Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0011080

Physical Location & Seq

Genomic Coordinates Reverse (-)

13717530 .. 13719056

Gene Structure 1527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0147300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGCCATCCACAAAGGACTGCTGTGAGTTATCTGGTCACTCCCACAATCTAAATCTGAGAAAAAACCCGGCGGTTTCTGATGCAGTACCAGCGCTTCCTTTTGATATCATCACTGAGATTTTGAGCTGGTTGCCTGTAGATTCTTTGCTAAGGTTCAAGTGTGTGTGCAAAAAATGGCGTTCCTTGCTTCTAGACTACAATTTCATTGCAAAACATATGGTTCGGGCAAGACCTCTGCAACTTTCCTATCAAAAAGAATGGGAACCTAACAAATATAATACGATTCTTTATGATGAAAACTTCAAGCATATTTCAGGTGTGGCTGGCTTGCTTCTGGAGGAGAGTCTTACTTCTCGAGTTTTCCGAATCAGAAACTTTGCAACGCATCAAGTACTTTACTTGCCTGATGCACACGAGAAAACTAGATCAGTGGGTTTTGTTTTTGATTCATCCACTGGTGAGTGTAAAGCGGCATGTCTTCATTGGAAACAGGAGGGTGACTCTGGCTATGAAGTAGGCTTTAAAGTTCTAAGTATCGGAAAGGATGATCGATGGAGGACTCTGAAGCTGGCCAAGCAAAATGGCAAACCGTTCGTGGGACGATATTTTACAGCAACTCAGGAAGAAGGGGCCGTTCATGCGGTGGAAATTATTAGAGATGGACAAGATTTCAAGCTAGAAGTTCAATCTCTTGATATATGGAGTGAATGTTTCACCATTACCACTCTGCCCCGGGGAGCTTTCTTAGACTTGAAAAGAGTTGCAATTTTTCGTTGGAATTACTATGTAGCTGTTGCTGATATAGTAGAGGAATCCCTTAACGTCTTGGTGTTGGAAGACTTCAAGGAACACAAATGGAGGAAGATCATTGTTCCCTTGAAATTCTTGAAGGACAATCCAGGTTTAAAAGATGAGATTCGCCCTCATCAAGTTTGGTTAAATGACCTCCAGTTGCACAATGCAGTGAAAAAGTATATTCTCGTGTATGATATGGAAAGGAAGGTGATCAAGGCGACGCATACCAAGTCTACGGAGAAAATATATGAATTCCGAAAGCCAAGCCTGGTTACTCTCAAGGGAATGAAGAATGAATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0010008 GO:0012505 GO:0016020 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048471 GO:0097708 GO:0098588 GO:0098791 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

365

Amino Acids

42.4

Weight (kDa)

8.94

Isoelectric Point (pI)

