Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0011260

Physical Location & Seq

Genomic Coordinates Forward (+)

32221265 .. 32226414

Gene Structure 5150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1243800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2604 bp

ATGTTTTTAAATTTTTCCTATCTTTCAATTTTGCTTATTTGTTTTTACCAAGGAAAATTTTTATTTTTGATGGCTGGTCAAGTGCATGCTCTTTTGTTGCTGAAATTACATGCATATGTATATGGGGTTACTGGAGGGAGGGAGATGTTATGTTTTGGAAGGCGATCACTCTCTCGGAGTCGGAGTCAATGCTATCATACCACTCAGCAAGCCGTAGTGATATTAACCCACAACTTTTCGACAAACACCCTCACTCGTCTCGACTTTGATTACAAACACCTTCTCGAAGCCTGCATTCGATCAAAATCCCTCCCTCAAGGCAAGAAAATCCATCAGCTCCTCCTGAAAAACACTACCCACCTCAAAGACAGCTCCTTTTTGCTTGAAAAAGTAGCCCATTTGTACATAACCTGCAATCAACTCCAGCTTGCGTGCCGCGTGTTCGATAAAATTCCCCAACCAAGTGTTATTCTTTGGAACCTTTTGATAAGAGGATACGCTTGGAACGGACCCTTTGAAAAAGCCATCGACTTGTACTATGGCATGCTCAAATCCGGCGTCCAACCCACCAACTATACTTACCCTTTTGTTCTCAAGGCGTGCTCCGGTTTACAAGCACTAGAAGTTGGCCGAGAGATCCATGAGCATGCCAGAGGACTTGGGCTTCACTCTGATGTCTACGTTTGCACTGCTTTGATCGACCTGTACGCCAAATGTGGGGACTTGGTGGAGGCTCAGAGCGTGTTCCATGGCATGCTGTACAAAGACATTGTGGCGTGGAATGCAATGATTGCTGGGTTTTCACTGCACGGTCTTTATGATGACACTGTACAGTTGCTTGTTCAAATGCAGAGAGCGGGAACAAGCCCAAACTCTTCCACCATTGTTTCGGTTCTTCCCACAGTTGCACAAGCTAATGCATTGAGGCAGGGGAAGGCAATGCATGGTTACTCCCTAAGAAGGGGCTTTAGTGGTGAGGTGGTGCTTGGTACTGGGCTTTTGGATATGTATTCTAAAAGCCAGTGCATAGCTTATGCGAGGAGAATCTTTGATGCTATGAATTTCAAGAACGAGGTTTGTTGGAGTGCTATGATAGGTGCATATGTTATCTGTGACTCTATGACAGAGGCAATAACATTGTTTCATGAAATGGTTATACGGGAGGAAATAAATCCAACAGCAGTAACTCTCGGGAGCATTCTACGAGCTTGCGCAAAGCTAACTGATCTGAGTAGAGGGAGACGGGTTCATTGCTATGCAATTAAAGCTGGGTTTGATTTAGATAAAATGGTGGGTAACACAATGCTATCTGTGTATGCGAAGTGTGGGATTATAGATGATGCAGTCAGATTCTTTGATACAATGAACTCCAAAGATACAGTTTCTTATGGTGCTATCATCTCAGGCTATGTGCAGAATGGTTATGCAAAGGAAGCTTTACTTATGTTCCATAATATGCAATTGTCTGGGATCAATCCAGATGTGGCAACCATGAAGGGTGTTTTGCCGGCTTGTTCACATTTGGCCGCTCTACAGCACGGGGCCTGTGGACATGCTTATTCAATTGTTCATGGATTTTGTACAGACACCTCAATCTGTAATGCCTTAATAGACATGTACTCAAAGTGTGGGAAGATCAATATAGGAAGGAAAGTTTTTGATAAAATGGTTACGCGTGATATTATTTCATGGAACGCAATGATAGTTGGTTATGGGAATCATGGCCTTGGGATGGAAGCAATCTCACAGTTCCATCATATGCAGTCATCTGGCATTAAGCCCGATGATGTGACTTTCATTGGCCTCTTATCTGCTTGCAGCCATTCGGGGCTTGTAACTGAAGGCAAACACTGGTTTAGTAAAATGAGTCAGGAGTTCAACATAAACCCGAGGATGGAACATTACATATGCATGGTGGATATTCTCGCCCGGGCAGGACATTTGGATGAGGCACACAGTTTCATCCAAAGAATGCCATTTGAGGCTGATGTTCGTGTGTGGAGTGCACTGCTTGCTGCATGCAGAGTCCATAATAATATGGAACTCGGGGAAGAAGTATCCAAGAAAATTCAAGGGAAAGGACTTGAAGGTACTGGGAATTTGGTCCTTTTATCTAACTTATACAGTGCTGTTGGGAGGTGGGATGATGCAGCCGATGTCAGAATCAAGCAGAAGGACCAAGGCCTTAAGAAGAGCCCAGGATGCAGTTGGGTTGAGATCGATGGCGTTATCCATGGATTTGTCGGTGGAGATCAGTCCCATCCTCAGTCAGCTCAGATACATGAAAAACTAGAAGAACTACTAGTAGATATGAAACAGCTGGGATATCGTGTGGAAAATAGATTTGTTCTCCAAGATGTTGAGGAAGAGGAGAAAGAAAGAATCCTCCTTTACCACAGTGAGAAACTAGCCATTGCCTATGCAATTCTTTGTCTGAGCCCGGGCAAACCCATCTTAGTTACCAAGAATTTGCGGGTTTGTGGTGATTGCCATGCTGCCATAAAGTTCATCACTCTTGTTACAAAGAGAGAAATAACTGTAAGAGATGTGAGTCGGTTTCATCATTTCAAGGATGGAATTTGCAGTTGTGCAGACTTCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

