Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011080

Physical Location & Seq

Genomic Coordinates Reverse (-)

21993154 .. 21997326

Gene Structure 4173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G54200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2478 bp

ATGATGAAGATGATGATGATGAATCGAAGACGAAGCAACGTCGTTAGATTTGAAGCTAAGAAAGAAGACAAAGTAGAAGAAGAAGATAACAATGACGATTGTTTCTATGAGTCTCTAGATCGTGTACTATCGTCTTGCTCTTGTTCAACTTCAAACTCTGATTACGACTCTGACCCGAATGTTTCCGATTCGATCCACGATCCGACTCCGTTTCCTGTTCCTATGTTTACCTCTGGGTTCGAGCTGTGGAAATCTGAGCCTGAATCTGTGTCGGAGAGACGAATCAGGTTATTGCGTGGTTTGGGACTTAGTAATGAGCCGGATCTACCTCCGGCGAGTCAGTTACGTTCTAGAAGTCGGAGAAACAGTTCTCATTTCTCTAGATCGGTTCCTTCTGATGTTTTGACTTCGAATCATCATGGTAAATGTGTGTTGAGATCAGATGTATCAGGTACTGACAATGTCGATCGAGAGTATACTGGATCTCGTATGCGAAACGATGGTGTTGATTTTATAAGCAAAGAGCCAATGGAAAGATCTCTTAGGGACATTGTAGAGAAAGAGAATGGTAGAGATGTTGTTTTAGAGGAGCAAATGTGTACTATTAGGAATTTAGATACTGGGAGAGAGTTTGTGGTGAATGAAGTTCGAGAAGATGGGATGTTGGAGAGGTTGAAGGAAGTAGGTACTGATCGGCAATTGACTCTGGAGGAGTTTGAGATTTGTGTTGGTACGTCACCGATTGTGCTTGAGTTGATGAGGAGGCAAAATGTTGAAGATGTTTGTAAAGACTCTGTGGATTTGGATACTAATGTTAGTGGAAGCAGGGTGACTAAACATAGAAGGAGAGGGAGTTGGTTAAAGAGTATTAAGAATGTTGCTAGTAGTGTGACTGGGTATAAAGAGCGACGGAGCACCGATGATAGGGATTCACCGTCTGAGAGAGGTGGTCAGAGGTTTAGCTCTGCAACTGATGATAGTCGAGATATGTCTTTTCATGACCCTGAGAGAGTTAAGGTTAGGCAGTATGGGAAGTCGTGTAAAGAGCTTACTGCACTTTTCAAGAGTCAAGAGATTCAAGCTCATAAAGGATCGATATGGAGTATTAAGTTTAGTTTGGATGGGAGGTATCTTGCTAGTGCTGGTGAGGATTGTGTTATTCAGATTTGGAAGGTTGTTGAGTCAGAAAGAAAAGGGGAACTCTTGTCGATGGATAAACAAGAAGATGGAAGTATAAATTTGTTTCTTTTAGCAAATGGATCACCCGAACCCGTTTCAATGTCTCCAAAGAGAAGAGGAAGAACATCTTTTAGCCGAAAATCAGTGAGCTTGGACAATGTTCTTGTTCCAGAGGCAGTCTTTGGTCTTTCAGAGAAACCCGTGTGTTCATTTGTAGGGCATTTGGATGACGTACTTGATCTTTCGTGGTCAAAATCTCAGCACCTGCTTTCCTCTTCCATGGATAAGACTGTTCGTCTATGGGACTTATCTAGCAAGACATGTTTGAAAGTCTTCTCACATAGTGACTACGTGACTTGCATCCAGTTTAATCCCGTGGATGACAATTACTTCATCAGCGGATCATTGGATGCAAAAGTTCGGATATGGAGTATTCCTGATCATCAAGTTGTTGATTGGAATGATCTTCATGAGATGGTCACAGCTGCTTGCTACACACCGGATGGACAGGGTGCATTGGTTGGTTCATACAAAGGAACATGCTGCTTATACAACACACATGATAACAAACTGCAGCAGAGACGCGAAATCAATCTGAAGAACAGGAAAAAGAAAACCCATCACAAGAAAATCACTGGTTTTCAGTTTGTGGCAGGAAGTTCATCGGAAGTTCTCGTCACATCTGCAGATTCACGTACGCGTGTTGTTGATGGTGTTGACCTTGTTCACAAGTTTAAAGGATTTCGCAACACGAATAGCCAAATCTCGGCTTCACTTACATCAAACGGGAAATTCCTAGTATCAGCAAGCGAAGACTCTAATGTGTATGTATGGAACTACGACTCAGACTCTCGAGCAGGAAGAAGCAAACGTGTCACAGTCACAAACTCATACGAAAACTTTTATTGTCGTGACGTCTCTGTGGCTGCACCTTGGCCTGGCAAAATCAGTAACAACCACACTAACAACAGCCCCGAACAGTCATCCTTCACAGCCAATAATAACCCTCCGACACCTGTCAACGATCCAACCAACAACAAAACCGTCACCAACGGTATCATTTCAAGCGCCACAAACCGATACTTCTTCGATAGAGTCTCAGCAACATGGCCTGAAGAAAAACTCTTGCTGGCTGCAAAAAACCGAGCCAGAACAAGCCCTCGTGTGAGCGTGGACATGTCTAACATACAGGTTAACACAAAACCGAGTGCCTCGGCGTGGTCTATGGTGATTGTGACTGGCAGTCTACGAGGCGAAATCAGAATATTTCAGAATTTTGGATTTCCAGTTCGTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0010008 GO:0012505 GO:0016020 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048471 GO:0097708 GO:0098588 GO:0098791 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

825

Amino Acids

93.02

Weight (kDa)

7.82

Isoelectric Point (pI)

45.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_THOC3	PF25174	355 - 394	2.6e-07	THOC3 beta-propeller domain
WD40	PF00400	357 - 390	2.2e-07	WD domain, G-beta repeat
Beta-prop_WDR5	PF25175	359 - 398	1.7e-06	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	457 - 538	1.4e-13	WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	458 - 521	1.4e-08	WDR36/Utp21 second beta-propeller domain
WD40_Prp19	PF24814	458 - 584	4.7e-13	Prp19 WD40 domain
Beta-prop_WDR5	PF25175	459 - 677	1.3e-33	WDR5 beta-propeller domain
WD40	PF00400	459 - 495	2e-07	WD domain, G-beta repeat
WD40_WDHD1_1st	PF24817	461 - 583	1.6e-07	WDHD1 first WD40 domain
WD40_CDC20-Fz	PF24807	461 - 544	3.9e-09	CDC20/Fizzy WD40 domain
WD40_Gbeta	PF25391	462 - 538	8.3e-06	G protein beta WD-40 repeat protein
Beta-prop_THOC3	PF25174	463 - 504	3.2e-06	THOC3 beta-propeller domain
EIF3I	PF24805	463 - 660	5.5e-09	EIF3I
Beta-prop_CAF1B_HIR1	PF24105	464 - 544	1.4e-11	CAF1B/HIR1 beta-propeller domain
Beta-prop_IFT122_1st	PF23381	464 - 580	3.4e-06	IFT122 first beta-propeller
WDR55	PF24796	467 - 587	2.5e-06	WDR55
Beta-prop_THOC3	PF25174	468 - 674	4.3e-22	THOC3 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	470 - 674	4.2e-13	WDR3 second beta-propeller domain
