Rroxscaffold_1G00045690

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0011080
Physical Location & Seq
Forward (+)
64860644 .. 64866403
5760 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00045690.1

Sequence Viewer

Length: 2964 bp
ATGAGCAAAGCCGGGGAGGAAGAAGACGAAGACGAGTGCTTCTACGAGTCCCTCGATCGCATTCTCGTCTCCTCCTCCTCCTCCTCCTGTTCTTGCTCCACCTCCACCTCCGACGACGACGACGCCGCCGCCGCCGCCGTCTCTTCTTCTTCTTCTTCTCCCAATTATGCTTCCCGCAAGCGCTTTCCCACCCCAAAGTTCCCAATGGGGGCCTACAAGTACGACGTCTGGATCTCCGAGCCCGCCTCCGTCTCCGACCGCCGCTTACGTCTCCTCCGCGAAATGGGCCTCAGCGGCGACCCGGCCCTCTCGCGCGCCAAGCCCGACCCGGTGGGCTGCTCGGCGTCGTCGGATCATTTGACTAAACGACACAGCCCTCCCGCCGTTCCGGAAATCGTCCGGTCCAAATCAGACGGCGTCGAACACTGCAACGGCGCTGCATCCGCTAGTTCGTCGCCTATTCTTTGTTCCGAGATTGAGGCTCCGGCTCCGGCCGAGACCGAGACCGAGACCAAAAATTCGTTTGTAAATACACAGAAAAAAAAAGATTGCGTTTGTAAATCGGCGAGCGGCAAGAGCAATAGACCGTCTCCGCCGCCGCCGAATAGGCCGCCGTCCGGGAAGAACGGCCGGCGGTGCGGCGACGAGATTCTGTTAGAGGTGGAGGAGGAGGAGAGTGAAGTGTGTACTATTCGGAATCTTGATAATGGGAAGGAGTTTGTGGTGAATGAGATCAGGGAAGATGGGATGTGGAACAAGCTTAAGGAAGTGGGGACCGGGAAGCAGTTGACCATGGAGGAGTTTGAGATGAGTGTGGGCCATTCCCCCATTGTTCAGGAACTGATGCGGCGGCAGAATGTGGAGGAGAGTCACAAGGCCGGCGGCGGCGGTGGTGGTTCGGATTCGAATGCCAATGGGGGCGGTGGCGGGATTCCCAAGTTGAAGAAGAGGGGTTGGTTCAAGAGCATCAAGAGTGTTGCGAGTACTGTGACTGGGCATAAGGAGAGAAGGAGCAGTGATGAGAGGGACACGTCGTCGGAGAAGGGGGCCGGAGGTCAAGCTCTGCCACGGATGATAGCCAGGATAGTGAGGGTCAGGCAGTATGCCAAGTCTTGTAAGGAGCTAACGGCTGTGTACAAGACACAGGAGATTCAGGCGCATAATGGGTCTATTTGGAGTATTAAGTTTAGCTTGGATGGGAAGTATCTGGCGAGTGCCGGTGAGGATTGTGTGATTCATATATGGCAGGTGATGGAGACCGAGAGGAAGGGTGACCTGTTGATGCAGAAGTCAGAAGATAACAATTTGGATTTGTTGTTTATTGCCAATGGATCTTCAGAACCATGTTCCGTCTCGCCCAATAGTTACAGCCATCTGGAAAAAAAGAAGAGAGGGAGGACGTCTATCAGTCGGAAATCATTGAGTTTGGAACATTATGTGATTCCAGAGACTATGTTTGCACTTTCAGAAAAGCCCATCTGTTCATTCCAAGGTCATGTAGATGATGTGCTTGACCTCTCTTGGTCCAAGTCTCAGCGCCTGCTCTCATCTTCTATGGATAAAACGGTGCACCTCTGGGATTTGCCTAGCAAGTCATGTTTGCAGAAGTTTTCACACATTGACTATGTAACTTGCATCCAGTTTAATCCCGTTGATGATAACTACTTCATTAGTGGATCACTTGATGCTAAGGTTCGTATATGGAGCATCACTGATCGCCAAGTGGTTGATTGGAATGATATGCATGAGATGGTCACTGCTGCTTGCTACACTCCTGATGGCCAGGGTGCTCTAGTTGGAACCTACAAAGGGAACTGCCGGTTATACAACACATCTGATAATAAGTTGCAAGAGAAAAGCCAAATAAATCTGCAGAACAAGAAAAAGAAATCTCATCACAAGAAAATTACTGGTTTCCAGTTTGCACCAGGAAGTTCCTCGGAAGTACTAGTTACATCTGCAGATTCACGAGTCAGGGTTGTCGATGGTATTGATCTAGTTCACAAGTTCAAGGGATTTCGTAACACAAATAGCCAAATCTCAGCAACCCTCACAGCAAACGGTAAATATGTGGTATCTGCCAGCGAGGATTCTCATGTATATATATGGAAACATGAAGCTGATTCGCGCCCTAGTAGAAGCAAAAGTGTTACTGTTACACGGTCGTATGAGCATTTTCATAGTCACAATGTATCAGTGGCCGTCTCTTGGCCTGGTGTTGGTGATTCATGGGGACTACAAGATGGAGATCAAAATGGACTTGGACTTGACAACAATCTTGATGAGGTTTCTACAGCCAATCATCCCCCTACTCCTGTTGAGGAGGATAATTGCAAGGATGGTTCACGATCAGCATCGGGTTGCACCAATAGCCCTCTCCATGGAACAATTACTAGTGCATCCAACAGTTACTTCTTTGATAGAATTTCGGCAACGTGGCCTGAGGAAAAACTTCCTCTAGCTACTAAGAAACGAAGCCCTCGTGTAAGTTTTGATTTTAGCAATGGTGTAAGCCAGAACATTCCGGCCTGGGGTATGGTGATTGTAACCGCTGGCTTGGGAGTGAGCTCTAAGTGGGCTCAGGCCTTGGGATATTTTAATGAGCTAGGCTTGAATAAGTGGGCTCAGGCCTCTTGGCATTTCTTGATTCCAATTTCCATATACAACAGTAGCACTACCTTAACCTTTGCTCGTTTTTCTCTTTGGTCAATTCCAGACAAATCTGGATATTGTGGCTCACTTCCTGCCCACAATGCCCTGTCCTGTACTTCACTAATTCACTTGTTTGTACAGAGACCCAAAATTAGAGCTCTTTCTTGTGTGCGCACTCCGCAGGGGCATCCCATGACTCAACAGAGTGGGGGCACCAAAATTATCTCCCTTCCTAGGTACACCCAACCCAGAAAAGATTTCAAAGAAAATATCAAGAGAAATCCCAACCTCAAAACCTCATTGGTTGCTTGA

Protein Analysis

987

Amino Acids

108.43

Weight (kDa)

8.35

Isoelectric Point (pI)

51.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_THOC3 PF25174 379 - 419 1.7e-07 THOC3 beta-propeller domain
WD40 PF00400 382 - 415 1.6e-07 WD domain, G-beta repeat
Beta-prop_WDR5 PF25175 384 - 424 1.9e-06 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 489 - 570 1.5e-12 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 490 - 616 6.5e-14 Prp19 WD40 domain
Beta-prop_WDR5 PF25175 491 - 707 3.3e-34 WDR5 beta-propeller domain
WD40 PF00400 491 - 527 2.6e-07 WD domain, G-beta repeat
Beta-prop_WDR36-Utp21_2nd PF25168 491 - 553 9.3e-08 WDR36/Utp21 second beta-propeller domain
WD40_CDC20-Fz PF24807 492 - 586 1.1e-10 CDC20/Fizzy WD40 domain
EIF3I PF24805 492 - 692 2.2e-09 EIF3I
WDR55 PF24796 493 - 620 2.2e-06 WDR55
Beta-prop_THOC3 PF25174 495 - 538 3.6e-06 THOC3 beta-propeller domain
Beta-prop_CAF1B_HIR1 PF24105 496 - 575 1.6e-10 CAF1B/HIR1 beta-propeller domain
Beta-prop_IFT122_1st PF23381 496 - 612 4e-07 IFT122 first beta-propeller
Beta-prop_Aladin PF25460 498 - 620 3.8e-09 Aladin seven-bladed propeller
Beta-prop_THOC3 PF25174 499 - 706 8.4e-23 THOC3 beta-propeller domain
Beta-prop_WDR3_2nd PF25172 502 - 703 8.3e-12 WDR3 second beta-propeller domain
Beta-prop_WDR90_POC16_2nd PF23393 511 - 617 7.2e-08 WDR90/POC16, second beta-propeller
WD40_WDHD1_1st PF24817 542 - 711 1.4e-11 WDHD1 first WD40 domain
