AT3G16610

repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011260
Physical Location & Seq
Reverse (-)
5656215 .. 5658335
2121 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G16610.1

Sequence Viewer

Length: 1965 bp
ATGTTTCTAAGTCTTCTTGAAACCTGTATTCGCTCAAGGAATCTGGTCTTAGGTCAGGTCATTCATCAGCATCTTCTTAAACGCTCTCTTACGTTAAGTTCCTCTACAGTGCTCGTCAATTTAACACGTCTTTACGCATCATGCAATGAAGTGGAACTTGCACGCCATGTGTTCGATGAAATTCCTCATCCAAGGATCAATCCTATTGCTTGGGATTTGATGATCAGAGCCTATGCTTCGAATGATTTCGCGGAAAAAGCTTTGGATTTGTACTACAAGATGCTGAATTCTGGTGTTAGACCCACGAAATATACGTACCCGTTTGTTTTGAAAGCATGTGCTGGTCTTCGAGCAATTGACGATGGTAAGCTGATACATAGTCATGTGAATTGTAGCGACTTTGCAACTGATATGTATGTATGTACTGCTCTGGTTGATTTCTATGCTAAGTGTGGGGAACTTGAGATGGCTATAAAGGTGTTCGACGAAATGCCTAAGAGAGATATGGTTGCTTGGAATGCTATGATTTCTGGGTTTTCTTTACATTGCTGTTTAACTGATGTCATTGGATTGTTTTTGGATATGCGTAGAATCGATGGTCTGAGTCCTAATCTATCCACCATCGTTGGGATGTTTCCTGCACTAGGAAGGGCTGGTGCATTGAGGGAAGGGAAAGCTGTTCATGGGTATTGCACAAGAATGGGTTTTAGCAATGATTTAGTTGTTAAGACTGGGATCTTGGATGTATATGCCAAGAGCAAGTGCATTATCTATGCGAGAAGAGTTTTCGATTTAGACTTTAAGAAGAATGAGGTAACCTGGAGTGCTATGATTGGAGGCTACGTAGAAAACGAAATGATAAAGGAAGCTGGAGAAGTGTTTTTTCAGATGTTGGTTAATGATAATGTGGCAATGGTGACGCCAGTTGCCATTGGGCTTATTCTGATGGGTTGTGCAAGGTTTGGAGATCTAAGTGGAGGGCGATGTGTACATTGTTACGCGGTTAAAGCAGGCTTCATCTTAGACTTAACTGTTCAAAACACCATAATTTCATTTTATGCTAAGTATGGAAGCTTATGTGATGCTTTTAGGCAGTTTAGTGAGATTGGCTTGAAAGATGTTATTTCATATAATTCTCTCATCACTGGGTGTGTAGTGAACTGTCGCCCAGAAGAGAGTTTTCGTCTATTTCATGAGATGAGAACATCTGGAATTCGTCCTGATATTACAACATTGCTTGGTGTCTTAACCGCTTGCTCTCACTTGGCTGCTTTGGGACACGGTTCTAGTTGCCACGGGTATTGTGTTGTTCATGGCTATGCAGTTAACACAAGCATTTGTAATGCACTGATGGATATGTACACAAAGTGTGGAAAACTTGATGTAGCCAAGAGAGTTTTCGACACAATGCATAAGCGGGATATAGTTTCGTGGAACACAATGCTGTTCGGATTCGGAATTCATGGTCTTGGCAAAGAAGCTCTTTCTCTGTTCAACAGTATGCAGGAAACAGGTGTGAACCCAGACGAGGTGACTCTTCTTGCTATTTTGTCTGCTTGTAGCCATTCAGGACTAGTGGATGAAGGGAAACAACTGTTCAACTCCATGTCTCGAGGAGATTTCAACGTCATCCCAAGAATAGACCATTACAATTGCATGACTGATCTTCTAGCCCGTGCCGGATACTTGGATGAAGCTTATGATTTTGTAAACAAGATGCCATTTGAGCCCGATATTCGCGTGTTGGGTACACTTCTCTCTGCTTGTTGGACGTACAAGAATGCGGAACTTGGGAATGAAGTGTCGAAAAAGATGCAGAGTCTTGGTGAAACAACAGAAAGCTTAGTTCTTCTATCCAACACCTACTCAGCTGCTGAGAGATGGGAAGATGCAGCTAGAATTAGAATGATACAGAAGAAAAGAGGGCTTCTCAAGACTCCGGGTTATAGCTGGGTCGATGTTTGA