40.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	31 - 65	5.9e-08	F-box-like
F-box	PF00646	32 - 68	1.3e-10	F-box domain
FBA_3	PF08268	93 - 346	1.4e-12	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15470 AT5G54200
fragaria_vesca	FvH4_3g20610 FvH4_3g20610
malus_domestica	MD03G1223700.v1.1 MD11G1241600.v1.1
prunus_persica	Prupe.4G185800_v2.0.a1 Prupe.4G185800_v2.0.a1
pyrus_communis	pycom03g17200 pycom03g17210 pycom11g21320
rosa_chinensis	RchiOBHm_Chr5g0034631
rosa_laevigata	RLG00000033560
rosa_roxburghii	Rroxscaffold_1G00045690
rosa_rugosa	Rorug05G0147300
rosa_samantha	Rh5AG239300 Rh5BG240000 Rh5CG270400 Rh5DG248200
rosa_wichuraiana	Rw5G021930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1028
AciI	CCGC	3 cut(s)	71, 470, 641
AcoI	YGGCCR	1 cut(s)	570
AcsI	RAATTY	2 cut(s)	881, 1046
AcuI	CTGAAG	1 cut(s)	584
AfaI	GTAC	2 cut(s)	87, 393
AfeI	AGCGCT	1 cut(s)	93
AfiI	CCNNNNNNNGG	1 cut(s)	596
AgsI	TTSAA	8 cut(s)	157, 304, 673, 686, 754, 844, 880, 889
AjnI	CCWGG	2 cut(s)	898, 1062
AluBI	AGCT	5 cut(s)	126, 568, 676, 740, 791
AluI	AGCT	5 cut(s)	126, 568, 676, 740, 791
Ama87I	CYCGRG	2 cut(s)	354, 732
Aor51HI	AGCGCT	1 cut(s)	93
AoxI	GGCC	2 cut(s)	570, 630
ApoI	RAATTY	2 cut(s)	881, 1046
AspLEI	GCGC	1 cut(s)	94
AspS9I	GGNCC	1 cut(s)	630
AsuC2I	CCSGG	3 cut(s)	68, 733, 734
AsuHPI	GGTGA	4 cut(s)	470, 509, 706, 1015
AvaI	CYCGRG	2 cut(s)	354, 732
BalI	TGGCCA	1 cut(s)	572
BarI	GAAGNNNNNNTAC	3 cut(s)	78, 110, 1076
BauI	CACGAG	2 cut(s)	413, 980
BbsI	GAAGAC	2 cut(s)	470, 843
BccI	CCATC	3 cut(s)	13, 546, 653
BceAI	ACGGC	1 cut(s)	617
BcgI	CGANNNNNNTGC	2 cut(s)	574, 608
BciT130I	CCWGG	2 cut(s)	900, 1064
BclI	TGATCA	1 cut(s)	1005
BcnI	CCSGG	3 cut(s)	68, 733, 734
BfaI	CTAG	4 cut(s)	191, 423, 677, 1096
BfmI	CTRYAG	1 cut(s)	135
BfoI	RGCGCY	1 cut(s)	95
BisI	GCNGC	1 cut(s)	471
BlsI	GCNGC	1 cut(s)	472
BmcAI	AGTACT	1 cut(s)	393
Bme1390I	CCNGG	5 cut(s)	68, 733, 734, 900, 1064
BmeT110I	CYCGRG	2 cut(s)	354, 732
BmgT120I	GGNCC	1 cut(s)	630
BmiI	GGNNCC	2 cut(s)	264, 631
BmrFI	CCNGG	5 cut(s)	68, 733, 734, 900, 1064
BmsI	GCATC	3 cut(s)	70, 394, 397
BpiI	GAAGAC	2 cut(s)	470, 843
BplI	GAGNNNNNCTC	2 cut(s)	485, 517
BpmI	CTGGAG	2 cut(s)	356, 932
Bpu10I	CCTNAGC	1 cut(s)	149