Beta-prop_EML_2 PF23414 553 - 714 1.8e-12 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_1st PF25173 573 - 705 1.1e-07 WDR3 first beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011080)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15470 AT5G54200
fragaria_vesca FvH4_3g20610 FvH4_3g20610
malus_domestica MD03G1223700.v1.1 MD11G1241600.v1.1
prunus_persica Prupe.4G185800_v2.0.a1 Prupe.4G185800_v2.0.a1
pyrus_communis pycom03g17200 pycom03g17210 pycom11g21320
rosa_chinensis RchiOBHm_Chr5g0034631
rosa_laevigata RLG00000033560
rosa_roxburghii Rroxscaffold_1G00045690
rosa_rugosa Rorug05G0147300
rosa_samantha Rh5AG239300 Rh5BG240000 Rh5CG270400 Rh5DG248200
rosa_wichuraiana Rw5G021930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1237
AatII GACGTC 2 cut(s) 228, 1403
Acc16I TGCGCA 1 cut(s) 2825
Acc36I ACCTGC 1 cut(s) 1237
AccB1I GGYRCC 1 cut(s) 2864
AccBSI CCGCTC 1 cut(s) 570
AccII CGCG 4 cut(s) 279, 313, 315, 2128
AccIII TCCGGA 1 cut(s) 388
AclWI GGATC 4 cut(s) 239, 360, 1339, 1684
AcoI YGGCCR 4 cut(s) 492, 628, 1780, 2199
AcsI RAATTY 2 cut(s) 517, 2424
AcuI CTGAAG 1 cut(s) 1320
AcyI GRCGYC 5 cut(s) 123, 225, 344, 417, 1400
AfaI GTAC 8 cut(s) 221, 688, 985, 1136, 1947, 2767, 2790, 2891
AfeI AGCGCT 1 cut(s) 182
AfiI CCNNNNNNNGG 9 cut(s) 208, 283, 617, 1809, 2208, 2219, 2381, 2531, 2886
AflII CTTAAG 1 cut(s) 761
AflIII ACRYGT 1 cut(s) 1029
AgsI TTSAA 5 cut(s) 943, 961, 2011, 2614, 2914
AhdI GACNNNNNGTC 1 cut(s) 1033
AhlI ACTAGT 2 cut(s) 1948, 2393
AjiI CACGTC 1 cut(s) 1032
AjnI CCWGG 5 cut(s) 1079, 1782, 1927, 2212, 2528
AjuI GAANNNNNNNTTGG 2 cut(s) 2396, 2428
AluBI AGCT 9 cut(s) 760, 1061, 1123, 1191, 2120, 2462, 2568, 2605, 2810
AluI AGCT 9 cut(s) 760, 1061, 1123, 1191, 2120, 2462, 2568, 2605, 2810
Alw21I GWGCWC 4 cut(s) 1572, 1792, 2570, 2812
Alw44I GTGCAC 1 cut(s) 1568
AlwI GGATC 4 cut(s) 239, 360, 1339, 1684
AlwNI CAGNNNCTG 2 cut(s) 841, 1540
Aor13HI TCCGGA 1 cut(s) 388
Aor51HI AGCGCT 1 cut(s) 182
ApaLI GTGCAC 1 cut(s) 1568
ApeKI GCWGC 3 cut(s) 336, 437, 1760
ApoI RAATTY 2 cut(s) 517, 2424
ArsI GACNNNNNNTTYG 2 cut(s) 502, 534
Asp700I GAANNNNTTC 1 cut(s) 2451
AspA2I CCTAGG 1 cut(s) 2885
AspLEI GCGC 8 cut(s) 183, 315, 317, 437, 1159, 1539, 2130, 2826
AspS9I GGNCC 8 cut(s) 210, 286, 304, 402, 774, 817, 1047, 1524
AsuC2I CCSGG 5 cut(s) 13, 302, 329, 619, 778
AsuHPI GGTGA 6 cut(s) 736, 1232, 1261, 1283, 2234, 2551
AsuII TTCGAA 1 cut(s) 905
AvaII GGWCC 3 cut(s) 402, 774, 1524
AvrII CCTAGG 1 cut(s) 2885