Protein Analysis

654

Amino Acids

72.84

Weight (kDa)

6.8

Isoelectric Point (pI)

36.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 69 - 114 1.1e-07 PPR repeat family
PPR_2 PF13041 372 - 420 3.4e-10 PPR repeat family
PPR PF01535 375 - 405 8.4e-07 PPR repeat
PPR_2 PF13041 473 - 521 8.5e-11 PPR repeat family
PPR PF01535 476 - 506 1.7e-06 PPR repeat
E_motif PF20431 592 - 653 8.2e-11 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 251, 1001, 1740
AciI CCGC 5 cut(s) 251, 1001, 1251, 1417, 1784
AclWI GGATC 2 cut(s) 203, 743
AcsI RAATTY 4 cut(s) 180, 286, 1212, 1458
AcyI GRCGYC 1 cut(s) 920
AdeI CACNNNGTG 2 cut(s) 1149, 1368
AfaI GTAC 7 cut(s) 272, 317, 424, 990, 1361, 1750, 1775
AfiI CCNNNNNNNGG 3 cut(s) 627, 644, 1528
AflIII ACRYGT 1 cut(s) 125
AgsI TTSAA 7 cut(s) 20, 331, 1037, 1114, 1495, 1600, 1624
AhlI ACTAGT 1 cut(s) 1573
AjiI CACGTC 1 cut(s) 128
AjnI CCWGG 1 cut(s) 818
AjuI GAANNNNNNNTTGG 2 cut(s) 1382, 1414
Alw21I GWGCWC 1 cut(s) 114
Alw26I GTCTC 1 cut(s) 1614
AlwI GGATC 2 cut(s) 203, 743
AlwNI CAGNNNCTG 1 cut(s) 1874
Ama87I CYCGRG 1 cut(s) 1611
ApeKI GCWGC 3 cut(s) 1268, 1871, 1892
ApoI RAATTY 4 cut(s) 180, 286, 1212, 1458
Asp700I GAANNNNTTC 1 cut(s) 245
AsuC2I CCSGG 1 cut(s) 1941
AsuHPI GGTGA 3 cut(s) 928, 1543, 1838
AsuII TTCGAA 1 cut(s) 239
AvaI CYCGRG 1 cut(s) 1611
BanII GRGCYC 1 cut(s) 1731
BbsI GAAGAC 2 cut(s) 5, 338
Bbv12I GWGCWC 1 cut(s) 114
BbvI GCAGC 3 cut(s) 1255, 1858, 1904
BccI CCATC 7 cut(s) 356, 460, 590, 629, 940, 1345, 1875
BcgI CGANNNNNNTGC 2 cut(s) 1795, 1829
BciT130I CCWGG 1 cut(s) 820
BciVI GTATCC 1 cut(s) 1676
BclI TGATCA 1 cut(s) 222
BcnI CCSGG 1 cut(s) 1941
BcoDI GTCTC 1 cut(s) 1614
BcuI ACTAGT 1 cut(s) 1573
BfaI CTAG 5 cut(s) 644, 1287, 1574, 1670, 1896
BfmI CTRYAG 1 cut(s) 105
BfuI GTATCC 1 cut(s) 1676
BglII AGATCT 1 cut(s) 967
BisI GCNGC 3 cut(s) 1269, 1872, 1893
BlsI GCNGC 3 cut(s) 1270, 1873, 1894
Bme1390I CCNGG 2 cut(s) 820, 1941
BmeT110I CYCGRG 1 cut(s) 1611
BmgBI CACGTC 1 cut(s) 128
BmrFI CCNGG 2 cut(s) 820, 1941
BmrI ACTGGG 2 cut(s) 741, 1155
BmsI GCATC 7 cut(s) 79, 146, 270, 1072, 1707, 1803, 1879
BmuI ACTGGG 2 cut(s) 741, 1155