Beta-prop_Aladin	PF25460	470 - 585	1.1e-09	Aladin seven-bladed propeller
Beta-prop_WDR90_POC16_2nd	PF23393	479 - 589	1.2e-09	WDR90/POC16, second beta-propeller
WD40_Gbeta	PF25391	482 - 672	2.5e-08	G protein beta WD-40 repeat protein
WD40	PF00400	500 - 537	5.5e-06	WD domain, G-beta repeat
WD40_WDHD1_1st	PF24817	508 - 682	1.7e-10	WDHD1 first WD40 domain
Beta-prop_EML_2	PF23414	521 - 712	1.3e-11	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_1st	PF25173	542 - 675	1.6e-06	WDR3 first beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0011080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15470 AT5G54200
fragaria_vesca	FvH4_3g20610 FvH4_3g20610
malus_domestica	MD03G1223700.v1.1 MD11G1241600.v1.1
prunus_persica	Prupe.4G185800_v2.0.a1 Prupe.4G185800_v2.0.a1
pyrus_communis	pycom03g17200 pycom03g17210 pycom11g21320
rosa_chinensis	RchiOBHm_Chr5g0034631
rosa_laevigata	RLG00000033560
rosa_roxburghii	Rroxscaffold_1G00045690
rosa_rugosa	Rorug05G0147300
rosa_samantha	Rh5AG239300 Rh5BG240000 Rh5CG270400 Rh5DG248200
rosa_wichuraiana	Rw5G021930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	515
AarI	CACCTGC	1 cut(s)	1452
AatII	GACGTC	1 cut(s)	2097
Acc36I	ACCTGC	1 cut(s)	1452
AccI	GTMKAC	2 cut(s)	476, 2425
AccII	CGCG	2 cut(s)	1764, 1879
AciI	CCGC	1 cut(s)	1578
AclWI	GGATC	8 cut(s)	187, 194, 330, 490, 1099, 1267, 1588, 2198
AcsI	RAATTY	4 cut(s)	610, 1237, 1970, 2452
AcuI	CTGAAG	2 cut(s)	1796, 2313
AcyI	GRCGYC	1 cut(s)	2094
AdeI	CACNNNGTG	1 cut(s)	1523
AfaI	GTAC	7 cut(s)	126, 454, 601, 688, 733, 1413, 1876
AfiI	CCNNNNNNNGG	4 cut(s)	924, 1945, 2117, 2397
AflIII	ACRYGT	4 cut(s)	1499, 1877, 2050, 2355
AhdI	GACNNNNNGTC	2 cut(s)	1473, 2421
AjnI	CCWGG	1 cut(s)	2116
AloI	GAACNNNNNNTCC	3 cut(s)	352, 384, 2451
AluBI	AGCT	7 cut(s)	56, 244, 963, 1048, 1082, 1329, 1664
AluI	AGCT	7 cut(s)	56, 244, 963, 1048, 1082, 1329, 1664
Alw21I	GWGCWC	1 cut(s)	917
Alw26I	GTCTC	6 cut(s)	117, 271, 1287, 1753, 2101, 2281
AlwI	GGATC	8 cut(s)	187, 194, 330, 490, 1099, 1267, 1588, 2198
AlwNI	CAGNNNCTG	2 cut(s)	455, 1444
Ama87I	CYCGRG	1 cut(s)	2031
AoxI	GGCC	2 cut(s)	2114, 2288