AxyI CCTNAGG 1 cut(s) 2442
BaeGI GKGCMC 2 cut(s) 1572, 2867
BalI TGGCCA 1 cut(s) 1782
BanI GGYRCC 1 cut(s) 2864
BanII GRGCYC 5 cut(s) 243, 2570, 2581, 2626, 2812
BauI CACGAG 2 cut(s) 1968, 2481
BbsI GAAGAC 2 cut(s) 30, 36
Bbv12I GWGCWC 4 cut(s) 1572, 1792, 2570, 2812
BbvCI CCTCAGC 1 cut(s) 290
BbvI GCAGC 3 cut(s) 323, 424, 1747
BceAI ACGGC 8 cut(s) 122, 368, 430, 448, 598, 643, 1143, 2186
BciT130I CCWGG 5 cut(s) 1081, 1784, 1929, 2214, 2530
BcnI CCSGG 5 cut(s) 13, 302, 329, 619, 778
BcuI ACTAGT 2 cut(s) 1948, 2393
BfmI CTRYAG 3 cut(s) 1871, 1959, 2292
BfoI RGCGCY 3 cut(s) 184, 438, 1540
BfrI CTTAAG 1 cut(s) 761
BfuAI ACCTGC 1 cut(s) 1237
BglI GCCNNNNNGGC 2 cut(s) 294, 607
BlnI CCTAGG 1 cut(s) 2885
BmcAI AGTACT 2 cut(s) 985, 1947
Bme18I GGWCC 3 cut(s) 402, 774, 1524
BmeRI GACNNNNNGTC 1 cut(s) 1033
BmgBI CACGTC 1 cut(s) 1032
BmgT120I GGNCC 8 cut(s) 210, 286, 304, 402, 774, 817, 1047, 1524
BmiI GGNNCC 7 cut(s) 211, 483, 489, 775, 1048, 1801, 2866
BmrI ACTGGG 1 cut(s) 1002
BmuI ACTGGG 1 cut(s) 1002
BpiI GAAGAC 2 cut(s) 30, 36
BplI GAGNNNNNCTC 2 cut(s) 230, 262
Bpu10I CCTNAGC 4 cut(s) 290, 1689, 2580, 2625
Bpu14I TTCGAA 1 cut(s) 905
BpuMI CCSGG 5 cut(s) 13, 302, 329, 619, 778
BsaBI GATNNNNATC 2 cut(s) 2247, 2353
BsaHI GRCGYC 5 cut(s) 123, 225, 344, 417, 1400
BsaI GGTCTC 5 cut(s) 491, 497, 503, 1250, 2788
BsaWI WCCGGW 2 cut(s) 388, 399
BsaXI ACNNNNNCTCC 2 cut(s) 258, 288
Bsc4I CCNNNNNNNGG 9 cut(s) 208, 283, 617, 1809, 2208, 2219, 2381, 2531, 2886
Bse118I RCCGGY 4 cut(s) 630, 878, 1217, 1818
Bse1I ACTGG 4 cut(s) 997, 1639, 1915, 1918
Bse21I CCTNAGG 1 cut(s) 2442
Bse3DI GCAATG 1 cut(s) 2509
Bse8I GATNNNNATC 2 cut(s) 2247, 2353
BseAI TCCGGA 1 cut(s) 388
BseBI CCWGG 5 cut(s) 1081, 1784, 1929, 2214, 2530
BseGI GGATG 9 cut(s) 440, 753, 1077, 1201, 1635, 2302, 2344, 2399, 2839
BseJI GATNNNNATC 2 cut(s) 2247, 2353
BseLI CCNNNNNNNGG 9 cut(s) 208, 283, 617, 1809, 2208, 2219, 2381, 2531, 2886
BseMI GCAATG 1 cut(s) 2509
BseMII CTCAG 6 cut(s) 304, 1547, 2055, 2433, 2594, 2639
BseNI ACTGG 4 cut(s) 997, 1639, 1915, 1918
BsePI GCGCGC 1 cut(s) 313
BseSI GKGCMC 2 cut(s) 1572, 2867
BseX3I CGGCCG 2 cut(s) 492, 628
BseXI GCAGC 3 cut(s) 323, 424, 1747
Bsh1236I CGCG 4 cut(s) 279, 313, 315, 2128
Bsh1285I CGRYCG 5 cut(s) 58, 259, 495, 631, 2165
BshNI GGYRCC 1 cut(s) 2864
BsiEI CGRYCG 5 cut(s) 58, 259, 495, 631, 2165
BsiHKAI GWGCWC 4 cut(s) 1572, 1792, 2570, 2812
