATAAAACAGTTCGTTTGTGGAATTTGTCCAGCCAGACTTGCTTGAAAGTATTTTCGCACAGTGATTACGTGACTTGCATTCAATTTAATCCGGTTGATGATAGATACTTCATCAGTGGATCCTTAGATGCAAAAGTTCGCGTCTGGAGCATTCCAGATCGTCAAGTAGTTGACTGGTATGATCTTCATGAGATGGTCACTTCTGCTTGCTACACTCCAGATGGTCAGGGTGTGTTGGTTGGTTCATACAAAGGTAGCTGTCGGATGTACAGTGCATCAGATAACAAGCTGCAACAGAAAAGCCAGATAAATTTACAGAACAAGAAGAAGAAAGCTCATCAAAAAAAGATAACTGGTTTCCAGTTTGTTCCTGGGAGCTCATCTGAAGTGCTTGTCACATCTTCCGATTCAAGGATCCGTGTTGTTGATGGAACTGATCTAGTTAACAAACTTAAAGGGTTTCGAAATACGAGCAGCCAGATCTCTGCCTCAATCACAGCAGATGGGAAATACGTAGTTTCAGCAAGCGAGGATTCACACGTGTACATATGGAAGTACGAATCCCCTGCTTCTCGACCAAGCAGAAGTAACAACAACAAGAACGTGACAGTCACAAACTCTTACGAGCATTTCCATAGCCAAGACGTCTCTGCAGCCATCTCATGGCCTGGAATGGCCTCAACAGAAAACTGGGGAACCCAAAACAGAGCGGGGTTTAACGGAAGCACCAATAACTTGGACAATATCTCCACAGCTAACCATCCGCCTACACCGGTAGACCAGCTGGGGACTGTGGAGCGATTAAACAGTCCACGGAATGGGATCATATCGAGCGCAACAAACGGATACTTTTTCGATAGAATGTCAGCGACTTGGCCTGAAGAGAAACTGTTGTTTGCAAGGAACAGAAGTGGGAATCGTCTGAGTACGGATATGTCGTCGTCAAATGGAAACTCAGGGAATGTATCGGCTTCTTGGGGAATGGTGATTGTCACTGCAGGTCTCAGAGGAGAGATACGAACGTTTCAGAACTTTGGTTTGCCCATTCGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0010008 GO:0012505 GO:0016020 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048471 GO:0097708 GO:0098588 GO:0098791 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

883

Amino Acids

97.41

Weight (kDa)

6.7

Isoelectric Point (pI)

50.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_THOC3	PF25174	402 - 444	1.4e-07	THOC3 beta-propeller domain
WD40	PF00400	406 - 440	1.2e-07	WD domain, G-beta repeat
Beta-prop_WDR5	PF25175	409 - 446	3.3e-06	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	502 - 583	1.9e-14	WDR3 first beta-propeller domain
WD40	PF00400	504 - 540	3.4e-07	WD domain, G-beta repeat
WD40_Prp19	PF24814	506 - 629	5.8e-14	Prp19 WD40 domain
WD40_CDC20-Fz	PF24807	506 - 600	9.9e-10	CDC20/Fizzy WD40 domain
Beta-prop_WDR5	PF25175	507 - 730	3.1e-36	WDR5 beta-propeller domain
EIF3I	PF24805	508 - 705	7.5e-11	EIF3I
Beta-prop_WDR36-Utp21_2nd	PF25168	508 - 566	2.5e-07	WDR36/Utp21 second beta-propeller domain
Beta-prop_IFT122_1st	PF23381	509 - 620	5.7e-07	IFT122 first beta-propeller