ApeKI	GCWGC	5 cut(s)	1664, 1722, 1753, 2105, 2312
ApoI	RAATTY	4 cut(s)	610, 1237, 1970, 2452
Asp700I	GAANNNNTTC	2 cut(s)	367, 1511
AspLEI	GCGC	1 cut(s)	2249
AsuHPI	GGTGA	8 cut(s)	649, 729, 841, 924, 1157, 1254, 2218, 2419
AsuII	TTCGAA	1 cut(s)	410
AvaI	CYCGRG	1 cut(s)	2031
BaeI	ACNNNNGTAYC	2 cut(s)	798, 831
BauI	CACGAG	1 cut(s)	2340
BbsI	GAAGAC	4 cut(s)	34, 72, 1504, 1998
Bbv12I	GWGCWC	1 cut(s)	917
BbvI	GCAGC	5 cut(s)	1651, 1709, 1765, 2092, 2299
BccI	CCATC	9 cut(s)	494, 650, 1115, 1204, 1220, 1648, 1676, 1806, 1883
BciT130I	CCWGG	1 cut(s)	2118
BciVI	GTATCC	1 cut(s)	799
BclI	TGATCA	1 cut(s)	1618
BcoDI	GTCTC	6 cut(s)	117, 271, 1287, 1753, 2101, 2281
BfaI	CTAG	7 cut(s)	116, 351, 381, 882, 1137, 1491, 1976
BfmI	CTRYAG	2 cut(s)	1751, 1863
BfoI	RGCGCY	1 cut(s)	2250
BfuAI	ACCTGC	1 cut(s)	1452
BfuI	GTATCC	1 cut(s)	799
BglII	AGATCT	1 cut(s)	536
BisI	GCNGC	5 cut(s)	1665, 1723, 1754, 2106, 2313
BlsI	GCNGC	5 cut(s)	1666, 1724, 1755, 2107, 2314
Bme1390I	CCNGG	1 cut(s)	2118
BmeRI	GACNNNNNGTC	2 cut(s)	1473, 2421
BmeT110I	CYCGRG	1 cut(s)	2031
BmiI	GGNNCC	1 cut(s)	390
BmrFI	CCNGG	1 cut(s)	2118
BmrI	ACTGGG	2 cut(s)	630, 903
BmsI	GCATC	2 cut(s)	1548, 1579
BmuI	ACTGGG	2 cut(s)	630, 903
BoxI	GACNNNNGTC	1 cut(s)	2195
BpiI	GAAGAC	4 cut(s)	34, 72, 1504, 1998
BpmI	CTGGAG	1 cut(s)	728
Bpu14I	TTCGAA	1 cut(s)	410
BpuEI	CTTGAG	1 cut(s)	770
Bsa29I	ATCGAT	1 cut(s)	1094
BsaAI	YACGTR	2 cut(s)	1531, 1874
BsaHI	GRCGYC	1 cut(s)	2094
BsaJI	CCNNGG	4 cut(s)	1458, 1554, 2111, 2391
BsaWI	WCCGGW	1 cut(s)	1678
BsaXI	ACNNNNNCTCC	6 cut(s)	352, 382, 581, 611, 838, 868
Bsc4I	CCNNNNNNNGG	4 cut(s)	924, 1945, 2117, 2397
Bse1I	ACTGG	7 cut(s)	484, 625, 898, 1543, 1819, 2422, 2465
BseBI	CCWGG	1 cut(s)	2118
BseCI	ATCGAT	1 cut(s)	1094
BseDI	CCNNGG	4 cut(s)	1458, 1554, 2111, 2391
BseGI	GGATG	8 cut(s)	666, 1126, 1411, 1539, 1564, 1594, 1687, 2162
BseLI	CCNNNNNNNGG	4 cut(s)	924, 1945, 2117, 2397
BseMII	CTCAG	6 cut(s)	246, 930, 996, 1451, 2037, 2292
BseNI	ACTGG	7 cut(s)	484, 625, 898, 1543, 1819, 2422, 2465
BseRI	GAGGAG	3 cut(s)	602, 725, 775
BseXI	GCAGC	5 cut(s)	1651, 1709, 1765, 2092, 2299
BsgI	GTGCAG	2 cut(s)	1038, 2091
Bsh1236I	CGCG	2 cut(s)	1764, 1879