BslFI GGGAC 4 cut(s) 34, 787, 1040, 2247
BslI CCNNNNNNNGG 9 cut(s) 208, 283, 617, 1809, 2208, 2219, 2381, 2531, 2886
BsmBI CGTCTC 7 cut(s) 73, 145, 256, 275, 594, 1357, 2209
BsmFI GGGAC 4 cut(s) 34, 787, 1040, 2247
BsmI GAATGC 2 cut(s) 60, 913
Bso31I GGTCTC 5 cut(s) 491, 497, 503, 1250, 2788
Bsp119I TTCGAA 1 cut(s) 905
Bsp1286I GDGCHC 8 cut(s) 243, 1572, 1792, 2570, 2581, 2626, 2812, 2867
Bsp13I TCCGGA 1 cut(s) 388
Bsp1407I TGTACA 2 cut(s) 1134, 2788
Bsp19I CCATGG 2 cut(s) 792, 2380
BspCNI CTCAG 6 cut(s) 303, 1546, 2054, 2434, 2593, 2638
BspEI TCCGGA 1 cut(s) 388
BspFNI CGCG 4 cut(s) 279, 313, 315, 2128
BspLI GGNNCC 7 cut(s) 211, 483, 489, 775, 1048, 1801, 2866
BspMAI CTGCAG 2 cut(s) 1875, 1963
BspMI ACCTGC 1 cut(s) 1237
BspPI GGATC 4 cut(s) 239, 360, 1339, 1684
BspT104I TTCGAA 1 cut(s) 905
BspT107I GGYRCC 1 cut(s) 2864
BspTI CTTAAG 1 cut(s) 761
BspTNI GGTCTC 5 cut(s) 491, 497, 503, 1250, 2788
BsrBI CCGCTC 1 cut(s) 570
BsrDI GCAATG 1 cut(s) 2509
BsrFI RCCGGY 4 cut(s) 630, 878, 1217, 1818
BsrGI TGTACA 2 cut(s) 1134, 2788
BsrI ACTGG 4 cut(s) 997, 1639, 1915, 1918
BssAI RCCGGY 4 cut(s) 630, 878, 1217, 1818
BssHII GCGCGC 1 cut(s) 313
BssNI GRCGYC 5 cut(s) 123, 225, 344, 417, 1400
BssSI CACGAG 2 cut(s) 1968, 2481
BssT1I CCWWGG 5 cut(s) 792, 1489, 2380, 2586, 2885
Bst2BI CACGAG 2 cut(s) 1968, 2481
Bst2UI CCWGG 5 cut(s) 1081, 1784, 1929, 2214, 2530
Bst4CI ACNGT 8 cut(s) 588, 988, 1567, 2063, 2155, 2163, 2408, 2669
Bst6I CTCTTC 3 cut(s) 148, 941, 1382
BstACI GRCGYC 5 cut(s) 123, 225, 344, 417, 1400
BstAFI CTTAAG 1 cut(s) 761
BstAUI TGTACA 2 cut(s) 1134, 2788
BstBI TTCGAA 1 cut(s) 905
BstDEI CTNAG 9 cut(s) 290, 1533, 1689, 2041, 2442, 2466, 2571, 2580, 2625
BstDSI CCRYGG 3 cut(s) 792, 1067, 2380
BstEII GGTNACC 1 cut(s) 1271
BstF5I GGATG 9 cut(s) 440, 753, 1077, 1201, 1635, 2302, 2344, 2399, 2839
BstFNI CGCG 4 cut(s) 279, 313, 315, 2128
BstH2I RGCGCY 3 cut(s) 184, 438, 1540
BstHHI GCGC 8 cut(s) 183, 315, 317, 437, 1159, 1539, 2130, 2826
BstMCI CGRYCG 5 cut(s) 58, 259, 495, 631, 2165
BstNI CCWGG 5 cut(s) 1081, 1784, 1929, 2214, 2530
BstPI GGTNACC 1 cut(s) 1271
BstSFI CTRYAG 3 cut(s) 1871, 1959, 2292
BstSLI GKGCMC 2 cut(s) 1572, 2867
BstUI CGCG 4 cut(s) 279, 313, 315, 2128
BstV1I GCAGC 3 cut(s) 323, 424, 1747
BstV2I GAAGAC 2 cut(s) 30, 36
BstX2I RGATCY 2 cut(s) 231, 1331
BstYI RGATCY 2 cut(s) 231, 1331
BstZI CGGCCG 2 cut(s) 492, 628