868

Amino Acids

96.79

Weight (kDa)

8.29

Isoelectric Point (pI)

38.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	154 - 201	2.7e-11	PPR repeat family
PPR	PF01535	158 - 187	6e-06	PPR repeat
PPR_2	PF13041	255 - 297	4.2e-07	PPR repeat family
PPR_2	PF13041	357 - 406	2.6e-06	PPR repeat family
PPR_2	PF13041	458 - 506	9.3e-09	PPR repeat family
PPR_2	PF13041	559 - 607	1.9e-10	PPR repeat family
E_motif	PF20431	677 - 739	8.8e-16	E motif
Eplus_motif	PF20430	744 - 768	2.2e-07	E+ motif
DYW_deaminase	PF14432	775 - 867	1e-38	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16610
fragaria_vesca	FvH4_5g18140 FvH4_5g18140
malus_domestica	MD14G1243800.v1.1
prunus_persica	Prupe.5G241400_v2.0.a1 Prupe.5G241400_v2.0.a1
pyrus_communis	pycom14g20490
rosa_chinensis	RchiOBHm_Chr7g0177471
rosa_laevigata	RLG00000005535
rosa_multiflora	Rmu_co8313469.1_g000001 Rmu_sc0036713.1_g000001 Rmu_sc0036714.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275850
rosa_rugosa	Rorug06G0406200 Rorug06G0406300
rosa_samantha	Rh7AG005800 Rh7BG005700 Rh7CG006100 Rh7DG005600
rosa_wichuraiana	Rw7G000470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1213
Acc36I	ACCTGC	1 cut(s)	419
AccBSI	CCGCTC	2 cut(s)	857, 1529
AccI	GTMKAC	1 cut(s)	678
AccII	CGCG	2 cut(s)	438, 1675
AciI	CCGC	4 cut(s)	436, 857, 1527, 2473
AclWI	GGATC	2 cut(s)	631, 1478
AcoI	YGGCCR	2 cut(s)	628, 1524
AcsI	RAATTY	8 cut(s)	10, 56, 450, 1060, 2067, 2098, 2467, 2577
AcuI	CTGAAG	1 cut(s)	1860
AcyI	GRCGYC	1 cut(s)	558
AfaI	GTAC	9 cut(s)	404, 536, 707, 761, 831, 991, 1582, 1619, 2092
AfiI	CCNNNNNNNGG	5 cut(s)	717, 960, 961, 1732, 1894
AflII	CTTAAG	1 cut(s)	2186
AflIII	ACRYGT	2 cut(s)	1614, 1673
AhlI	ACTAGT	1 cut(s)	2302
AjnI	CCWGG	1 cut(s)	2197
Alw21I	GWGCWC	2 cut(s)	605, 2008
Alw26I	GTCTC	2 cut(s)	263, 1234
Alw44I	GTGCAC	1 cut(s)	2004
AlwI	GGATC	2 cut(s)	631, 1478
Ama87I	CYCGRG	5 cut(s)	1190, 1888, 1929, 2045, 2440
AoxI	GGCC	6 cut(s)	628, 1524, 1542, 1723, 1801, 2182
ApaLI	GTGCAC	1 cut(s)	2004
ApeKI	GCWGC	4 cut(s)	1818, 2015, 2150, 2495
ApoI	RAATTY	8 cut(s)	10, 56, 450, 1060, 2067, 2098, 2467, 2577
ArsI	GACNNNNNNTTYG	2 cut(s)	543, 575
AspLEI	GCGC	1 cut(s)	1214
AspS9I	GGNCC	4 cut(s)	509, 1542, 2104, 2176
AsuC2I	CCSGG	4 cut(s)	1930, 1931, 2441, 2442
