Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8313469.1

Orthogroup ID

OG0011260

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 564

Gene Structure 563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8313469.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 563 bp

atgttatggtgcggtcgccaactccctcgtcgccatgttattgaccaattcacaactctacgcgcttcatcaaaccctcttcactactactgtaactacacaaatctccttgaagcctgcattcgatctaaatctctcgctcaaggcaagataatccatcaacttgttataaaagacaatacccagatggaggacaggtctcttgtacttgaaaaactagcccggctctacatggcctgtaatcaagttgaggtcgcacgccgagtgttcgacgaaattccccaaccaaatgttattgtttggaacctattgataagagcctatgcatggaacggaccgtttgaacgagccattgagttgtactatggcatgctcgaactgggcgttaaaccaagcaagttcacgtacccttttgttctcaaggcatgctcgggtttgcaggcactacatgttggtcaagatattcatcaacatgcgaaacgacttgggctcgactctgacgtctatgtttgcactgctttgattgatttgtacgcaaaatgtggagacttggtagctgcgca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

187

Amino Acids

21.4

Weight (kDa)

8.66

Isoelectric Point (pI)

54.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16610
fragaria_vesca	FvH4_5g18140 FvH4_5g18140
malus_domestica	MD14G1243800.v1.1
prunus_persica	Prupe.5G241400_v2.0.a1 Prupe.5G241400_v2.0.a1
pyrus_communis	pycom14g20490
rosa_chinensis	RchiOBHm_Chr7g0177471
rosa_laevigata	RLG00000005535
rosa_multiflora	Rmu_co8313469.1_g000001 Rmu_sc0036713.1_g000001 Rmu_sc0036714.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275850
rosa_rugosa	Rorug06G0406200 Rorug06G0406300
rosa_samantha	Rh7AG005800 Rh7BG005700 Rh7CG006100 Rh7DG005600
rosa_wichuraiana	Rw7G000470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	170
AasI	GACNNNNNNGTC	1 cut(s)	500
AatII	GACGTC	1 cut(s)	504
Acc16I	TGCGCA	1 cut(s)	561
AccII	CGCG	1 cut(s)	63
AciI	CCGC	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	276
AcyI	GRCGYC	1 cut(s)	501
AfaI	GTAC	4 cut(s)	207, 362, 407, 533
AfiI	CCNNNNNNNGG	2 cut(s)	190, 327
AflIII	ACRYGT	1 cut(s)	448
AgsI	TTSAA	3 cut(s)	113, 212, 344
AluBI	AGCT	1 cut(s)	557
AluI	AGCT	1 cut(s)	557
Alw26I	GTCTC	2 cut(s)	204, 540
Ama87I	CYCGRG	1 cut(s)	430
AoxI	GGCC	1 cut(s)	234
ApeKI	GCWGC	1 cut(s)	557
ApoI	RAATTY	1 cut(s)	276
AspLEI	GCGC	2 cut(s)	65, 562
AspS9I	GGNCC	1 cut(s)	335
AsuC2I	CCSGG	1 cut(s)	223
AvaI	CYCGRG	1 cut(s)	430
AvaII	GGWCC	1 cut(s)	335
BanII	GRGCYC	1 cut(s)	492
BbvI	GCAGC	1 cut(s)	544
BccI	CCATC	2 cut(s)	165, 181
BcnI	CCSGG	1 cut(s)	223
BcoDI	GTCTC	2 cut(s)	204, 540
BfaI	CTAG	1 cut(s)	218
BisI	GCNGC	1 cut(s)	558
BlsI	GCNGC	1 cut(s)	559
Bme1390I	CCNGG	1 cut(s)	223
Bme18I	GGWCC	1 cut(s)	335
BmeT110I	CYCGRG	1 cut(s)	430
BmgT120I	GGNCC	1 cut(s)	335
BmiI	GGNNCC	1 cut(s)	305
BmrFI	CCNGG	1 cut(s)	223
BmrI	ACTGGG	1 cut(s)	389
BmuI	ACTGGG	1 cut(s)	389
BpuEI	CTTGAG	2 cut(s)	126, 404
BpuMI	CCSGG	1 cut(s)	223