BpiI GAAGAC 2 cut(s) 5, 338
BplI GAGNNNNNCTC 2 cut(s) 1914, 1946
BpmI CTGGAG 2 cut(s) 841, 891
Bpu14I TTCGAA 1 cut(s) 239
BpuEI CTTGAG 3 cut(s) 19, 482, 1916
BpuMI CCSGG 1 cut(s) 1941
Bsa29I ATCGAT 1 cut(s) 594
BsaAI YACGTR 2 cut(s) 315, 844
BsaHI GRCGYC 1 cut(s) 920
BsaJI CCNNGG 2 cut(s) 191, 1294
BsaXI ACNNNNNCTCC 2 cut(s) 828, 858
Bsc4I CCNNNNNNNGG 3 cut(s) 627, 644, 1528
Bse1I ACTGG 3 cut(s) 736, 923, 1150
Bse3DI GCAATG 5 cut(s) 151, 544, 718, 918, 1232
BseBI CCWGG 1 cut(s) 820
BseCI ATCGAT 1 cut(s) 594
BseDI CCNNGG 2 cut(s) 191, 1294
BseGI GGATG 6 cut(s) 187, 636, 748, 1585, 1629, 1696
BseLI CCNNNNNNNGG 3 cut(s) 627, 644, 1528
BseMI GCAATG 5 cut(s) 151, 544, 718, 918, 1232
BseMII CTCAG 3 cut(s) 593, 1866, 1881
BseNI ACTGG 3 cut(s) 736, 923, 1150
BseRI GAGGAG 1 cut(s) 1629
BseXI GCAGC 3 cut(s) 1255, 1858, 1904
BseYI CCCAGC 1 cut(s) 1950
BsgI GTGCAG 1 cut(s) 624
Bsh1236I CGCG 3 cut(s) 251, 1001, 1740
BshVI ATCGAT 1 cut(s) 594
BsiHKAI GWGCWC 1 cut(s) 114
BsiHKCI CYCGRG 1 cut(s) 1611
BsiSI CCGG 2 cut(s) 1680, 1940
BslFI GGGAC 1 cut(s) 1290
BslI CCNNNNNNNGG 3 cut(s) 627, 644, 1528
BsmAI GTCTC 1 cut(s) 1614
BsmFI GGGAC 1 cut(s) 1290
BsmI GAATGC 2 cut(s) 523, 1786
BsoBI CYCGRG 1 cut(s) 1611
Bsp119I TTCGAA 1 cut(s) 239
Bsp1286I GDGCHC 2 cut(s) 114, 1731
Bsp1407I TGTACA 2 cut(s) 988, 1359
Bsp143I GATC 5 cut(s) 195, 222, 735, 967, 1663
BspACI CCGC 5 cut(s) 251, 1001, 1251, 1417, 1784
BspCNI CTCAG 3 cut(s) 594, 1867, 1880
BspDI ATCGAT 1 cut(s) 594
BspFNI CGCG 3 cut(s) 251, 1001, 1740
BspHI TCATGA 1 cut(s) 1192
BspPI GGATC 2 cut(s) 203, 743
BspT104I TTCGAA 1 cut(s) 239
BsrDI GCAATG 5 cut(s) 151, 544, 718, 918, 1232
BsrGI TGTACA 2 cut(s) 988, 1359
BsrI ACTGG 3 cut(s) 736, 923, 1150
BssECI CCNNGG 2 cut(s) 191, 1294
BssMI GATC 5 cut(s) 195, 222, 735, 967, 1663
BssNI GRCGYC 1 cut(s) 920
BssT1I CCWWGG 1 cut(s) 191
Bst2UI CCWGG 1 cut(s) 820
Bst4CI ACNGT 6 cut(s) 109, 1033, 1163, 1283, 1499, 1596
Bst6I CTCTTC 3 cut(s) 775, 1167, 1542
BstACI GRCGYC 1 cut(s) 920
BstAUI TGTACA 2 cut(s) 988, 1359
BstBAI YACGTR 2 cut(s) 315, 844
BstBI TTCGAA 1 cut(s) 239
BstC8I GCNNGC 3 cut(s) 163, 1012, 1255