BpuEI	CTTGAG	1 cut(s)	1058
BpuMI	CCSGG	3 cut(s)	68, 733, 734
Bsa29I	ATCGAT	1 cut(s)	550
BsaJI	CCNNGG	3 cut(s)	731, 732, 733
BsaXI	ACNNNNNCTCC	2 cut(s)	694, 724
Bsc4I	CCNNNNNNNGG	1 cut(s)	596
Bse1I	ACTGG	2 cut(s)	460, 949
Bse3DI	GCAATG	1 cut(s)	204
BseBI	CCWGG	2 cut(s)	900, 1064
BseCI	ATCGAT	1 cut(s)	550
BseDI	CCNNGG	3 cut(s)	731, 732, 733
BseGI	GGATG	3 cut(s)	5, 449, 550
BseLI	CCNNNNNNNGG	1 cut(s)	596
BseMI	GCAATG	1 cut(s)	204
BseMII	CTCAG	3 cut(s)	47, 105, 632
BseNI	ACTGG	2 cut(s)	460, 949
BseRI	GAGGAG	1 cut(s)	353
BshFI	GGCC	2 cut(s)	572, 632
BshVI	ATCGAT	1 cut(s)	550
BsiHKCI	CYCGRG	2 cut(s)	354, 732
BsiSI	CCGG	2 cut(s)	68, 733
BslFI	GGGAC	1 cut(s)	612
BslI	CCNNNNNNNGG	1 cut(s)	596
BsmFI	GGGAC	1 cut(s)	612
BsnI	GGCC	2 cut(s)	572, 632
BsoBI	CYCGRG	2 cut(s)	354, 732
Bsp143I	GATC	4 cut(s)	425, 547, 864, 1005
BspACI	CCGC	3 cut(s)	71, 470, 641
BspANI	GGCC	2 cut(s)	572, 632
BspCNI	CTCAG	3 cut(s)	48, 106, 631
BspDI	ATCGAT	1 cut(s)	550
BspLI	GGNNCC	2 cut(s)	264, 631
BsrDI	GCAATG	1 cut(s)	204
BsrI	ACTGG	2 cut(s)	460, 949
BssECI	CCNNGG	3 cut(s)	731, 732, 733
BssMI	GATC	4 cut(s)	425, 547, 864, 1005
BssSI	CACGAG	2 cut(s)	413, 980
Bst2BI	CACGAG	2 cut(s)	413, 980
Bst2UI	CCWGG	2 cut(s)	900, 1064
Bst4CI	ACNGT	1 cut(s)	591
BstC8I	GCNNGC	3 cut(s)	325, 329, 570
BstDEI	CTNAG	6 cut(s)	56, 114, 149, 530, 618, 745
BstF5I	GGATG	3 cut(s)	5, 449, 550
BstH2I	RGCGCY	1 cut(s)	95
BstHHI	GCGC	1 cut(s)	94
BstKTI	GATC	4 cut(s)	428, 550, 867, 1008
BstMBI	GATC	4 cut(s)	425, 547, 864, 1005
BstMWI	GCNNNNNNNGC	4 cut(s)	89, 184, 574, 638
BstNI	CCWGG	2 cut(s)	900, 1064
BstNSI	RCATGY	1 cut(s)	477
BstSCI	CCNGG	5 cut(s)	66, 731, 732, 898, 1062
BstSFI	CTRYAG	1 cut(s)	135
BstV2I	GAAGAC	2 cut(s)	470, 843
Bsu15I	ATCGAT	1 cut(s)	550
BsuRI	GGCC	2 cut(s)	572, 632
BsuTUI	ATCGAT	1 cut(s)	550
BtsCI	GGATG	3 cut(s)	5, 449, 550
BtsI	GCAGTG	1 cut(s)	969
BtsIMutI	CAGTG	4 cut(s)	111, 435, 453, 969
Cac8I	GCNNGC	3 cut(s)	325, 329, 570
CfoI	GCGC	1 cut(s)	94
Cfr13I	GGNCC	1 cut(s)	630
Cfr9I	CCCGGG	1 cut(s)	732
ClaI	ATCGAT	1 cut(s)	550
CseI	GACGC	1 cut(s)	1024
Csp6I	GTAC	2 cut(s)	86, 392
CviAII	CATG	2 cut(s)	474, 638
CviQI	GTAC	2 cut(s)	86, 392
DdeI	CTNAG	6 cut(s)	56, 114, 149, 530, 618, 745
DpnI	GATC	4 cut(s)	427, 549, 866, 1007