Beta-prop_CAF1B_HIR1	PF24105	509 - 589	4.2e-11	CAF1B/HIR1 beta-propeller domain
Beta-prop_THOC3	PF25174	512 - 720	3.2e-26	THOC3 beta-propeller domain
Beta-prop_Aladin	PF25460	514 - 633	2.6e-09	Aladin seven-bladed propeller
Beta-prop_WDR3_2nd	PF25172	515 - 716	5e-15	WDR3 second beta-propeller domain
Beta-prop_EML	PF23409	516 - 686	1.8e-06	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	524 - 630	6.5e-10	WDR90/POC16, second beta-propeller
WD40_Gbeta	PF25391	525 - 716	3.2e-11	G protein beta WD-40 repeat protein
Beta-prop_WDR36-Utp21_1st	PF25171	531 - 667	8.8e-07	WDR36/Utp21 first beta-propeller
WD40	PF00400	545 - 582	6.8e-06	WD domain, G-beta repeat
Beta-prop_WDR36-Utp21_2nd	PF25168	552 - 631	2.1e-06	WDR36/Utp21 second beta-propeller domain
WD40_WDHD1_1st	PF24817	553 - 735	7.6e-13	WDHD1 first WD40 domain
Beta-prop_EML_2	PF23414	567 - 729	2.4e-15	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_1st	PF25173	587 - 720	2.5e-08	WDR3 first beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15470 AT5G54200
fragaria_vesca	FvH4_3g20610 FvH4_3g20610
malus_domestica	MD03G1223700.v1.1 MD11G1241600.v1.1
prunus_persica	Prupe.4G185800_v2.0.a1 Prupe.4G185800_v2.0.a1
pyrus_communis	pycom03g17200 pycom03g17210 pycom11g21320
rosa_chinensis	RchiOBHm_Chr5g0034631
rosa_laevigata	RLG00000033560
rosa_roxburghii	Rroxscaffold_1G00045690
rosa_rugosa	Rorug05G0147300
rosa_samantha	Rh5AG239300 Rh5BG240000 Rh5CG270400 Rh5DG248200
rosa_wichuraiana	Rw5G021930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1414
AatII	GACGTC	1 cut(s)	2244
Acc36I	ACCTGC	2 cut(s)	274, 2585
AccB7I	CCANNNNNTGG	2 cut(s)	2259, 2414
AccBSI	CCGCTC	1 cut(s)	2306
AccI	GTMKAC	1 cut(s)	2373
AccII	CGCG	1 cut(s)	1737
AciI	CCGC	9 cut(s)	102, 150, 153, 193, 384, 465, 673, 2306, 2360
AclI	AACGTT	2 cut(s)	909, 2618
AclWI	GGATC	7 cut(s)	149, 658, 1710, 1723, 2005, 2018, 2426
AcsI	RAATTY	2 cut(s)	1618, 1906
AcuI	CTGAAG	3 cut(s)	189, 2001, 2496
AcvI	CACGTG	1 cut(s)	2137
AcyI	GRCGYC	1 cut(s)	2241
AfaI	GTAC	9 cut(s)	699, 739, 799, 1211, 1548, 1865, 2141, 2153, 2524
AfiI	CCNNNNNNNGG	6 cut(s)	16, 138, 325, 2007, 2259, 2414