Bsh1285I	CGRYCG	1 cut(s)	469
BshFI	GGCC	2 cut(s)	2116, 2290
BshVI	ATCGAT	1 cut(s)	1094
BsiEI	CGRYCG	1 cut(s)	469
BsiHKAI	GWGCWC	1 cut(s)	917
BsiHKCI	CYCGRG	1 cut(s)	2031
BsiSI	CCGG	3 cut(s)	320, 332, 1679
BsiWI	CGTACG	1 cut(s)	1874
BslFI	GGGAC	3 cut(s)	318, 560, 1496
BslI	CCNNNNNNNGG	4 cut(s)	924, 1945, 2117, 2397
BsmAI	GTCTC	6 cut(s)	117, 271, 1287, 1753, 2101, 2281
BsmBI	CGTCTC	3 cut(s)	271, 1753, 2101
BsmFI	GGGAC	3 cut(s)	318, 560, 1496
BsnI	GGCC	2 cut(s)	2116, 2290
BsoBI	CYCGRG	1 cut(s)	2031
Bsp119I	TTCGAA	1 cut(s)	410
Bsp1286I	GDGCHC	1 cut(s)	917
Bsp19I	CCATGG	1 cut(s)	1458
BspACI	CCGC	1 cut(s)	1578
BspANI	GGCC	2 cut(s)	2116, 2290
BspCNI	CTCAG	6 cut(s)	247, 931, 997, 1450, 2036, 2291
BspDI	ATCGAT	1 cut(s)	1094
BspFNI	CGCG	2 cut(s)	1764, 1879
BspHI	TCATGA	2 cut(s)	997, 1648
BspLI	GGNNCC	1 cut(s)	390
BspMAI	CTGCAG	2 cut(s)	1755, 1867
BspMI	ACCTGC	1 cut(s)	1452
BspPI	GGATC	8 cut(s)	187, 194, 330, 490, 1099, 1267, 1588, 2198
BspT104I	TTCGAA	1 cut(s)	410
BsrI	ACTGG	7 cut(s)	484, 625, 898, 1543, 1819, 2422, 2465
BssECI	CCNNGG	4 cut(s)	1458, 1554, 2111, 2391
BssNAI	GTATAC	1 cut(s)	477
BssNI	GRCGYC	1 cut(s)	2094
BssSI	CACGAG	1 cut(s)	2340
BssT1I	CCWWGG	2 cut(s)	1458, 2111
Bst1107I	GTATAC	1 cut(s)	477
Bst2BI	CACGAG	1 cut(s)	2340
Bst2UI	CCWGG	1 cut(s)	2118
Bst4CI	ACNGT	7 cut(s)	368, 936, 1471, 2059, 2160, 2224, 2234
Bst6I	CTCTTC	2 cut(s)	1288, 1459
BstACI	GRCGYC	1 cut(s)	2094
BstBAI	YACGTR	2 cut(s)	1531, 1874
BstBI	TTCGAA	1 cut(s)	410
BstC8I	GCNNGC	3 cut(s)	1669, 1987, 2310
BstDEI	CTNAG	9 cut(s)	57, 255, 308, 542, 939, 1005, 1437, 2023, 2278
BstDSI	CCRYGG	2 cut(s)	1458, 1554
BstF5I	GGATG	8 cut(s)	666, 1126, 1411, 1539, 1564, 1594, 1687, 2162
BstFNI	CGCG	2 cut(s)	1764, 1879
BstH2I	RGCGCY	1 cut(s)	2250
BstHHI	GCGC	1 cut(s)	2249
BstMAI	GTCTC	6 cut(s)	117, 271, 1287, 1753, 2101, 2281
BstMCI	CGRYCG	1 cut(s)	469
BstNI	CCWGG	1 cut(s)	2118
BstNSI	RCATGY	3 cut(s)	1503, 1722, 2359
BstPAI	GACNNNNGTC	1 cut(s)	2195
BstSCI	CCNGG	1 cut(s)	2116
BstSFI	CTRYAG	2 cut(s)	1751, 1863
BstUI	CGCG	2 cut(s)	1764, 1879
BstV1I	GCAGC	5 cut(s)	1651, 1709, 1765, 2092, 2299
BstV2I	GAAGAC	4 cut(s)	34, 72, 1504, 1998