DpnII	GATC	4 cut(s)	425, 547, 864, 1005
DraI	TTTAAA	2 cut(s)	523, 906
EaeI	YGGCCR	1 cut(s)	570
Eco32I	GATATC	1 cut(s)	106
Eco47III	AGCGCT	1 cut(s)	93
Eco57I	CTGAAG	1 cut(s)	584
Eco88I	CYCGRG	2 cut(s)	354, 732
EcoRI	GAATTC	1 cut(s)	1046
EcoRII	CCWGG	2 cut(s)	898, 1062
EcoRV	GATATC	1 cut(s)	106
FaeI	CATG	2 cut(s)	477, 641
FaqI	GGGAC	1 cut(s)	612
FatI	CATG	2 cut(s)	473, 637
FauNDI	CATATG	1 cut(s)	216
FbaI	TGATCA	1 cut(s)	1005
FblI	GTMKAC	1 cut(s)	1028
Fnu4HI	GCNGC	1 cut(s)	471
FokI	GGATG	2 cut(s)	436, 557
Fsp4HI	GCNGC	1 cut(s)	471
FspBI	CTAG	4 cut(s)	191, 423, 677, 1096
GlaI	GCGC	1 cut(s)	93
GluI	GCNGC	1 cut(s)	471
GsuI	CTGGAG	2 cut(s)	356, 932
HaeII	RGCGCY	1 cut(s)	95
HaeIII	GGCC	2 cut(s)	572, 632
HapII	CCGG	2 cut(s)	68, 733
HgaI	GACGC	1 cut(s)	1024
HhaI	GCGC	1 cut(s)	94
Hin1II	CATG	2 cut(s)	477, 641
Hin6I	GCGC	1 cut(s)	92
HinP1I	GCGC	1 cut(s)	92
HinfI	GANTC	9 cut(s)	140, 283, 343, 366, 446, 500, 559, 812, 916
HpaII	CCGG	2 cut(s)	68, 733
HphI	GGTGA	4 cut(s)	470, 509, 706, 1015
Hpy166II	GTNNAC	1 cut(s)	1029
Hpy188I	TCNGA	7 cut(s)	57, 79, 365, 371, 539, 564, 1052
Hpy188III	TCNNGA	6 cut(s)	191, 335, 354, 620, 692, 886
Hpy8I	GTNNAC	1 cut(s)	1029
Hpy99I	CGWCG	1 cut(s)	1018
HpyAV	CCTTC	3 cut(s)	620, 883, 994
HpyCH4III	ACNGT	1 cut(s)	591
HpyCH4IV	ACGT	1 cut(s)	822
HpyCH4V	TGCA	9 cut(s)	83, 168, 209, 238, 380, 410, 764, 955, 962
HpyF10VI	GCNNNNNNNGC	4 cut(s)	89, 184, 574, 638
HpyF3I	CTNAG	6 cut(s)	56, 114, 149, 530, 618, 745
HpySE526I	ACGT	1 cut(s)	822
Hsp92II	CATG	2 cut(s)	477, 641
HspAI	GCGC	1 cut(s)	92
Ksp22I	TGATCA	1 cut(s)	1005
Kzo9I	GATC	4 cut(s)	425, 547, 864, 1005
LmnI	GCTCC	1 cut(s)	737
LweI	GCATC	3 cut(s)	70, 394, 397
MaeI	CTAG	4 cut(s)	191, 423, 677, 1096
MaeII	ACGT	1 cut(s)	822
MaeIII	GTNAC	3 cut(s)	35, 497, 1066
MalI	GATC	4 cut(s)	427, 549, 866, 1007
MboI	GATC	4 cut(s)	425, 547, 864, 1005
MboII	GAAGA	5 cut(s)	470, 635, 848, 874, 1096
MlsI	TGGCCA	1 cut(s)	572
MluCI	AATT	6 cut(s)	199, 648, 765, 778, 881, 1046
MluNI	TGGCCA	1 cut(s)	572
MlyI	GAGTC	3 cut(s)	352, 494, 553
MmeI	TCCRAC	2 cut(s)	755, 813
MnlI	CCTC	8 cut(s)	243, 331, 487, 549, 802, 852, 933, 956
Mox20I	TGGCCA	1 cut(s)	572
MscI	TGGCCA	1 cut(s)	572
MseI	TTAA	4 cut(s)	522, 819, 905, 938