AflIII	ACRYGT	4 cut(s)	930, 1534, 2134, 2136
AgeI	ACCGGT	1 cut(s)	2368
AgsI	TTSAA	5 cut(s)	788, 1229, 1642, 1679, 2007
AjiI	CACGTC	1 cut(s)	933
AjnI	CCWGG	3 cut(s)	547, 1966, 2263
AjuI	GAANNNNNNNTTGG	4 cut(s)	35, 67, 220, 252
Alw21I	GWGCWC	3 cut(s)	1115, 1200, 1976
AlwI	GGATC	7 cut(s)	149, 658, 1710, 1723, 2005, 2018, 2426
AoxI	GGCC	4 cut(s)	1151, 2261, 2271, 2471
ApeKI	GCWGC	4 cut(s)	1065, 1885, 2070, 2249
ApoI	RAATTY	2 cut(s)	1618, 1906
AsiGI	ACCGGT	1 cut(s)	2368
AspLEI	GCGC	2 cut(s)	1234, 2432
AspS9I	GGNCC	3 cut(s)	255, 1151, 1563
AsuC2I	CCSGG	2 cut(s)	326, 337
AsuHPI	GGTGA	7 cut(s)	533, 787, 823, 1307, 1358, 1410, 2593
AsuII	TTCGAA	2 cut(s)	239, 2059
AvaII	GGWCC	2 cut(s)	255, 1563
BaeI	ACNNNNGTAYC	2 cut(s)	2603, 2636
BamHI	GGATCC	2 cut(s)	1715, 2010
BanII	GRGCYC	3 cut(s)	1115, 1200, 1976
BauI	CACGAG	1 cut(s)	412
BbrPI	CACGTG	1 cut(s)	2137
BbsI	GAAGAC	2 cut(s)	907, 954
Bbv12I	GWGCWC	3 cut(s)	1115, 1200, 1976
BbvI	GCAGC	4 cut(s)	1077, 1872, 2082, 2261
BccI	CCATC	9 cut(s)	788, 838, 1265, 1783, 1811, 2018, 2093, 2261, 2364
BceAI	ACGGC	3 cut(s)	180, 303, 1218
BcgI	CGANNNNNNTGC	2 cut(s)	2144, 2178
BciT130I	CCWGG	3 cut(s)	549, 1968, 2265
BciVI	GTATCC	1 cut(s)	2435
BcnI	CCSGG	2 cut(s)	326, 337
BfaI	CTAG	3 cut(s)	510, 1287, 2036
BfmI	CTRYAG	2 cut(s)	2247, 2592
BfuAI	ACCTGC	2 cut(s)	274, 2585
BfuI	GTATCC	1 cut(s)	2435
BglII	AGATCT	1 cut(s)	2076
BisI	GCNGC	7 cut(s)	153, 193, 384, 1066, 1886, 2071, 2250
BlsI	GCNGC	7 cut(s)	154, 194, 385, 1067, 1887, 2072, 2251
Bme1390I	CCNGG	5 cut(s)	326, 337, 549, 1968, 2265
Bme18I	GGWCC	2 cut(s)	255, 1563
BmgBI	CACGTC	1 cut(s)	933
BmgT120I	GGNCC	3 cut(s)	255, 1151, 1563
BmiI	GGNNCC	4 cut(s)	382, 1717, 2012, 2293
BmrFI	CCNGG	5 cut(s)	326, 337, 549, 1968, 2265
BmrI	ACTGGG	1 cut(s)	2296
BmsI	GCATC	4 cut(s)	986, 1314, 1714, 1880
BmuI	ACTGGG	1 cut(s)	2296
BpiI	GAAGAC	2 cut(s)	907, 954
BpmI	CTGGAG	3 cut(s)	1383, 1762, 1797
Bpu14I	TTCGAA	2 cut(s)	239, 2059
BpuMI	CCSGG	2 cut(s)	326, 337
Bsa29I	ATCGAT	1 cut(s)	407
BsaAI	YACGTR	3 cut(s)	1666, 2110, 2137
BsaBI	GATNNNNATC	1 cut(s)	493
BsaHI	GRCGYC	1 cut(s)	2241