BstDSI CCRYGG 1 cut(s) 1294
BstEII GGTNACC 1 cut(s) 814
BstENI CCTNNNNNAGG 1 cut(s) 642
BstF5I GGATG 6 cut(s) 187, 636, 748, 1585, 1629, 1696
BstFNI CGCG 3 cut(s) 251, 1001, 1740
BstKTI GATC 5 cut(s) 198, 225, 738, 970, 1666
BstMAI GTCTC 1 cut(s) 1614
BstMBI GATC 5 cut(s) 195, 222, 735, 967, 1663
BstMWI GCNNNNNNNGC 4 cut(s) 257, 518, 1007, 1726
BstNI CCWGG 1 cut(s) 820
BstNSI RCATGY 1 cut(s) 339
BstPI GGTNACC 1 cut(s) 814
BstSCI CCNGG 2 cut(s) 818, 1939
BstSFI CTRYAG 1 cut(s) 105
BstSNI TACGTA 2 cut(s) 315, 844
BstUI CGCG 3 cut(s) 251, 1001, 1740
BstV1I GCAGC 3 cut(s) 1255, 1858, 1904
BstV2I GAAGAC 2 cut(s) 5, 338
BstX2I RGATCY 2 cut(s) 735, 967
BstYI RGATCY 2 cut(s) 735, 967
Bsu15I ATCGAT 1 cut(s) 594
BsuI GTATCC 1 cut(s) 1676
BsuTUI ATCGAT 1 cut(s) 594
BtgI CCRYGG 1 cut(s) 1294
BtgZI GCGATG 1 cut(s) 997
BtrI CACGTC 1 cut(s) 128
BtsCI GGATG 6 cut(s) 187, 636, 748, 1585, 1629, 1696
BtsIMutI CAGTG 3 cut(s) 114, 1143, 1346
Cac8I GCNNGC 3 cut(s) 163, 1012, 1255
CaiI CAGNNNCTG 1 cut(s) 1874
CciI TCATGA 1 cut(s) 1192
ClaI ATCGAT 1 cut(s) 594
CseI GACGC 1 cut(s) 928
Csp6I GTAC 7 cut(s) 271, 316, 423, 989, 1360, 1749, 1774
CspCI CAANNNNNGTGG 4 cut(s) 607, 642, 1283, 1318
CviQI GTAC 7 cut(s) 271, 316, 423, 989, 1360, 1749, 1774
DpnI GATC 5 cut(s) 197, 224, 737, 969, 1665
DpnII GATC 5 cut(s) 195, 222, 735, 967, 1663
DraIII CACNNNGTG 2 cut(s) 1149, 1368
Eam1104I CTCTTC 3 cut(s) 775, 1167, 1542
EarI CTCTTC 3 cut(s) 775, 1167, 1542
Eco105I TACGTA 2 cut(s) 315, 844
Eco130I CCWWGG 1 cut(s) 191
Eco24I GRGCYC 1 cut(s) 1731
Eco88I CYCGRG 1 cut(s) 1611
Eco91I GGTNACC 1 cut(s) 814
EcoNI CCTNNNNNAGG 1 cut(s) 642
EcoO65I GGTNACC 1 cut(s) 814
EcoRI GAATTC 3 cut(s) 286, 1212, 1458
EcoRII CCWGG 1 cut(s) 818
EcoT14I CCWWGG 1 cut(s) 191
EcoT22I ATGCAT 1 cut(s) 1413
EcoT38I GRGCYC 1 cut(s) 1731
ErhI CCWWGG 1 cut(s) 191
FalI AAGNNNNNCTT 4 cut(s) 141, 173, 1467, 1499
FaqI GGGAC 1 cut(s) 1290
FauI CCCGC 1 cut(s) 1410
FbaI TGATCA 1 cut(s) 222
Fnu4HI GCNGC 3 cut(s) 1269, 1872, 1893
FokI GGATG 6 cut(s) 174, 643, 755, 1592, 1616, 1703
FriOI GRGCYC 1 cut(s) 1731
Fsp4HI GCNGC 3 cut(s) 1269, 1872, 1893