BsaAI	YACGTR	1 cut(s)	405
BsaBI	GATNNNNATC	2 cut(s)	130, 465
BsaHI	GRCGYC	1 cut(s)	501
BsaI	GGTCTC	1 cut(s)	204
BsaXI	ACNNNNNCTCC	3 cut(s)	182, 212, 537
Bsc4I	CCNNNNNNNGG	2 cut(s)	190, 327
Bse1I	ACTGG	1 cut(s)	384
Bse8I	GATNNNNATC	2 cut(s)	130, 465
BseJI	GATNNNNATC	2 cut(s)	130, 465
BseLI	CCNNNNNNNGG	2 cut(s)	190, 327
BseNI	ACTGG	1 cut(s)	384
BseXI	GCAGC	1 cut(s)	544
Bsh1236I	CGCG	1 cut(s)	63
Bsh1285I	CGRYCG	1 cut(s)	16
BshFI	GGCC	1 cut(s)	236
BsiEI	CGRYCG	1 cut(s)	16
BsiHKCI	CYCGRG	1 cut(s)	430
BsiSI	CCGG	1 cut(s)	223
BslI	CCNNNNNNNGG	2 cut(s)	190, 327
BsmAI	GTCTC	2 cut(s)	204, 540
BsmI	GAATGC	1 cut(s)	120
BsnI	GGCC	1 cut(s)	236
Bso31I	GGTCTC	1 cut(s)	204
BsoBI	CYCGRG	1 cut(s)	430
Bsp1286I	GDGCHC	1 cut(s)	492
Bsp143I	GATC	1 cut(s)	125
BspACI	CCGC	1 cut(s)	12
BspANI	GGCC	1 cut(s)	236
BspFNI	CGCG	1 cut(s)	63
BspLI	GGNNCC	1 cut(s)	305
BspTNI	GGTCTC	1 cut(s)	204
BsrI	ACTGG	1 cut(s)	384
BssMI	GATC	1 cut(s)	125
BssNI	GRCGYC	1 cut(s)	501
Bst4CI	ACNGT	2 cut(s)	92, 339
Bst6I	CTCTTC	1 cut(s)	84
BstACI	GRCGYC	1 cut(s)	501
BstBAI	YACGTR	1 cut(s)	405
BstC8I	GCNNGC	5 cut(s)	118, 259, 371, 427, 441
BstFNI	CGCG	1 cut(s)	63
BstHHI	GCGC	2 cut(s)	65, 562
BstKTI	GATC	1 cut(s)	128
BstMAI	GTCTC	2 cut(s)	204, 540
BstMBI	GATC	1 cut(s)	125
BstMCI	CGRYCG	1 cut(s)	16
BstNSI	RCATGY	4 cut(s)	373, 429, 452, 476
BstSCI	CCNGG	1 cut(s)	221
BstUI	CGCG	1 cut(s)	63
BstV1I	GCAGC	1 cut(s)	544
BsuRI	GGCC	1 cut(s)	236
BtsI	GCAGTG	1 cut(s)	513
BtsIMutI	CAGTG	1 cut(s)	513
Cac8I	GCNNGC	5 cut(s)	118, 259, 371, 427, 441
CfoI	GCGC	2 cut(s)	65, 562
Cfr13I	GGNCC	1 cut(s)	335
CpoI	CGGWCCG	1 cut(s)	335
Csp6I	GTAC	4 cut(s)	206, 361, 406, 532
CspI	CGGWCCG	1 cut(s)	335
CviAII	CATG	7 cut(s)	35, 232, 327, 370, 426, 449, 473
CviJI	RGCY	8 cut(s)	116, 221, 226, 236, 320, 350, 490, 557
CviKI_1	RGCY	8 cut(s)	116, 221, 226, 236, 320, 350, 490, 557
CviQI	GTAC	4 cut(s)	206, 361, 406, 532
DpnI	GATC	1 cut(s)	127
DpnII	GATC	1 cut(s)	125
DrdI	GACNNNNNNGTC	1 cut(s)	500
DseDI	GACNNNNNNGTC	1 cut(s)	500
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
Eco24I	GRGCYC	1 cut(s)	492
Eco31I	GGTCTC	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	335
Eco88I	CYCGRG	1 cut(s)	430
EcoT22I	ATGCAT	1 cut(s)	328
EcoT38I	GRGCYC	1 cut(s)	492
FaeI	CATG	7 cut(s)	38, 235, 330, 373, 429, 452, 476
FatI	CATG	7 cut(s)	34, 231, 326, 369, 425, 448, 472
Fnu4HI	GCNGC	1 cut(s)	558
FriOI	GRGCYC	1 cut(s)	492
Fsp4HI	GCNGC	1 cut(s)	558
FspBI	CTAG	1 cut(s)	218
FspI	TGCGCA	1 cut(s)	561
GlaI	GCGC	2 cut(s)	64, 561
GluI	GCNGC	1 cut(s)	558
HaeIII	GGCC	1 cut(s)	236
HapII	CCGG	1 cut(s)	223
HhaI	GCGC	2 cut(s)	65, 562
Hin1I	GRCGYC	1 cut(s)	501
Hin1II	CATG	7 cut(s)	38, 235, 330, 373, 429, 452, 476
Hin6I	GCGC	2 cut(s)	63, 560
HinP1I	GCGC	2 cut(s)	63, 560
