Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0011080

Physical Location & Seq

Genomic Coordinates Forward (+)

18392390 .. 18392905

Gene Structure 516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g17200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGAGCAGAGCCGGAGAGGAAGAAGACAAAGACAGCGAGTGCTTCTACGAGTCCCTCGATCGCATTGTCTCCTCCTCTTGTTCTTGTTCAACATCGAACTCCGACTCCGAGGCCGACCCCGACCCGAATCCGAATTATGCCGTACCCAAATTCCCAATGGGCGCCACCACCAAGTACGACGTTTGGATCTCCGAGCCTTCCTCCATCTCCGAACGCCGGTCTAAACTCCTCACCGAAATGGGTCTCACCGGCGACCCGGTCCTGACCCGGGCCAAGCCTCAACTGGGTTTTGCCGGTGAGTTCGGGCGGTCGGTCTCGTCGGATTATTTGATCAATGAAGTGAAATCCGACGGTGGTGGCGTTAATAGCATCGTCCGCTCCAAATCCGACGGCAGATCGATCAGTGTAATAACGCTTGTTCTACTTCATCTGTTTCTTCTCCCCCAATTCTTTCGATTCGTTGTGGTTCTGGCGAGGCACAGACCGAGCCTGAACCCGAAACCGGTTCATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0010008 GO:0012505 GO:0016020 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048471 GO:0097708 GO:0098588 GO:0098791 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

172

Amino Acids

18.77

Weight (kDa)

5.63

Isoelectric Point (pI)