AsuHPI	GGTGA	2 cut(s)	986, 2495
AvaI	CYCGRG	5 cut(s)	1190, 1888, 1929, 2045, 2440
AvaII	GGWCC	3 cut(s)	509, 2104, 2176
BaeGI	GKGCMC	1 cut(s)	2008
BanII	GRGCYC	2 cut(s)	2198, 2441
Bbv12I	GWGCWC	2 cut(s)	605, 2008
BbvI	GCAGC	4 cut(s)	1830, 2002, 2162, 2482
BceAI	ACGGC	1 cut(s)	197
BciT130I	CCWGG	1 cut(s)	2199
BciVI	GTATCC	2 cut(s)	488, 2068
BcnI	CCSGG	4 cut(s)	1930, 1931, 2441, 2442
BcoDI	GTCTC	2 cut(s)	263, 1234
BcuI	ACTAGT	1 cut(s)	2302
BfaI	CTAG	4 cut(s)	620, 2291, 2303, 2408
BfmI	CTRYAG	1 cut(s)	1532
BfrI	CTTAAG	1 cut(s)	2186
BfuAI	ACCTGC	1 cut(s)	419
BfuI	GTATCC	2 cut(s)	488, 2068
BisI	GCNGC	6 cut(s)	436, 1527, 1819, 2016, 2151, 2496
BlsI	GCNGC	6 cut(s)	437, 1528, 1820, 2017, 2152, 2497
Bme1390I	CCNGG	5 cut(s)	1930, 1931, 2199, 2441, 2442
Bme18I	GGWCC	3 cut(s)	509, 2104, 2176
BmeT110I	CYCGRG	5 cut(s)	1190, 1888, 1929, 2045, 2440
BmgT120I	GGNCC	4 cut(s)	509, 1542, 2104, 2176
BmiI	GGNNCC	3 cut(s)	479, 511, 1543
BmrFI	CCNGG	5 cut(s)	1930, 1931, 2199, 2441, 2442
BmrI	ACTGGG	2 cut(s)	1002, 2103
BmsI	GCATC	4 cut(s)	1042, 1330, 2137, 2192
BmuI	ACTGGG	2 cut(s)	1002, 2103
BpmI	CTGGAG	2 cut(s)	153, 407
BpuEI	CTTGAG	2 cut(s)	300, 578
BpuMI	CCSGG	4 cut(s)	1930, 1931, 2441, 2442
Bsa29I	ATCGAT	1 cut(s)	2220
BsaBI	GATNNNNATC	1 cut(s)	304
BsaHI	GRCGYC	1 cut(s)	558
BsaJI	CCNNGG	9 cut(s)	49, 748, 1726, 1889, 1929, 2179, 2197, 2233, 2440
BsaWI	WCCGGW	1 cut(s)	605
BsaXI	ACNNNNNCTCC	2 cut(s)	169, 199
Bsc4I	CCNNNNNNNGG	5 cut(s)	717, 960, 961, 1732, 1894
Bse118I	RCCGGY	1 cut(s)	1507
Bse1I	ACTGG	5 cut(s)	136, 997, 1021, 1856, 2098
Bse3DI	GCAATG	5 cut(s)	792, 945, 1249, 1704, 2412
Bse8I	GATNNNNATC	1 cut(s)	304
BseBI	CCWGG	1 cut(s)	2199
BseCI	ATCGAT	1 cut(s)	2220
BseDI	CCNNGG	9 cut(s)	49, 748, 1726, 1889, 1929, 2179, 2197, 2233, 2440
BseGI	GGATG	8 cut(s)	1737, 1899, 1951, 1962, 2149, 2207, 2260, 2578
BseJI	GATNNNNATC	1 cut(s)	304
BseLI	CCNNNNNNNGG	5 cut(s)	717, 960, 961, 1732, 1894
BseMI	GCAATG	5 cut(s)	792, 945, 1249, 1704, 2412
BseMII	CTCAG	7 cut(s)	218, 749, 1220, 1416, 2279, 2288, 2426
BseNI	ACTGG	5 cut(s)	136, 997, 1021, 1856, 2098
BseRI	GAGGAG	3 cut(s)	329, 1054, 2384
BseSI	GKGCMC	1 cut(s)	2008
BseXI	GCAGC	4 cut(s)	1830, 2002, 2162, 2482
BseYI	CCCAGC	3 cut(s)	794, 1268, 2320
BsgI	GTGCAG	2 cut(s)	791, 1433