BstX2I	RGATCY	3 cut(s)	322, 482, 536
BstYI	RGATCY	3 cut(s)	322, 482, 536
BstZ17I	GTATAC	1 cut(s)	477
Bsu15I	ATCGAT	1 cut(s)	1094
BsuI	GTATCC	1 cut(s)	799
BsuRI	GGCC	2 cut(s)	2116, 2290
BsuTUI	ATCGAT	1 cut(s)	1094
BtgI	CCRYGG	2 cut(s)	1458, 1554
BtsCI	GGATG	8 cut(s)	666, 1126, 1411, 1539, 1564, 1594, 1687, 2162
BtsIMutI	CAGTG	2 cut(s)	1329, 1812
BveI	ACCTGC	1 cut(s)	1452
Cac8I	GCNNGC	3 cut(s)	1669, 1987, 2310
CaiI	CAGNNNCTG	2 cut(s)	455, 1444
CciI	TCATGA	2 cut(s)	997, 1648
CfoI	GCGC	1 cut(s)	2249
ClaI	ATCGAT	1 cut(s)	1094
CseI	GACGC	1 cut(s)	1770
Csp6I	GTAC	7 cut(s)	125, 453, 600, 687, 732, 1412, 1875
CviAII	CATG	9 cut(s)	419, 998, 1459, 1500, 1649, 1719, 1739, 2286, 2356
CviQI	GTAC	7 cut(s)	125, 453, 600, 687, 732, 1412, 1875
DdeI	CTNAG	9 cut(s)	57, 255, 308, 542, 939, 1005, 1437, 2023, 2278
DraI	TTTAAA	1 cut(s)	1915
DraIII	CACNNNGTG	1 cut(s)	1523
DriI	GACNNNNNGTC	2 cut(s)	1473, 2421
Eam1104I	CTCTTC	2 cut(s)	1288, 1459
Eam1105I	GACNNNNNGTC	2 cut(s)	1473, 2421
EarI	CTCTTC	2 cut(s)	1288, 1459
Eco130I	CCWWGG	2 cut(s)	1458, 2111
Eco57I	CTGAAG	2 cut(s)	1796, 2313
Eco88I	CYCGRG	1 cut(s)	2031
EcoRII	CCWGG	1 cut(s)	2116
EcoT14I	CCWWGG	2 cut(s)	1458, 2111
ErhI	CCWWGG	2 cut(s)	1458, 2111
Esp3I	CGTCTC	3 cut(s)	271, 1753, 2101
FaeI	CATG	9 cut(s)	422, 1001, 1462, 1503, 1652, 1722, 1742, 2289, 2359
FalI	AAGNNNNNCTT	2 cut(s)	1291, 1323
FaqI	GGGAC	3 cut(s)	318, 560, 1496
FatI	CATG	9 cut(s)	418, 997, 1458, 1499, 1648, 1718, 1738, 2285, 2355
FbaI	TGATCA	1 cut(s)	1618
FblI	GTMKAC	2 cut(s)	476, 2425
Fnu4HI	GCNGC	5 cut(s)	1665, 1723, 1754, 2106, 2313
FokI	GGATG	8 cut(s)	673, 1133, 1418, 1526, 1571, 1601, 1694, 2149
Fsp4HI	GCNGC	5 cut(s)	1665, 1723, 1754, 2106, 2313
FspBI	CTAG	7 cut(s)	116, 351, 381, 882, 1137, 1491, 1976
GlaI	GCGC	1 cut(s)	2248
GluI	GCNGC	5 cut(s)	1665, 1723, 1754, 2106, 2313
GsuI	CTGGAG	1 cut(s)	728
HaeII	RGCGCY	1 cut(s)	2250
HaeIII	GGCC	2 cut(s)	2116, 2290
HapII	CCGG	3 cut(s)	320, 332, 1679
HgaI	GACGC	1 cut(s)	1770
HhaI	GCGC	1 cut(s)	2249
Hin1I	GRCGYC	1 cut(s)	2094
Hin1II	CATG	9 cut(s)	422, 1001, 1462, 1503, 1652, 1722, 1742, 2289, 2359
Hin6I	GCGC	1 cut(s)	2247
HinP1I	GCGC	1 cut(s)	2247