FspBI CTAG 5 cut(s) 644, 1287, 1574, 1670, 1896
GluI GCNGC 3 cut(s) 1269, 1872, 1893
GsaI CCCAGC 1 cut(s) 1954
GsuI CTGGAG 2 cut(s) 841, 891
HapII CCGG 2 cut(s) 1680, 1940
HgaI GACGC 1 cut(s) 928
Hin1I GRCGYC 1 cut(s) 920
HincII GTYRAC 1 cut(s) 1327
HindII GTYRAC 1 cut(s) 1327
HindIII AAGCTT 4 cut(s) 258, 1072, 1695, 1840
HinfI GANTC 7 cut(s) 40, 591, 604, 1452, 1534, 1819, 1936
HpaI GTTAAC 1 cut(s) 1327
HpaII CCGG 2 cut(s) 1680, 1940
HphI GGTGA 3 cut(s) 928, 1543, 1838
Hpy166II GTNNAC 7 cut(s) 989, 1159, 1327, 1362, 1519, 1711, 1751
Hpy188I TCNGA 6 cut(s) 227, 603, 888, 945, 1451, 1457
Hpy188III TCNNGA 7 cut(s) 17, 1193, 1209, 1220, 1569, 1611, 1933
Hpy8I GTNNAC 7 cut(s) 989, 1159, 1327, 1362, 1519, 1711, 1751
Hpy99I CGWCG 1 cut(s) 488
HpyAV CCTTC 3 cut(s) 642, 662, 1577
HpyCH4III ACNGT 6 cut(s) 109, 1033, 1163, 1283, 1499, 1596
HpyCH4IV ACGT 6 cut(s) 92, 127, 314, 843, 1626, 1772
HpyF10VI GCNNNNNNNGC 4 cut(s) 257, 518, 1007, 1726
HpySE526I ACGT 6 cut(s) 92, 127, 314, 843, 1626, 1772
Hsp92I GRCGYC 1 cut(s) 920
Ksp22I TGATCA 1 cut(s) 222
KspAI GTTAAC 1 cut(s) 1327
Kzo9I GATC 5 cut(s) 195, 222, 735, 967, 1663
Lsp1109I GCAGC 3 cut(s) 1255, 1858, 1904
LweI GCATC 7 cut(s) 79, 146, 270, 1072, 1707, 1803, 1879
MaeI CTAG 5 cut(s) 644, 1287, 1574, 1670, 1896
MaeII ACGT 6 cut(s) 92, 127, 314, 843, 1626, 1772
MaeIII GTNAC 4 cut(s) 814, 916, 995, 1531
MalI GATC 5 cut(s) 197, 224, 737, 969, 1665
MboI GATC 5 cut(s) 195, 222, 735, 967, 1663
MfeI CAATTG 2 cut(s) 354, 1651
MflI RGATCY 2 cut(s) 735, 967
MhlI GDGCHC 2 cut(s) 114, 1731
MlyI GAGTC 4 cut(s) 613, 1528, 1828, 1930
MmeI TCCRAC 2 cut(s) 1748, 1881
MnlI CCTC 9 cut(s) 112, 195, 657, 805, 830, 971, 1522, 1607, 1916
Mph1103I ATGCAT 1 cut(s) 1413
MroXI GAANNNNTTC 1 cut(s) 245
MslI CAYNNNNRTG 3 cut(s) 381, 698, 1317
MspA1I CMGCKG 1 cut(s) 1871
MspI CCGG 2 cut(s) 1680, 1940
MspR9I CCNGG 2 cut(s) 820, 1941
MunI CAATTG 2 cut(s) 354, 1651
Mva1269I GAATGC 2 cut(s) 523, 1786
MvaI CCWGG 1 cut(s) 820
MvnI CGCG 3 cut(s) 251, 1001, 1740
MwoI GCNNNNNNNGC 4 cut(s) 257, 518, 1007, 1726
NciI CCSGG 1 cut(s) 1941
NdeII GATC 5 cut(s) 195, 222, 735, 967, 1663