BsaI	GGTCTC	2 cut(s)	1401, 2603
BsaJI	CCNNGG	5 cut(s)	137, 218, 1421, 1967, 2408
BsaWI	WCCGGW	4 cut(s)	377, 1366, 1687, 2368
BsaXI	ACNNNNNCTCC	2 cut(s)	2327, 2357
Bsc4I	CCNNNNNNNGG	6 cut(s)	16, 138, 325, 2007, 2259, 2414
Bse118I	RCCGGY	2 cut(s)	386, 2368
Bse1I	ACTGG	6 cut(s)	832, 1045, 1775, 1954, 1957, 2291
Bse3DI	GCAATG	1 cut(s)	668
Bse8I	GATNNNNATC	1 cut(s)	493
BseBI	CCWGG	3 cut(s)	549, 1968, 2265
BseCI	ATCGAT	1 cut(s)	407
BseDI	CCNNGG	5 cut(s)	137, 218, 1421, 1967, 2408
BseGI	GGATG	5 cut(s)	977, 1276, 1546, 1866, 2356
BseJI	GATNNNNATC	1 cut(s)	493
BseLI	CCNNNNNNNGG	6 cut(s)	16, 138, 325, 2007, 2259, 2414
BseMI	GCAATG	1 cut(s)	668
BseMII	CTCAG	8 cut(s)	270, 692, 1145, 1326, 1586, 2510, 2565, 2614
BseNI	ACTGG	6 cut(s)	832, 1045, 1775, 1954, 1957, 2291
BseRI	GAGGAG	5 cut(s)	48, 126, 136, 863, 2619
BseXI	GCAGC	4 cut(s)	1077, 1872, 2082, 2261
BseYI	CCCAGC	1 cut(s)	2380
Bsh1236I	CGCG	1 cut(s)	1737
Bsh1285I	CGRYCG	1 cut(s)	407
BshFI	GGCC	4 cut(s)	1153, 2263, 2273, 2473
BshTI	ACCGGT	1 cut(s)	2368
BshVI	ATCGAT	1 cut(s)	407
BsiEI	CGRYCG	1 cut(s)	407
BsiHKAI	GWGCWC	3 cut(s)	1115, 1200, 1976
BsiSI	CCGG	8 cut(s)	326, 337, 378, 387, 1154, 1367, 1688, 2369
BslFI	GGGAC	2 cut(s)	1545, 2398
BslI	CCNNNNNNNGG	6 cut(s)	16, 138, 325, 2007, 2259, 2414
BsmBI	CGTCTC	4 cut(s)	549, 577, 1051, 2248
BsmFI	GGGAC	2 cut(s)	1545, 2398
BsmI	GAATGC	2 cut(s)	1674, 1746
BsnI	GGCC	4 cut(s)	1153, 2263, 2273, 2473
Bso31I	GGTCTC	2 cut(s)	1401, 2603
Bsp119I	TTCGAA	2 cut(s)	239, 2059
Bsp1286I	GDGCHC	3 cut(s)	1115, 1200, 1976
Bsp1407I	TGTACA	3 cut(s)	1209, 1863, 2139
BspACI	CCGC	9 cut(s)	102, 150, 153, 193, 384, 465, 673, 2306, 2360
BspANI	GGCC	4 cut(s)	1153, 2263, 2273, 2473
BspCNI	CTCAG	8 cut(s)	271, 693, 1144, 1327, 1585, 2511, 2564, 2613
BspDI	ATCGAT	1 cut(s)	407
BspFNI	CGCG	1 cut(s)	1737
BspHI	TCATGA	2 cut(s)	160, 1783
BspLI	GGNNCC	4 cut(s)	382, 1717, 2012, 2293
BspMAI	CTGCAG	2 cut(s)	2251, 2596
BspMI	ACCTGC	2 cut(s)	274, 2585
BspPI	GGATC	7 cut(s)	149, 658, 1710, 1723, 2005, 2018, 2426
BspT104I	TTCGAA	2 cut(s)	239, 2059
BspTNI	GGTCTC	2 cut(s)	1401, 2603
BsrBI	CCGCTC	1 cut(s)	2306
BsrDI	GCAATG	1 cut(s)	668