Bsu36I CCTNAGG 1 cut(s) 2442
BtgI CCRYGG 3 cut(s) 792, 1067, 2380
BtrI CACGTC 1 cut(s) 1032
BtsCI GGATG 9 cut(s) 440, 753, 1077, 1201, 1635, 2302, 2344, 2399, 2839
BtsI GCAGTG 3 cut(s) 424, 1021, 1755
BtsIMutI CAGTG 5 cut(s) 424, 1021, 1710, 1755, 2202
BveI ACCTGC 1 cut(s) 1237
CaiI CAGNNNCTG 2 cut(s) 841, 1540
CfoI GCGC 8 cut(s) 183, 315, 317, 437, 1159, 1539, 2130, 2826
Cfr10I RCCGGY 4 cut(s) 630, 878, 1217, 1818
Cfr13I GGNCC 8 cut(s) 210, 286, 304, 402, 774, 817, 1047, 1524
CseI GACGC 3 cut(s) 131, 333, 406
Csp6I GTAC 8 cut(s) 220, 687, 984, 1135, 1946, 2766, 2789, 2890
CviQI GTAC 8 cut(s) 220, 687, 984, 1135, 1946, 2766, 2789, 2890
DdeI CTNAG 9 cut(s) 290, 1533, 1689, 2041, 2442, 2466, 2571, 2580, 2625
DriI GACNNNNNGTC 1 cut(s) 1033
EaeI YGGCCR 4 cut(s) 492, 628, 1780, 2199
EagI CGGCCG 2 cut(s) 492, 628
Eam1104I CTCTTC 3 cut(s) 148, 941, 1382
Eam1105I GACNNNNNGTC 1 cut(s) 1033
EarI CTCTTC 3 cut(s) 148, 941, 1382
EciI GGCGGA 1 cut(s) 582
Ecl136II GAGCTC 2 cut(s) 2568, 2810
EclXI CGGCCG 2 cut(s) 492, 628
Eco130I CCWWGG 5 cut(s) 792, 1489, 2380, 2586, 2885
Eco147I AGGCCT 2 cut(s) 2585, 2630
Eco24I GRGCYC 5 cut(s) 243, 2570, 2581, 2626, 2812
Eco31I GGTCTC 5 cut(s) 491, 497, 503, 1250, 2788
Eco47I GGWCC 3 cut(s) 402, 774, 1524
Eco47III AGCGCT 1 cut(s) 182
Eco52I CGGCCG 2 cut(s) 492, 628
Eco53kI GAGCTC 2 cut(s) 2568, 2810
Eco57I CTGAAG 1 cut(s) 1320
Eco81I CCTNAGG 1 cut(s) 2442
Eco91I GGTNACC 1 cut(s) 1271
EcoICRI GAGCTC 2 cut(s) 2568, 2810
EcoO109I RGGNCCY 1 cut(s) 210
EcoO65I GGTNACC 1 cut(s) 1271
EcoRII CCWGG 5 cut(s) 1079, 1782, 1927, 2212, 2528
EcoT14I CCWWGG 5 cut(s) 792, 1489, 2380, 2586, 2885
EcoT22I ATGCAT 1 cut(s) 1746
EcoT38I GRGCYC 5 cut(s) 243, 2570, 2581, 2626, 2812
ErhI CCWWGG 5 cut(s) 792, 1489, 2380, 2586, 2885
Esp3I CGTCTC 7 cut(s) 73, 145, 256, 275, 594, 1357, 2209
FalI AAGNNNNNCTT 2 cut(s) 1175, 1207
FaqI GGGAC 4 cut(s) 34, 787, 1040, 2247
FauI CCCGC 4 cut(s) 182, 250, 388, 920
FokI GGATG 9 cut(s) 427, 760, 1084, 1208, 1622, 2289, 2351, 2386, 2826
FriOI GRGCYC 5 cut(s) 243, 2570, 2581, 2626, 2812
FspAI RTGCGCAY 1 cut(s) 2825
FspI TGCGCA 1 cut(s) 2825
GlaI GCGC 8 cut(s) 182, 314, 316, 436, 1158, 1538, 2129, 2825
HaeII RGCGCY 3 cut(s) 184, 438, 1540
HgaI GACGC 3 cut(s) 131, 333, 406
HhaI GCGC 8 cut(s) 183, 315, 317, 437, 1159, 1539, 2130, 2826
Hin1I GRCGYC 5 cut(s) 123, 225, 344, 417, 1400