Bsh1236I	CGCG	2 cut(s)	438, 1675
BshFI	GGCC	6 cut(s)	630, 1526, 1544, 1725, 1803, 2184
BshVI	ATCGAT	1 cut(s)	2220
BsiHKAI	GWGCWC	2 cut(s)	605, 2008
BsiHKCI	CYCGRG	5 cut(s)	1190, 1888, 1929, 2045, 2440
BsiSI	CCGG	5 cut(s)	555, 606, 1508, 1930, 2441
BslFI	GGGAC	2 cut(s)	734, 2242
BslI	CCNNNNNNNGG	5 cut(s)	717, 960, 961, 1732, 1894
BsmAI	GTCTC	2 cut(s)	263, 1234
BsmBI	CGTCTC	2 cut(s)	263, 1234
BsmFI	GGGAC	2 cut(s)	734, 2242
BsmI	GAATGC	4 cut(s)	294, 787, 1197, 1977
BsnI	GGCC	6 cut(s)	630, 1526, 1544, 1725, 1803, 2184
BsoBI	CYCGRG	5 cut(s)	1190, 1888, 1929, 2045, 2440
Bsp1286I	GDGCHC	4 cut(s)	605, 2008, 2198, 2441
Bsp1407I	TGTACA	4 cut(s)	402, 759, 829, 1580
Bsp143I	GATC	9 cut(s)	164, 299, 636, 696, 1225, 1470, 1635, 2217, 2251
Bsp19I	CCATGG	2 cut(s)	748, 2233
BspACI	CCGC	4 cut(s)	436, 857, 1527, 2473
BspANI	GGCC	6 cut(s)	630, 1526, 1544, 1725, 1803, 2184
BspCNI	CTCAG	7 cut(s)	217, 748, 1221, 1415, 2278, 2287, 2427
BspDI	ATCGAT	1 cut(s)	2220
BspFNI	CGCG	2 cut(s)	438, 1675
BspHI	TCATGA	1 cut(s)	1144
BspLI	GGNNCC	3 cut(s)	479, 511, 1543
BspMI	ACCTGC	1 cut(s)	419
BspPI	GGATC	2 cut(s)	631, 1478
BspQI	GCTCTTC	1 cut(s)	2186
BspTI	CTTAAG	1 cut(s)	2186
BsrBI	CCGCTC	2 cut(s)	857, 1529
BsrDI	GCAATG	5 cut(s)	792, 945, 1249, 1704, 2412
BsrFI	RCCGGY	1 cut(s)	1507
BsrGI	TGTACA	4 cut(s)	402, 759, 829, 1580
BsrI	ACTGG	5 cut(s)	136, 997, 1021, 1856, 2098
BssAI	RCCGGY	1 cut(s)	1507
BssECI	CCNNGG	9 cut(s)	49, 748, 1726, 1889, 1929, 2179, 2197, 2233, 2440
BssMI	GATC	9 cut(s)	164, 299, 636, 696, 1225, 1470, 1635, 2217, 2251
BssNI	GRCGYC	1 cut(s)	558
BssT1I	CCWWGG	5 cut(s)	49, 748, 1726, 2179, 2233
Bst2UI	CCWGG	1 cut(s)	2199
Bst6I	CTCTTC	3 cut(s)	880, 2186, 2361
BstACI	GRCGYC	1 cut(s)	558
BstAFI	CTTAAG	1 cut(s)	2186
BstAPI	GCANNNNNTGC	2 cut(s)	791, 2012
BstAUI	TGTACA	4 cut(s)	402, 759, 829, 1580
BstDEI	CTNAG	9 cut(s)	204, 735, 956, 1229, 1402, 2265, 2274, 2435, 2455
BstDSI	CCRYGG	2 cut(s)	748, 2233
BstF5I	GGATG	8 cut(s)	1737, 1899, 1951, 1962, 2149, 2207, 2260, 2578
BstFNI	CGCG	2 cut(s)	438, 1675
BstHHI	GCGC	1 cut(s)	1214
BstKTI	GATC	9 cut(s)	167, 302, 639, 699, 1228, 1473, 1638, 2220, 2254
BstMAI	GTCTC	2 cut(s)	263, 1234
BstMBI	GATC	9 cut(s)	164, 299, 636, 696, 1225, 1470, 1635, 2217, 2251