NmuCI GTSAC 2 cut(s) 916, 1531
NsiI ATGCAT 1 cut(s) 1413
NspI RCATGY 1 cut(s) 339
NspV TTCGAA 1 cut(s) 239
PaeR7I CTCGAG 1 cut(s) 1611
PagI TCATGA 1 cut(s) 1192
PcsI WCGNNNNNNNCGW 2 cut(s) 311, 849
PctI GAATGC 2 cut(s) 523, 1786
PdmI GAANNNNTTC 1 cut(s) 245
PfeI GAWTC 3 cut(s) 40, 591, 1452
PkrI GCNGC 3 cut(s) 1270, 1873, 1894
PleI GAGTC 4 cut(s) 612, 1528, 1827, 1930
PpsI GAGTC 4 cut(s) 612, 1528, 1827, 1930
Ppu21I YACGTR 2 cut(s) 315, 844
Psp6I CCWGG 1 cut(s) 818
PspEI GGTNACC 1 cut(s) 814
PspFI CCCAGC 1 cut(s) 1950
PspGI CCWGG 1 cut(s) 818
PstNI CAGNNNCTG 1 cut(s) 1874
PsuI RGATCY 2 cut(s) 735, 967
PvuII CAGCTG 1 cut(s) 1871
RsaI GTAC 7 cut(s) 272, 317, 424, 990, 1361, 1750, 1775
RsaNI GTAC 7 cut(s) 271, 316, 423, 989, 1360, 1749, 1774
RseI CAYNNNNRTG 3 cut(s) 381, 698, 1317
SatI GCNGC 3 cut(s) 1269, 1872, 1893
Sau3AI GATC 5 cut(s) 195, 222, 735, 967, 1663
SchI GAGTC 4 cut(s) 613, 1528, 1828, 1930
ScrFI CCNGG 2 cut(s) 820, 1941
SduI GDGCHC 2 cut(s) 114, 1731
SfaNI GCATC 7 cut(s) 79, 146, 270, 1072, 1707, 1803, 1879
SfcI CTRYAG 1 cut(s) 105
Sfr274I CTCGAG 1 cut(s) 1611
SfuI TTCGAA 1 cut(s) 239
SlaI CTCGAG 1 cut(s) 1611
SmiMI CAYNNNNRTG 3 cut(s) 381, 698, 1317
SmlI CTYRAG 4 cut(s) 34, 461, 1611, 1931
SmoI CTYRAG 4 cut(s) 34, 461, 1611, 1931
SnaBI TACGTA 2 cut(s) 315, 844
SpeI ACTAGT 1 cut(s) 1573
SsiI CCGC 5 cut(s) 251, 1001, 1251, 1417, 1784
SspMI CTAG 5 cut(s) 644, 1287, 1574, 1670, 1896
StyD4I CCNGG 2 cut(s) 818, 1939
StyI CCWWGG 1 cut(s) 191
TaaI ACNGT 6 cut(s) 109, 1033, 1163, 1283, 1499, 1596
TaiI ACGT 6 cut(s) 95, 130, 317, 846, 1629, 1775
TatI WGTACW 4 cut(s) 270, 422, 988, 1359
TfiI GAWTC 3 cut(s) 40, 591, 1452
TscAI CASTG 3 cut(s) 114, 1150, 1353
TseFI GTSAC 2 cut(s) 916, 1531
TseI GCWGC 3 cut(s) 1268, 1871, 1892
Tsp45I GTSAC 2 cut(s) 916, 1531
TspRI CASTG 3 cut(s) 114, 1150, 1353
XagI CCTNNNNNAGG 1 cut(s) 642
XapI RAATTY 4 cut(s) 180, 286, 1212, 1458
XceI RCATGY 1 cut(s) 339
XhoI CTCGAG 1 cut(s) 1611
XmnI GAANNNNTTC 1 cut(s) 245
XspI CTAG 5 cut(s) 644, 1287, 1574, 1670, 1896
Zsp2I ATGCAT 1 cut(s) 1413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.