BsrFI	RCCGGY	2 cut(s)	386, 2368
BsrGI	TGTACA	3 cut(s)	1209, 1863, 2139
BsrI	ACTGG	6 cut(s)	832, 1045, 1775, 1954, 1957, 2291
BssAI	RCCGGY	2 cut(s)	386, 2368
BssECI	CCNNGG	5 cut(s)	137, 218, 1421, 1967, 2408
BssNI	GRCGYC	1 cut(s)	2241
BssSI	CACGAG	1 cut(s)	412
BssT1I	CCWWGG	1 cut(s)	1421
Bst2BI	CACGAG	1 cut(s)	412
Bst2UI	CCWGG	3 cut(s)	549, 1968, 2265
Bst6I	CTCTTC	5 cut(s)	18, 91, 1423, 1591, 2472
BstACI	GRCGYC	1 cut(s)	2241
BstAUI	TGTACA	3 cut(s)	1209, 1863, 2139
BstBAI	YACGTR	3 cut(s)	1666, 2110, 2137
BstBI	TTCGAA	2 cut(s)	239, 2059
BstC8I	GCNNGC	4 cut(s)	388, 626, 1804, 2122
BstDSI	CCRYGG	1 cut(s)	2408
BstF5I	GGATG	5 cut(s)	977, 1276, 1546, 1866, 2356
BstFNI	CGCG	1 cut(s)	1737
BstHHI	GCGC	2 cut(s)	1234, 2432
BstMCI	CGRYCG	1 cut(s)	407
BstMWI	GCNNNNNNNGC	3 cut(s)	292, 1635, 1743
BstNI	CCWGG	3 cut(s)	549, 1968, 2265
BstNSI	RCATGY	1 cut(s)	1538
BstSCI	CCNGG	5 cut(s)	324, 335, 547, 1966, 2263
BstSFI	CTRYAG	2 cut(s)	2247, 2592
BstSNI	TACGTA	1 cut(s)	2110
BstUI	CGCG	1 cut(s)	1737
BstV1I	GCAGC	4 cut(s)	1077, 1872, 2082, 2261
BstV2I	GAAGAC	2 cut(s)	907, 954
BstX2I	RGATCY	4 cut(s)	141, 1715, 2010, 2076
BstXI	CCANNNNNNTGG	1 cut(s)	2332
BstYI	RGATCY	4 cut(s)	141, 1715, 2010, 2076
Bsu15I	ATCGAT	1 cut(s)	407
BsuI	GTATCC	1 cut(s)	2435
BsuRI	GGCC	4 cut(s)	1153, 2263, 2273, 2473
BsuTUI	ATCGAT	1 cut(s)	407
BtgI	CCRYGG	1 cut(s)	2408
BtgZI	GCGATG	1 cut(s)	1083
BtrI	CACGTC	1 cut(s)	933
BtsCI	GGATG	5 cut(s)	977, 1276, 1546, 1866, 2356
BtsI	GCAGTG	2 cut(s)	649, 2589
BtsIMutI	CAGTG	6 cut(s)	649, 958, 1663, 1717, 1873, 2589
BveI	ACCTGC	2 cut(s)	274, 2585
Cac8I	GCNNGC	4 cut(s)	388, 626, 1804, 2122
CciI	TCATGA	2 cut(s)	160, 1783
CfoI	GCGC	2 cut(s)	1234, 2432
Cfr10I	RCCGGY	2 cut(s)	386, 2368
Cfr13I	GGNCC	3 cut(s)	255, 1151, 1563
ClaI	ATCGAT	1 cut(s)	407
CseI	GACGC	1 cut(s)	1726
Csp6I	GTAC	9 cut(s)	698, 738, 798, 1210, 1547, 1864, 2140, 2152, 2523
CspAI	ACCGGT	1 cut(s)	2368
CviAII	CATG	8 cut(s)	161, 440, 801, 1036, 1148, 1535, 1784, 2259
CviQI	GTAC	9 cut(s)	698, 738, 798, 1210, 1547, 1864, 2140, 2152, 2523
DraI	TTTAAA	1 cut(s)	300
DrdI	GACNNNNNNGTC	1 cut(s)	1414