HincII	GTYRAC	3 cut(s)	1897, 2200, 2374
HindII	GTYRAC	3 cut(s)	1897, 2200, 2374
HpaI	GTTAAC	1 cut(s)	2374
HpaII	CCGG	3 cut(s)	320, 332, 1679
HphI	GGTGA	8 cut(s)	649, 729, 841, 924, 1157, 1254, 2218, 2419
Hpy99I	CGWCG	2 cut(s)	44, 912
HpyAV	CCTTC	5 cut(s)	402, 670, 837, 1165, 2176
HpyCH4III	ACNGT	7 cut(s)	368, 936, 1471, 2059, 2160, 2224, 2234
HpyCH4IV	ACGT	8 cut(s)	39, 346, 734, 1410, 1530, 1873, 2050, 2094
HpyCH4V	TGCA	9 cut(s)	968, 1055, 1539, 1592, 1694, 1753, 1865, 2108, 2315
HpyF3I	CTNAG	9 cut(s)	57, 255, 308, 542, 939, 1005, 1437, 2023, 2278
HpySE526I	ACGT	8 cut(s)	39, 346, 734, 1410, 1530, 1873, 2050, 2094
Hsp92I	GRCGYC	1 cut(s)	2094
Hsp92II	CATG	9 cut(s)	422, 1001, 1462, 1503, 1652, 1722, 1742, 2289, 2359
HspAI	GCGC	1 cut(s)	2247
Ksp22I	TGATCA	1 cut(s)	1618
KspAI	GTTAAC	1 cut(s)	2374
LmnI	GCTCC	2 cut(s)	589, 912
Lsp1109I	GCAGC	5 cut(s)	1651, 1709, 1765, 2092, 2299
LweI	GCATC	2 cut(s)	1548, 1579
MaeI	CTAG	7 cut(s)	116, 351, 381, 882, 1137, 1491, 1976
MaeII	ACGT	8 cut(s)	39, 346, 734, 1410, 1530, 1873, 2050, 2094
MfeI	CAATTG	1 cut(s)	698
MflI	RGATCY	3 cut(s)	322, 482, 536
MhlI	GDGCHC	1 cut(s)	917
MluCI	AATT	6 cut(s)	610, 698, 1237, 1564, 1970, 2452
MluI	ACGCGT	1 cut(s)	1877
MmeI	TCCRAC	6 cut(s)	227, 252, 338, 645, 2213, 2231
MroXI	GAANNNNTTC	2 cut(s)	367, 1511
MseI	TTAA	7 cut(s)	860, 870, 1014, 1107, 1548, 1914, 2373
MslI	CAYNNNNRTG	1 cut(s)	1404
MspA1I	CMGCKG	2 cut(s)	1578, 1664
MspI	CCGG	3 cut(s)	320, 332, 1679
MspR9I	CCNGG	1 cut(s)	2118
MunI	CAATTG	1 cut(s)	698
MvaI	CCWGG	1 cut(s)	2118
MvnI	CGCG	2 cut(s)	1764, 1879
NcoI	CCATGG	1 cut(s)	1458
NlaIII	CATG	9 cut(s)	422, 1001, 1462, 1503, 1652, 1722, 1742, 2289, 2359
NlaIV	GGNNCC	1 cut(s)	390
NmeAIII	GCCGAG	2 cut(s)	1925, 2372
NspI	RCATGY	3 cut(s)	1503, 1722, 2359
NspV	TTCGAA	1 cut(s)	410
PaeR7I	CTCGAG	1 cut(s)	2031
PagI	TCATGA	2 cut(s)	997, 1648
PaqCI	CACCTGC	1 cut(s)	1452
PciI	ACATGT	2 cut(s)	1499, 2355
PdmI	GAANNNNTTC	2 cut(s)	367, 1511
PfeI	GAWTC	8 cut(s)	22, 188, 263, 282, 412, 929, 1075, 1868
Pfl23II	CGTACG	1 cut(s)	1874
PflFI	GACNNNGTC	1 cut(s)	461
PkrI	GCNGC	5 cut(s)	1666, 1724, 1755, 2107, 2314
Ple19I	CGATCG	1 cut(s)	469