Hin6I GCGC 8 cut(s) 181, 313, 315, 435, 1157, 1537, 2128, 2824
HinP1I GCGC 8 cut(s) 181, 313, 315, 435, 1157, 1537, 2128, 2824
HincII GTYRAC 1 cut(s) 789
HindII GTYRAC 1 cut(s) 789
HindIII AAGCTT 1 cut(s) 758
HphI GGTGA 6 cut(s) 736, 1232, 1261, 1283, 2234, 2551
Hpy166II GTNNAC 7 cut(s) 687, 789, 1135, 1570, 2002, 2345, 2892
Hpy8I GTNNAC 7 cut(s) 687, 789, 1135, 1570, 2002, 2345, 2892
HpyAV CCTTC 5 cut(s) 706, 1002, 1036, 1261, 2891
HpyCH4III ACNGT 8 cut(s) 588, 988, 1567, 2063, 2155, 2163, 2408, 2669
HpyCH4IV ACGT 5 cut(s) 225, 268, 1031, 1400, 2435
HpyF3I CTNAG 9 cut(s) 290, 1533, 1689, 2041, 2442, 2466, 2571, 2580, 2625
HpySE526I ACGT 5 cut(s) 225, 268, 1031, 1400, 2435
Hsp92I GRCGYC 5 cut(s) 123, 225, 344, 417, 1400
HspAI GCGC 8 cut(s) 181, 313, 315, 435, 1157, 1537, 2128, 2824
Kpn2I TCCGGA 1 cut(s) 388
KroI GCCGGC 2 cut(s) 630, 878
KroNI GCCGGC 2 cut(s) 632, 880
LmnI GCTCC 6 cut(s) 101, 487, 493, 1011, 1120, 1704
Lsp1109I GCAGC 3 cut(s) 323, 424, 1747
MaeII ACGT 5 cut(s) 225, 268, 1031, 1400, 2435
MbiI CCGCTC 1 cut(s) 570
MflI RGATCY 2 cut(s) 231, 1331
MhlI GDGCHC 8 cut(s) 243, 1572, 1792, 2570, 2581, 2626, 2812, 2867
MlsI TGGCCA 1 cut(s) 1782
MluNI TGGCCA 1 cut(s) 1782
MlyI GAGTC 4 cut(s) 56, 877, 1980, 2842
MmeI TCCRAC 7 cut(s) 135, 279, 330, 1017, 1391, 1777, 2427
Mox20I TGGCCA 1 cut(s) 1782
Mph1103I ATGCAT 1 cut(s) 1746
MroI TCCGGA 1 cut(s) 388
MroNI GCCGGC 2 cut(s) 630, 878
MroXI GAANNNNTTC 1 cut(s) 2451
MscI TGGCCA 1 cut(s) 1782
MseI TTAA 5 cut(s) 762, 1182, 1644, 2598, 2681
MslI CAYNNNNRTG 1 cut(s) 1500
Msp20I TGGCCA 1 cut(s) 1782
MspA1I CMGCKG 2 cut(s) 294, 2552
MspCI CTTAAG 1 cut(s) 761
Mva1269I GAATGC 2 cut(s) 60, 913
MvaI CCWGG 5 cut(s) 1081, 1784, 1929, 2214, 2530
MvnI CGCG 4 cut(s) 279, 313, 315, 2128
NaeI GCCGGC 2 cut(s) 632, 880
NciI CCSGG 5 cut(s) 13, 302, 329, 619, 778
NcoI CCATGG 2 cut(s) 792, 2380
NgoMIV GCCGGC 2 cut(s) 630, 878
NlaIV GGNNCC 7 cut(s) 211, 483, 489, 775, 1048, 1801, 2866
NmeAIII GCCGAG 2 cut(s) 320, 520
NmuCI GTSAC 5 cut(s) 869, 988, 1271, 1753, 2183
NsbI TGCGCA 1 cut(s) 2825
NsiI ATGCAT 1 cut(s) 1746
NspV TTCGAA 1 cut(s) 905
PaqCI CACCTGC 1 cut(s) 1237
PauI GCGCGC 1 cut(s) 313
PceI AGGCCT 2 cut(s) 2585, 2630
PcsI WCGNNNNNNNCGW 2 cut(s) 51, 2479
PctI GAATGC 2 cut(s) 60, 913
PdiI GCCGGC 2 cut(s) 632, 880
PdmI GAANNNNTTC 1 cut(s) 2451
PflFI GACNNNGTC 1 cut(s) 416
PfoI TCCNGGA 1 cut(s) 617
Ple19I CGATCG 1 cut(s) 58