HinfI	GANTC	1 cut(s)	494
HpaII	CCGG	1 cut(s)	223
Hpy166II	GTNNAC	1 cut(s)	402
Hpy188I	TCNGA	1 cut(s)	499
Hpy188III	TCNNGA	1 cut(s)	458
Hpy8I	GTNNAC	1 cut(s)	402
Hpy99I	CGWCG	2 cut(s)	33, 275
HpyCH4III	ACNGT	2 cut(s)	92, 339
HpyCH4IV	ACGT	2 cut(s)	404, 501
HpyCH4V	TGCA	4 cut(s)	120, 326, 439, 513
HpySE526I	ACGT	2 cut(s)	404, 501
Hsp92I	GRCGYC	1 cut(s)	501
Hsp92II	CATG	7 cut(s)	38, 235, 330, 373, 429, 452, 476
HspAI	GCGC	2 cut(s)	63, 560
Kzo9I	GATC	1 cut(s)	125
LpnPI	CCDG	7 cut(s)	130, 181, 197, 236, 250, 365, 425
Lsp1109I	GCAGC	1 cut(s)	544
MaeI	CTAG	1 cut(s)	218
MaeII	ACGT	2 cut(s)	404, 501
MaeIII	GTNAC	1 cut(s)	92
MalI	GATC	1 cut(s)	127
MboI	GATC	1 cut(s)	125
MboII	GAAGA	1 cut(s)	71
MhlI	GDGCHC	1 cut(s)	492
MluCI	AATT	2 cut(s)	47, 276
MlyI	GAGTC	1 cut(s)	488
MnlI	CCTC	4 cut(s)	36, 87, 184, 244
Mph1103I	ATGCAT	1 cut(s)	328
MseI	TTAA	1 cut(s)	387
MslI	CAYNNNNRTG	1 cut(s)	471
MspI	CCGG	1 cut(s)	223
MspR9I	CCNGG	1 cut(s)	223
Mva1269I	GAATGC	1 cut(s)	120
MvnI	CGCG	1 cut(s)	63
NciI	CCSGG	1 cut(s)	223
NdeII	GATC	1 cut(s)	125
NlaIII	CATG	7 cut(s)	38, 235, 330, 373, 429, 452, 476
NlaIV	GGNNCC	1 cut(s)	305
NmeAIII	GCCGAG	1 cut(s)	287
NsbI	TGCGCA	1 cut(s)	561
NsiI	ATGCAT	1 cut(s)	328
NspI	RCATGY	4 cut(s)	373, 429, 452, 476
PaeI	GCATGC	2 cut(s)	373, 429
PciI	ACATGT	1 cut(s)	448
PcsI	WCGNNNNNNNCGW	2 cut(s)	381, 498
PctI	GAATGC	1 cut(s)	120
PkrI	GCNGC	1 cut(s)	559
PleI	GAGTC	1 cut(s)	488
PpsI	GAGTC	1 cut(s)	488
Ppu21I	YACGTR	1 cut(s)	405
PscI	ACATGT	1 cut(s)	448
PsiI	TTATAA	1 cut(s)	170
PspN4I	GGNNCC	1 cut(s)	305
PspPI	GGNCC	1 cut(s)	335
RsaI	GTAC	4 cut(s)	207, 362, 407, 533
RsaNI	GTAC	4 cut(s)	206, 361, 406, 532
RseI	CAYNNNNRTG	1 cut(s)	471
Rsr2I	CGGWCCG	1 cut(s)	335
RsrII	CGGWCCG	1 cut(s)	335
SaqAI	TTAA	1 cut(s)	387
SatI	GCNGC	1 cut(s)	558
Sau3AI	GATC	1 cut(s)	125
Sau96I	GGNCC	1 cut(s)	335
SchI	GAGTC	1 cut(s)	488
ScrFI	CCNGG	1 cut(s)	223
SduI	GDGCHC	1 cut(s)	492
SetI	ASST	6 cut(s)	200, 255, 309, 407, 504, 559
SinI	GGWCC	1 cut(s)	335
SmiMI	CAYNNNNRTG	1 cut(s)	471
SmlI	CTYRAG	2 cut(s)	141, 419
SmoI	CTYRAG	2 cut(s)	141, 419
SphI	GCATGC	2 cut(s)	373, 429
Sse9I	AATT	2 cut(s)	47, 276
SsiI	CCGC	1 cut(s)	12
SspMI	CTAG	1 cut(s)	218
StyD4I	CCNGG	1 cut(s)	221
TaaI	ACNGT	2 cut(s)	92, 339
TaiI	ACGT	2 cut(s)	407, 504
TaqI	TCGA	4 cut(s)	124, 270, 375, 492
TasI	AATT	2 cut(s)	47, 276
TatI	WGTACW	2 cut(s)	205, 360
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TscAI	CASTG	1 cut(s)	520
TseI	GCWGC	1 cut(s)	557
TspDTI	ATGAA	2 cut(s)	57, 455
TspGWI	ACGGA	1 cut(s)	348
TspRI	CASTG	1 cut(s)	520
VpaK11BI	GGWCC	1 cut(s)	335
XapI	RAATTY	1 cut(s)	276
XceI	RCATGY	4 cut(s)	373, 429, 452, 476
XspI	CTAG	1 cut(s)	218
ZraI	GACGTC	1 cut(s)	502
Zsp2I	ATGCAT	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.