DseDI	GACNNNNNNGTC	1 cut(s)	1414
Eam1104I	CTCTTC	5 cut(s)	18, 91, 1423, 1591, 2472
EarI	CTCTTC	5 cut(s)	18, 91, 1423, 1591, 2472
EciI	GGCGGA	2 cut(s)	139, 2349
Ecl136II	GAGCTC	3 cut(s)	1113, 1198, 1974
Eco105I	TACGTA	1 cut(s)	2110
Eco130I	CCWWGG	1 cut(s)	1421
Eco24I	GRGCYC	3 cut(s)	1115, 1200, 1976
Eco31I	GGTCTC	2 cut(s)	1401, 2603
Eco47I	GGWCC	2 cut(s)	255, 1563
Eco53kI	GAGCTC	3 cut(s)	1113, 1198, 1974
Eco57I	CTGAAG	3 cut(s)	189, 2001, 2496
Eco72I	CACGTG	1 cut(s)	2137
EcoICRI	GAGCTC	3 cut(s)	1113, 1198, 1974
EcoRII	CCWGG	3 cut(s)	547, 1966, 2263
EcoT14I	CCWWGG	1 cut(s)	1421
EcoT22I	ATGCAT	1 cut(s)	979
EcoT38I	GRGCYC	3 cut(s)	1115, 1200, 1976
ErhI	CCWWGG	1 cut(s)	1421
Esp3I	CGTCTC	4 cut(s)	549, 577, 1051, 2248
FaeI	CATG	8 cut(s)	164, 443, 804, 1039, 1151, 1538, 1787, 2262
FaqI	GGGAC	2 cut(s)	1545, 2398
FatI	CATG	8 cut(s)	160, 439, 800, 1035, 1147, 1534, 1783, 2258
FauI	CCCGC	1 cut(s)	2299
FauNDI	CATATG	1 cut(s)	2144
FblI	GTMKAC	1 cut(s)	2373
Fnu4HI	GCNGC	7 cut(s)	153, 193, 384, 1066, 1886, 2071, 2250
FokI	GGATG	5 cut(s)	964, 1283, 1553, 1873, 2343
FriOI	GRGCYC	3 cut(s)	1115, 1200, 1976
Fsp4HI	GCNGC	7 cut(s)	153, 193, 384, 1066, 1886, 2071, 2250
FspBI	CTAG	3 cut(s)	510, 1287, 2036
GlaI	GCGC	2 cut(s)	1233, 2431
GluI	GCNGC	7 cut(s)	153, 193, 384, 1066, 1886, 2071, 2250
GsaI	CCCAGC	1 cut(s)	2384
GsuI	CTGGAG	3 cut(s)	1383, 1762, 1797
HaeIII	GGCC	4 cut(s)	1153, 2263, 2273, 2473
HapII	CCGG	8 cut(s)	326, 337, 378, 387, 1154, 1367, 1688, 2369
HgaI	GACGC	1 cut(s)	1726
HhaI	GCGC	2 cut(s)	1234, 2432
Hin1I	GRCGYC	1 cut(s)	2241
Hin1II	CATG	8 cut(s)	164, 443, 804, 1039, 1151, 1538, 1787, 2262
Hin6I	GCGC	2 cut(s)	1232, 2430
HinP1I	GCGC	2 cut(s)	1232, 2430
HincII	GTYRAC	2 cut(s)	1768, 2041
HindII	GTYRAC	2 cut(s)	1768, 2041
HindIII	AAGCTT	1 cut(s)	293
HpaI	GTTAAC	1 cut(s)	2041
HpaII	CCGG	8 cut(s)	326, 337, 378, 387, 1154, 1367, 1688, 2369
HphI	GGTGA	7 cut(s)	533, 787, 823, 1307, 1358, 1410, 2593
Hpy166II	GTNNAC	7 cut(s)	698, 738, 1768, 2041, 2140, 2374, 2408
Hpy8I	GTNNAC	7 cut(s)	698, 738, 1768, 2041, 2140, 2374, 2408
Hpy99I	CGWCG	4 cut(s)	201, 251, 537, 2539
HpyAV	CCTTC	4 cut(s)	23, 802, 808, 1336