PleI GAGTC 4 cut(s) 55, 876, 1979, 2842
PpsI GAGTC 4 cut(s) 55, 876, 1979, 2842
Psp124BI GAGCTC 2 cut(s) 2570, 2812
Psp6I CCWGG 5 cut(s) 1079, 1782, 1927, 2212, 2528
PspEI GGTNACC 1 cut(s) 1271
PspGI CCWGG 5 cut(s) 1079, 1782, 1927, 2212, 2528
PspN4I GGNNCC 7 cut(s) 211, 483, 489, 775, 1048, 1801, 2866
PspPI GGNCC 8 cut(s) 210, 286, 304, 402, 774, 817, 1047, 1524
PstI CTGCAG 2 cut(s) 1875, 1963
PstNI CAGNNNCTG 2 cut(s) 841, 1540
PsuI RGATCY 2 cut(s) 231, 1331
PsyI GACNNNGTC 1 cut(s) 416
PteI GCGCGC 1 cut(s) 313
PvuI CGATCG 1 cut(s) 58
RsaI GTAC 8 cut(s) 221, 688, 985, 1136, 1947, 2767, 2790, 2891
RsaNI GTAC 8 cut(s) 220, 687, 984, 1135, 1946, 2766, 2789, 2890
RseI CAYNNNNRTG 1 cut(s) 1500
SacI GAGCTC 2 cut(s) 2570, 2812
SaqAI TTAA 5 cut(s) 762, 1182, 1644, 2598, 2681
Sau96I GGNCC 8 cut(s) 210, 286, 304, 402, 774, 817, 1047, 1524
ScaI AGTACT 2 cut(s) 985, 1947
SchI GAGTC 4 cut(s) 56, 877, 1980, 2842
SduI GDGCHC 8 cut(s) 243, 1572, 1792, 2570, 2581, 2626, 2812, 2867
SfcI CTRYAG 3 cut(s) 1871, 1959, 2292
SfuI TTCGAA 1 cut(s) 905
SinI GGWCC 3 cut(s) 402, 774, 1524
SmiMI CAYNNNNRTG 1 cut(s) 1500
SmlI CTYRAG 1 cut(s) 761
SmoI CTYRAG 1 cut(s) 761
SpeI ACTAGT 2 cut(s) 1948, 2393
SseBI AGGCCT 2 cut(s) 2585, 2630
SstI GAGCTC 2 cut(s) 2570, 2812
StuI AGGCCT 2 cut(s) 2585, 2630
StyI CCWWGG 5 cut(s) 792, 1489, 2380, 2586, 2885
TaaI ACNGT 8 cut(s) 588, 988, 1567, 2063, 2155, 2163, 2408, 2669
TaiI ACGT 5 cut(s) 228, 271, 1034, 1403, 2438
TaqI TCGA 4 cut(s) 54, 420, 905, 1983
TaqII GACCGA 3 cut(s) 515, 521, 1274
TatI WGTACW 6 cut(s) 686, 983, 1134, 1945, 2765, 2788
Tru1I TTAA 5 cut(s) 762, 1182, 1644, 2598, 2681
Tru9I TTAA 5 cut(s) 762, 1182, 1644, 2598, 2681
TscAI CASTG 5 cut(s) 431, 1021, 1717, 1762, 2202
TseFI GTSAC 5 cut(s) 869, 988, 1271, 1753, 2183
TseI GCWGC 3 cut(s) 336, 437, 1760
Tsp45I GTSAC 5 cut(s) 869, 988, 1271, 1753, 2183
TspDTI ATGAA 6 cut(s) 1226, 1473, 1657, 2130, 2168, 2217
TspGWI ACGGA 3 cut(s) 238, 1084, 1339
TspRI CASTG 5 cut(s) 431, 1021, 1717, 1762, 2202
Tth111I GACNNNGTC 1 cut(s) 416
Vha464I CTTAAG 1 cut(s) 761
VneI GTGCAC 1 cut(s) 1568
VpaK11BI GGWCC 3 cut(s) 402, 774, 1524
XapI RAATTY 2 cut(s) 517, 2424
XmaJI CCTAGG 1 cut(s) 2885
XmnI GAANNNNTTC 1 cut(s) 2451
ZraI GACGTC 2 cut(s) 226, 1401
ZrmI AGTACT 2 cut(s) 985, 1947
Zsp2I ATGCAT 1 cut(s) 1746
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.