63.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15470 AT5G54200
fragaria_vesca	FvH4_3g20610 FvH4_3g20610
malus_domestica	MD03G1223700.v1.1 MD11G1241600.v1.1
prunus_persica	Prupe.4G185800_v2.0.a1 Prupe.4G185800_v2.0.a1
pyrus_communis	pycom03g17200 pycom03g17210 pycom11g21320
rosa_chinensis	RchiOBHm_Chr5g0034631
rosa_laevigata	RLG00000033560
rosa_roxburghii	Rroxscaffold_1G00045690
rosa_rugosa	Rorug05G0147300
rosa_samantha	Rh5AG239300 Rh5BG240000 Rh5CG270400 Rh5DG248200
rosa_wichuraiana	Rw5G021930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	161
AccBSI	CCGCTC	1 cut(s)	378
AciI	CCGC	2 cut(s)	307, 376
AclWI	GGATC	1 cut(s)	194
AcsI	RAATTY	1 cut(s)	149
AcyI	GRCGYC	1 cut(s)	162
AfaI	GTAC	2 cut(s)	144, 176
AfiI	CCNNNNNNNGG	4 cut(s)	216, 268, 284, 502
AgeI	ACCGGT	1 cut(s)	502
AgsI	TTSAA	1 cut(s)	90
AloI	GAACNNNNNNTCC	2 cut(s)	89, 121
Alw26I	GTCTC	3 cut(s)	73, 248, 319
AlwI	GGATC	1 cut(s)	194
Ama87I	CYCGRG	1 cut(s)	267
AoxI	GGCC	2 cut(s)	111, 270
ApoI	RAATTY	1 cut(s)	149
AsiGI	ACCGGT	1 cut(s)	502
AspLEI	GCGC	1 cut(s)	164
AspS9I	GGNCC	2 cut(s)	259, 270
AsuC2I	CCSGG	3 cut(s)	257, 268, 269
AsuHPI	GGTGA	3 cut(s)	223, 238, 308
AvaI	CYCGRG	1 cut(s)	267
AvaII	GGWCC	1 cut(s)	259
BanI	GGYRCC	1 cut(s)	161
BbsI	GAAGAC	1 cut(s)	30
BccI	CCATC	1 cut(s)	212
BceAI	ACGGC	2 cut(s)	125, 406
BclI	TGATCA	1 cut(s)	330
BcnI	CCSGG	3 cut(s)	257, 268, 269
BcoDI	GTCTC	3 cut(s)	73, 248, 319
BfoI	RGCGCY	1 cut(s)	165
Bme1390I	CCNGG	3 cut(s)	257, 268, 269
Bme18I	GGWCC	1 cut(s)	259
BmeT110I	CYCGRG	1 cut(s)	267
BmgT120I	GGNCC	2 cut(s)	259, 270
BmiI	GGNNCC	1 cut(s)	163
BmrFI	CCNGG	3 cut(s)	257, 268, 269
BmrI	ACTGGG	1 cut(s)	293
BmsI	GCATC	1 cut(s)	378
BmuI	ACTGGG	1 cut(s)	293
BpiI	GAAGAC	1 cut(s)	30
BplI	GAGNNNNNCTC	2 cut(s)	185, 217
BpuMI	CCSGG	3 cut(s)	257, 268, 269
Bsa29I	ATCGAT	1 cut(s)	398
BsaHI	GRCGYC	1 cut(s)	162
BsaI	GGTCTC	2 cut(s)	248, 319
BsaJI	CCNNGG	2 cut(s)	108, 267
BsaWI	WCCGGW	1 cut(s)	502
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bsc4I	CCNNNNNNNGG	4 cut(s)	216, 268, 284, 502
Bse118I	RCCGGY	4 cut(s)	216, 248, 293, 502
Bse1I	ACTGG	1 cut(s)	288
BseCI	ATCGAT	1 cut(s)	398
BseDI	CCNNGG	2 cut(s)	108, 267
BseLI	CCNNNNNNNGG	4 cut(s)	216, 268, 284, 502
BseNI	ACTGG	1 cut(s)	288
BseRI	GAGGAG	3 cut(s)	61, 64, 218
Bsh1285I	CGRYCG	2 cut(s)	61, 311
BshFI	GGCC	2 cut(s)	113, 272
BshNI	GGYRCC	1 cut(s)	161
BshTI	ACCGGT	1 cut(s)	502
BshVI	ATCGAT	1 cut(s)	398
BsiEI	CGRYCG	2 cut(s)	61, 311
BsiHKCI	CYCGRG	1 cut(s)	267