Ppu21I	YACGTR	2 cut(s)	1531, 1874
PscI	ACATGT	2 cut(s)	1499, 2355
PshAI	GACNNNNGTC	1 cut(s)	2195
PsiI	TTATAA	1 cut(s)	515
Psp6I	CCWGG	1 cut(s)	2116
PspGI	CCWGG	1 cut(s)	2116
PspLI	CGTACG	1 cut(s)	1874
PspN4I	GGNNCC	1 cut(s)	390
PstI	CTGCAG	2 cut(s)	1755, 1867
PstNI	CAGNNNCTG	2 cut(s)	455, 1444
PsuI	RGATCY	3 cut(s)	322, 482, 536
PsyI	GACNNNGTC	1 cut(s)	461
PvuI	CGATCG	1 cut(s)	469
PvuII	CAGCTG	1 cut(s)	1664
RsaI	GTAC	7 cut(s)	126, 454, 601, 688, 733, 1413, 1876
RsaNI	GTAC	7 cut(s)	125, 453, 600, 687, 732, 1412, 1875
RseI	CAYNNNNRTG	1 cut(s)	1404
SaqAI	TTAA	7 cut(s)	860, 870, 1014, 1107, 1548, 1914, 2373
SatI	GCNGC	5 cut(s)	1665, 1723, 1754, 2106, 2313
ScrFI	CCNGG	1 cut(s)	2118
SduI	GDGCHC	1 cut(s)	917
SfaNI	GCATC	2 cut(s)	1548, 1579
SfcI	CTRYAG	2 cut(s)	1751, 1863
Sfr274I	CTCGAG	1 cut(s)	2031
SfuI	TTCGAA	1 cut(s)	410
SlaI	CTCGAG	1 cut(s)	2031
SmiMI	CAYNNNNRTG	1 cut(s)	1404
SmlI	CTYRAG	2 cut(s)	749, 2031
SmoI	CTYRAG	2 cut(s)	749, 2031
Sse9I	AATT	6 cut(s)	610, 698, 1237, 1564, 1970, 2452
SsiI	CCGC	1 cut(s)	1578
SspI	AATATT	1 cut(s)	2445
SspMI	CTAG	7 cut(s)	116, 351, 381, 882, 1137, 1491, 1976
StyD4I	CCNGG	1 cut(s)	2116
StyI	CCWWGG	2 cut(s)	1458, 2111
TaaI	ACNGT	7 cut(s)	368, 936, 1471, 2059, 2160, 2224, 2234
TaiI	ACGT	8 cut(s)	42, 349, 737, 1413, 1533, 1876, 2053, 2097
TasI	AATT	6 cut(s)	610, 698, 1237, 1564, 1970, 2452
TatI	WGTACW	2 cut(s)	124, 599
TfiI	GAWTC	8 cut(s)	22, 188, 263, 282, 412, 929, 1075, 1868
Tru1I	TTAA	7 cut(s)	860, 870, 1014, 1107, 1548, 1914, 2373
Tru9I	TTAA	7 cut(s)	860, 870, 1014, 1107, 1548, 1914, 2373
TscAI	CASTG	2 cut(s)	1329, 1819
TseI	GCWGC	5 cut(s)	1664, 1722, 1753, 2105, 2312
TspDTI	ATGAA	9 cut(s)	20, 35, 657, 986, 1377, 1561, 1637, 1695, 1830
TspGWI	ACGGA	2 cut(s)	198, 925
TspRI	CASTG	2 cut(s)	1329, 1819
Tth111I	GACNNNGTC	1 cut(s)	461
XapI	RAATTY	4 cut(s)	610, 1237, 1970, 2452
XbaI	TCTAGA	3 cut(s)	115, 350, 380
XceI	RCATGY	3 cut(s)	1503, 1722, 2359
XhoI	CTCGAG	1 cut(s)	2031
XmiI	GTMKAC	2 cut(s)	476, 2425
XmnI	GAANNNNTTC	2 cut(s)	367, 1511
XspI	CTAG	7 cut(s)	116, 351, 381, 882, 1137, 1491, 1976
ZraI	GACGTC	1 cut(s)	2095

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.