HpyF10VI	GCNNNNNNNGC	3 cut(s)	292, 1635, 1743
Hsp92I	GRCGYC	1 cut(s)	2241
Hsp92II	CATG	8 cut(s)	164, 443, 804, 1039, 1151, 1538, 1787, 2262
HspAI	GCGC	2 cut(s)	1232, 2430
KroI	GCCGGC	1 cut(s)	386
KroNI	GCCGGC	1 cut(s)	388
KspAI	GTTAAC	1 cut(s)	2041
LmnI	GCTCC	8 cut(s)	233, 371, 380, 889, 1251, 1743, 1971, 2392
Lsp1109I	GCAGC	4 cut(s)	1077, 1872, 2082, 2261
LweI	GCATC	4 cut(s)	986, 1314, 1714, 1880
MaeI	CTAG	3 cut(s)	510, 1287, 2036
MbiI	CCGCTC	1 cut(s)	2306
MfeI	CAATTG	1 cut(s)	422
MflI	RGATCY	4 cut(s)	141, 1715, 2010, 2076
MhlI	GDGCHC	3 cut(s)	1115, 1200, 1976
MluCI	AATT	5 cut(s)	422, 637, 1618, 1679, 1906
MlyI	GAGTC	2 cut(s)	68, 158
MmeI	TCCRAC	4 cut(s)	522, 847, 1082, 1838
Mph1103I	ATGCAT	1 cut(s)	979
MroNI	GCCGGC	1 cut(s)	386
MslI	CAYNNNNRTG	1 cut(s)	1539
MspA1I	CMGCKG	1 cut(s)	2380
MspI	CCGG	8 cut(s)	326, 337, 378, 387, 1154, 1367, 1688, 2369
MspR9I	CCNGG	5 cut(s)	326, 337, 549, 1968, 2265
MunI	CAATTG	1 cut(s)	422
Mva1269I	GAATGC	2 cut(s)	1674, 1746
MvaI	CCWGG	3 cut(s)	549, 1968, 2265
MvnI	CGCG	1 cut(s)	1737
MwoI	GCNNNNNNNGC	3 cut(s)	292, 1635, 1743
NaeI	GCCGGC	1 cut(s)	388
NciI	CCSGG	2 cut(s)	326, 337
NdeI	CATATG	1 cut(s)	2144
NgoMIV	GCCGGC	1 cut(s)	386
NlaIII	CATG	8 cut(s)	164, 443, 804, 1039, 1151, 1538, 1787, 2262
NlaIV	GGNNCC	4 cut(s)	382, 1717, 2012, 2293
NmeAIII	GCCGAG	1 cut(s)	409
NmuCI	GTSAC	9 cut(s)	320, 527, 1416, 1666, 1792, 1990, 2200, 2206, 2587
NsiI	ATGCAT	1 cut(s)	979
NspI	RCATGY	1 cut(s)	1538
NspV	TTCGAA	2 cut(s)	239, 2059
PagI	TCATGA	2 cut(s)	160, 1783
PciI	ACATGT	1 cut(s)	1534
PcsI	WCGNNNNNNNCGW	3 cut(s)	196, 532, 2531
PctI	GAATGC	2 cut(s)	1674, 1746
PdiI	GCCGGC	1 cut(s)	388
PflMI	CCANNNNNTGG	2 cut(s)	2259, 2414
PinAI	ACCGGT	1 cut(s)	2368
PkrI	GCNGC	7 cut(s)	154, 194, 385, 1067, 1887, 2072, 2251
Ple19I	CGATCG	1 cut(s)	407
PleI	GAGTC	2 cut(s)	67, 158
PmaCI	CACGTG	1 cut(s)	2137
PmlI	CACGTG	1 cut(s)	2137
PpsI	GAGTC	2 cut(s)	67, 158
Ppu21I	YACGTR	3 cut(s)	1666, 2110, 2137
PscI	ACATGT	1 cut(s)	1534
Psp124BI	GAGCTC	3 cut(s)	1115, 1200, 1976
Psp1406I	AACGTT	2 cut(s)	909, 2618
Psp6I	CCWGG	3 cut(s)	547, 1966, 2263
PspCI	CACGTG	1 cut(s)	2137