BsiSI	CCGG	7 cut(s)	12, 217, 249, 257, 268, 294, 503
BslFI	GGGAC	1 cut(s)	37
BslI	CCNNNNNNNGG	4 cut(s)	216, 268, 284, 502
BsmAI	GTCTC	3 cut(s)	73, 248, 319
BsmFI	GGGAC	1 cut(s)	37
BsnI	GGCC	2 cut(s)	113, 272
Bso31I	GGTCTC	2 cut(s)	248, 319
BsoBI	CYCGRG	1 cut(s)	267
Bsp143I	GATC	5 cut(s)	58, 186, 330, 395, 399
BspACI	CCGC	2 cut(s)	307, 376
BspANI	GGCC	2 cut(s)	113, 272
BspDI	ATCGAT	1 cut(s)	398
BspLI	GGNNCC	1 cut(s)	163
BspPI	GGATC	1 cut(s)	194
BspT107I	GGYRCC	1 cut(s)	161
BspTNI	GGTCTC	2 cut(s)	248, 319
BsrBI	CCGCTC	1 cut(s)	378
BsrFI	RCCGGY	4 cut(s)	216, 248, 293, 502
BsrI	ACTGG	1 cut(s)	288
BssAI	RCCGGY	4 cut(s)	216, 248, 293, 502
BssECI	CCNNGG	2 cut(s)	108, 267
BssMI	GATC	5 cut(s)	58, 186, 330, 395, 399
BssNI	GRCGYC	1 cut(s)	162
Bst4CI	ACNGT	1 cut(s)	353
BstACI	GRCGYC	1 cut(s)	162
BstH2I	RGCGCY	1 cut(s)	165
BstHHI	GCGC	1 cut(s)	164
BstKTI	GATC	5 cut(s)	61, 189, 333, 398, 402
BstMAI	GTCTC	3 cut(s)	73, 248, 319
BstMBI	GATC	5 cut(s)	58, 186, 330, 395, 399
BstMCI	CGRYCG	2 cut(s)	61, 311
BstMWI	GCNNNNNNNGC	2 cut(s)	366, 375
BstSCI	CCNGG	3 cut(s)	255, 266, 267
BstV2I	GAAGAC	1 cut(s)	30
BstX2I	RGATCY	1 cut(s)	186
BstYI	RGATCY	1 cut(s)	186
Bsu15I	ATCGAT	1 cut(s)	398
BsuRI	GGCC	2 cut(s)	113, 272
BsuTUI	ATCGAT	1 cut(s)	398
BtsIMutI	CAGTG	1 cut(s)	409
CfoI	GCGC	1 cut(s)	164
Cfr10I	RCCGGY	4 cut(s)	216, 248, 293, 502
Cfr13I	GGNCC	2 cut(s)	259, 270
Cfr9I	CCCGGG	1 cut(s)	267
ClaI	ATCGAT	1 cut(s)	398
Csp6I	GTAC	2 cut(s)	143, 175
CspAI	ACCGGT	1 cut(s)	502
CviJI	RGCY	6 cut(s)	11, 113, 196, 272, 277, 489
CviKI_1	RGCY	6 cut(s)	11, 113, 196, 272, 277, 489
CviQI	GTAC	2 cut(s)	143, 175
DinI	GGCGCC	1 cut(s)	163
DpnI	GATC	5 cut(s)	60, 188, 332, 397, 401
DpnII	GATC	5 cut(s)	58, 186, 330, 395, 399
Eco31I	GGTCTC	2 cut(s)	248, 319
Eco47I	GGWCC	1 cut(s)	259
Eco88I	CYCGRG	1 cut(s)	267
EgeI	GGCGCC	1 cut(s)	163
EheI	GGCGCC	1 cut(s)	163
FaiI	YATR	1 cut(s)	138
FaqI	GGGAC	1 cut(s)	37
FbaI	TGATCA	1 cut(s)	330
GlaI	GCGC	1 cut(s)	163
HaeII	RGCGCY	1 cut(s)	165
HaeIII	GGCC	2 cut(s)	113, 272
HapII	CCGG	7 cut(s)	12, 217, 249, 257, 268, 294, 503
HhaI	GCGC	1 cut(s)	164
Hin1I	GRCGYC	1 cut(s)	162
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HinfI	GANTC	4 cut(s)	50, 104, 127, 456
HpaII	CCGG	7 cut(s)	12, 217, 249, 257, 268, 294, 503
HphI	GGTGA	3 cut(s)	223, 238, 308
Hpy188I	TCNGA	8 cut(s)	103, 109, 132, 193, 211, 322, 349, 388
Hpy188III	TCNNGA	1 cut(s)	262
Hpy99I	CGWCG	4 cut(s)	182, 322, 353, 392
HpyAV	CCTTC	1 cut(s)	207