Msp20I	TGGCCA	1 cut(s)	572
MspI	CCGG	2 cut(s)	68, 733
MspR9I	CCNGG	5 cut(s)	68, 733, 734, 900, 1064
MvaI	CCWGG	2 cut(s)	900, 1064
MwoI	GCNNNNNNNGC	4 cut(s)	89, 184, 574, 638
NciI	CCSGG	3 cut(s)	68, 733, 734
NdeI	CATATG	1 cut(s)	216
NdeII	GATC	4 cut(s)	425, 547, 864, 1005
NlaIII	CATG	2 cut(s)	477, 641
NlaIV	GGNNCC	2 cut(s)	264, 631
NmuCI	GTSAC	2 cut(s)	35, 497
NspI	RCATGY	1 cut(s)	477
PaeR7I	CTCGAG	1 cut(s)	354
PcsI	WCGNNNNNNNCGW	1 cut(s)	361
PfeI	GAWTC	6 cut(s)	140, 283, 366, 446, 812, 916
PkrI	GCNGC	1 cut(s)	472
PleI	GAGTC	3 cut(s)	351, 494, 553
PpsI	GAGTC	3 cut(s)	351, 494, 553
Psp6I	CCWGG	2 cut(s)	898, 1062
PspGI	CCWGG	2 cut(s)	898, 1062
PspN4I	GGNNCC	2 cut(s)	264, 631
PspPI	GGNCC	1 cut(s)	630
RsaI	GTAC	2 cut(s)	87, 393
RsaNI	GTAC	2 cut(s)	86, 392
SaqAI	TTAA	4 cut(s)	522, 819, 905, 938
SatI	GCNGC	1 cut(s)	471
Sau3AI	GATC	4 cut(s)	425, 547, 864, 1005
Sau96I	GGNCC	1 cut(s)	630
ScaI	AGTACT	1 cut(s)	393
SchI	GAGTC	3 cut(s)	352, 494, 553
ScrFI	CCNGG	5 cut(s)	68, 733, 734, 900, 1064
SfaNI	GCATC	3 cut(s)	70, 394, 397
SfcI	CTRYAG	1 cut(s)	135
Sfr274I	CTCGAG	1 cut(s)	354
SlaI	CTCGAG	1 cut(s)	354
SmaI	CCCGGG	1 cut(s)	734
SmlI	CTYRAG	2 cut(s)	354, 1073
SmoI	CTYRAG	2 cut(s)	354, 1073
Sse9I	AATT	6 cut(s)	199, 648, 765, 778, 881, 1046
SsiI	CCGC	3 cut(s)	71, 470, 641
SspMI	CTAG	4 cut(s)	191, 423, 677, 1096
StyD4I	CCNGG	5 cut(s)	66, 731, 732, 898, 1062
TaaI	ACNGT	1 cut(s)	591
TaiI	ACGT	1 cut(s)	825
TaqI	TCGA	2 cut(s)	355, 550
TasI	AATT	6 cut(s)	199, 648, 765, 778, 881, 1046
TatI	WGTACW	1 cut(s)	391
TauI	GCSGC	1 cut(s)	473
TfiI	GAWTC	6 cut(s)	140, 283, 366, 446, 812, 916
Tru1I	TTAA	4 cut(s)	522, 819, 905, 938
Tru9I	TTAA	4 cut(s)	522, 819, 905, 938
TscAI	CASTG	4 cut(s)	118, 435, 460, 969
TseFI	GTSAC	2 cut(s)	35, 497
Tsp45I	GTSAC	2 cut(s)	35, 497
TspDTI	ATGAA	8 cut(s)	193, 309, 438, 470, 525, 626, 1059, 1097
TspGWI	ACGGA	1 cut(s)	1046
TspMI	CCCGGG	1 cut(s)	732
TspRI	CASTG	4 cut(s)	118, 435, 460, 969
XapI	RAATTY	2 cut(s)	881, 1046
XbaI	TCTAGA	1 cut(s)	190
XceI	RCATGY	1 cut(s)	477
XhoI	CTCGAG	1 cut(s)	354
XmaI	CCCGGG	1 cut(s)	732
XmiI	GTMKAC	1 cut(s)	1028
XspI	CTAG	4 cut(s)	191, 423, 677, 1096
ZrmI	AGTACT	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.