PspFI	CCCAGC	1 cut(s)	2380
PspGI	CCWGG	3 cut(s)	547, 1966, 2263
PspN4I	GGNNCC	4 cut(s)	382, 1717, 2012, 2293
PspPI	GGNCC	3 cut(s)	255, 1151, 1563
PsrI	GAACNNNNNNTAC	2 cut(s)	544, 576
PstI	CTGCAG	2 cut(s)	2251, 2596
PsuI	RGATCY	4 cut(s)	141, 1715, 2010, 2076
PvuI	CGATCG	1 cut(s)	407
PvuII	CAGCTG	1 cut(s)	2380
RsaI	GTAC	9 cut(s)	699, 739, 799, 1211, 1548, 1865, 2141, 2153, 2524
RsaNI	GTAC	9 cut(s)	698, 738, 798, 1210, 1547, 1864, 2140, 2152, 2523
RseI	CAYNNNNRTG	1 cut(s)	1539
SacI	GAGCTC	3 cut(s)	1115, 1200, 1976
SatI	GCNGC	7 cut(s)	153, 193, 384, 1066, 1886, 2071, 2250
Sau96I	GGNCC	3 cut(s)	255, 1151, 1563
SchI	GAGTC	2 cut(s)	68, 158
ScrFI	CCNGG	5 cut(s)	326, 337, 549, 1968, 2265
SduI	GDGCHC	3 cut(s)	1115, 1200, 1976
SfaNI	GCATC	4 cut(s)	986, 1314, 1714, 1880
SfcI	CTRYAG	2 cut(s)	2247, 2592
SfuI	TTCGAA	2 cut(s)	239, 2059
SinI	GGWCC	2 cut(s)	255, 1563
SmiMI	CAYNNNNRTG	1 cut(s)	1539
SnaBI	TACGTA	1 cut(s)	2110
Sse9I	AATT	5 cut(s)	422, 637, 1618, 1679, 1906
SsiI	CCGC	9 cut(s)	102, 150, 153, 193, 384, 465, 673, 2306, 2360
SspMI	CTAG	3 cut(s)	510, 1287, 2036
SstI	GAGCTC	3 cut(s)	1115, 1200, 1976
StyD4I	CCNGG	5 cut(s)	324, 335, 547, 1966, 2263
StyI	CCWWGG	1 cut(s)	1421
TasI	AATT	5 cut(s)	422, 637, 1618, 1679, 1906
TatI	WGTACW	6 cut(s)	697, 737, 1209, 1546, 1863, 2139
TauI	GCSGC	3 cut(s)	155, 195, 386
TscAI	CASTG	6 cut(s)	649, 958, 1663, 1717, 1873, 2596
TseFI	GTSAC	9 cut(s)	320, 527, 1416, 1666, 1792, 1990, 2200, 2206, 2587
TseI	GCWGC	4 cut(s)	1065, 1885, 2070, 2249
Tsp45I	GTSAC	9 cut(s)	320, 527, 1416, 1666, 1792, 1990, 2200, 2206, 2587
TspDTI	ATGAA	7 cut(s)	578, 657, 1136, 1578, 1696, 1772, 1830
TspGWI	ACGGA	6 cut(s)	559, 2003, 2331, 2425, 2454, 2540
TspRI	CASTG	6 cut(s)	649, 958, 1663, 1717, 1873, 2596
Van91I	CCANNNNNTGG	2 cut(s)	2259, 2414
VpaK11BI	GGWCC	2 cut(s)	255, 1563
XapI	RAATTY	2 cut(s)	1618, 1906
XceI	RCATGY	1 cut(s)	1538
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1964
XmiI	GTMKAC	1 cut(s)	2373
XspI	CTAG	3 cut(s)	510, 1287, 2036
ZraI	GACGTC	1 cut(s)	2242
Zsp2I	ATGCAT	1 cut(s)	979

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.