HpyCH4III	ACNGT	1 cut(s)	353
HpyCH4IV	ACGT	1 cut(s)	180
HpyF10VI	GCNNNNNNNGC	2 cut(s)	366, 375
HpySE526I	ACGT	1 cut(s)	180
Hsp92I	GRCGYC	1 cut(s)	162
HspAI	GCGC	1 cut(s)	162
KasI	GGCGCC	1 cut(s)	161
Ksp22I	TGATCA	1 cut(s)	330
Kzo9I	GATC	5 cut(s)	58, 186, 330, 395, 399
LmnI	GCTCC	1 cut(s)	383
LweI	GCATC	1 cut(s)	378
MaeII	ACGT	1 cut(s)	180
MalI	GATC	5 cut(s)	60, 188, 332, 397, 401
MbiI	CCGCTC	1 cut(s)	378
MboI	GATC	5 cut(s)	58, 186, 330, 395, 399
MboII	GAAGA	3 cut(s)	32, 35, 428
MflI	RGATCY	1 cut(s)	186
MluCI	AATT	3 cut(s)	133, 149, 446
Mly113I	GGCGCC	1 cut(s)	162
MlyI	GAGTC	2 cut(s)	59, 98
MmeI	TCCRAC	4 cut(s)	126, 300, 372, 411
MnlI	CCTC	9 cut(s)	10, 65, 82, 85, 103, 211, 239, 288, 468
MseI	TTAA	1 cut(s)	363
MslI	CAYNNNNRTG	1 cut(s)	236
MspI	CCGG	7 cut(s)	12, 217, 249, 257, 268, 294, 503
MspR9I	CCNGG	3 cut(s)	257, 268, 269
MwoI	GCNNNNNNNGC	2 cut(s)	366, 375
NarI	GGCGCC	1 cut(s)	162
NciI	CCSGG	3 cut(s)	257, 268, 269
NdeII	GATC	5 cut(s)	58, 186, 330, 395, 399
NlaIV	GGNNCC	1 cut(s)	163
PcsI	WCGNNNNNNNCGW	2 cut(s)	54, 357
PfeI	GAWTC	2 cut(s)	127, 456
PflFI	GACNNNGTC	1 cut(s)	257
PinAI	ACCGGT	1 cut(s)	502
Ple19I	CGATCG	1 cut(s)	61
PleI	GAGTC	2 cut(s)	58, 98
PluTI	GGCGCC	1 cut(s)	165
PpsI	GAGTC	2 cut(s)	58, 98
PspN4I	GGNNCC	1 cut(s)	163
PspPI	GGNCC	2 cut(s)	259, 270
PsuI	RGATCY	1 cut(s)	186
PsyI	GACNNNGTC	1 cut(s)	257
PvuI	CGATCG	1 cut(s)	61
RsaI	GTAC	2 cut(s)	144, 176
RsaNI	GTAC	2 cut(s)	143, 175
RseI	CAYNNNNRTG	1 cut(s)	236
SaqAI	TTAA	1 cut(s)	363
Sau3AI	GATC	5 cut(s)	58, 186, 330, 395, 399
Sau96I	GGNCC	2 cut(s)	259, 270
SchI	GAGTC	2 cut(s)	59, 98
ScrFI	CCNGG	3 cut(s)	257, 268, 269
SetI	ASST	1 cut(s)	183
SfaNI	GCATC	1 cut(s)	378
SfoI	GGCGCC	1 cut(s)	163
SgrAI	CRCCGGYG	1 cut(s)	248
SinI	GGWCC	1 cut(s)	259
SmaI	CCCGGG	1 cut(s)	269
SmiMI	CAYNNNNRTG	1 cut(s)	236
Sse9I	AATT	3 cut(s)	133, 149, 446
SsiI	CCGC	2 cut(s)	307, 376
SspDI	GGCGCC	1 cut(s)	161
StyD4I	CCNGG	3 cut(s)	255, 266, 267
TaaI	ACNGT	1 cut(s)	353
TaiI	ACGT	1 cut(s)	183
TaqI	TCGA	4 cut(s)	57, 95, 398, 454
TaqII	GACCGA	2 cut(s)	301, 499
TasI	AATT	3 cut(s)	133, 149, 446
TfiI	GAWTC	2 cut(s)	127, 456
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TscAI	CASTG	1 cut(s)	409
TspDTI	ATGAA	3 cut(s)	351, 416, 497
TspMI	CCCGGG	1 cut(s)	267
TspRI	CASTG	1 cut(s)	409
Tth111I	GACNNNGTC	1 cut(s)	257
VpaK11BI	GGWCC	1 cut(s)	259
XapI	RAATTY	1 cut(s)	149
XcmI	CCANNNNNNNNNTGG	2 cut(s)	154, 280
XmaI	CCCGGG	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.