BstMWI	GCNNNNNNNGC	6 cut(s)	782, 791, 1265, 1433, 2012, 2202
BstNI	CCWGG	1 cut(s)	2199
BstNSI	RCATGY	8 cut(s)	89, 113, 547, 650, 757, 1556, 1618, 2022
BstSCI	CCNGG	5 cut(s)	1928, 1929, 2197, 2439, 2440
BstSFI	CTRYAG	1 cut(s)	1532
BstSLI	GKGCMC	1 cut(s)	2008
BstUI	CGCG	2 cut(s)	438, 1675
BstV1I	GCAGC	4 cut(s)	1830, 2002, 2162, 2482
BstX2I	RGATCY	1 cut(s)	636
BstYI	RGATCY	1 cut(s)	636
Bsu15I	ATCGAT	1 cut(s)	2220
BsuI	GTATCC	2 cut(s)	488, 2068
BsuRI	GGCC	6 cut(s)	630, 1526, 1544, 1725, 1803, 2184
BsuTUI	ATCGAT	1 cut(s)	2220
BtgI	CCRYGG	2 cut(s)	748, 2233
BtsCI	GGATG	8 cut(s)	1737, 1899, 1951, 1962, 2149, 2207, 2260, 2578
BtsI	GCAGTG	3 cut(s)	687, 803, 2006
BtsIMutI	CAGTG	8 cut(s)	687, 803, 825, 1028, 1849, 2006, 2131, 2404
BveI	ACCTGC	1 cut(s)	419
CciI	TCATGA	1 cut(s)	1144
CfoI	GCGC	1 cut(s)	1214
Cfr10I	RCCGGY	1 cut(s)	1507
Cfr13I	GGNCC	4 cut(s)	509, 1542, 2104, 2176
Cfr9I	CCCGGG	2 cut(s)	1929, 2440
ClaI	ATCGAT	1 cut(s)	2220
CseI	GACGC	1 cut(s)	547
Csp6I	GTAC	9 cut(s)	403, 535, 706, 760, 830, 990, 1581, 1618, 2091
CviQI	GTAC	9 cut(s)	403, 535, 706, 760, 830, 990, 1581, 1618, 2091
DdeI	CTNAG	9 cut(s)	204, 735, 956, 1229, 1402, 2265, 2274, 2435, 2455
DpnI	GATC	9 cut(s)	166, 301, 638, 698, 1227, 1472, 1637, 2219, 2253
DpnII	GATC	9 cut(s)	164, 299, 636, 696, 1225, 1470, 1635, 2217, 2251
DraI	TTTAAA	1 cut(s)	9
EaeI	YGGCCR	2 cut(s)	628, 1524
Eam1104I	CTCTTC	3 cut(s)	880, 2186, 2361
EarI	CTCTTC	3 cut(s)	880, 2186, 2361
Eco130I	CCWWGG	5 cut(s)	49, 748, 1726, 2179, 2233
Eco147I	AGGCCT	1 cut(s)	2184
Eco24I	GRGCYC	2 cut(s)	2198, 2441
Eco32I	GATATC	1 cut(s)	2327
Eco47I	GGWCC	3 cut(s)	509, 2104, 2176
Eco57I	CTGAAG	1 cut(s)	1860
Eco88I	CYCGRG	5 cut(s)	1190, 1888, 1929, 2045, 2440
EcoO109I	RGGNCCY	1 cut(s)	1542
EcoRII	CCWGG	1 cut(s)	2197
EcoRV	GATATC	1 cut(s)	2327
EcoT14I	CCWWGG	5 cut(s)	49, 748, 1726, 2179, 2233
EcoT22I	ATGCAT	4 cut(s)	115, 922, 945, 1913
EcoT38I	GRGCYC	2 cut(s)	2198, 2441
ErhI	CCWWGG	5 cut(s)	49, 748, 1726, 2179, 2233
Esp3I	CGTCTC	2 cut(s)	263, 1234
FalI	AAGNNNNNCTT	2 cut(s)	1425, 1457
FaqI	GGGAC	2 cut(s)	734, 2242
FauI	CCCGC	2 cut(s)	850, 2466
FauNDI	CATATG	4 cut(s)	115, 1102, 1758, 1907
FblI	GTMKAC	1 cut(s)	678
Fnu4HI	GCNGC	6 cut(s)	436, 1527, 1819, 2016, 2151, 2496
FokI	GGATG	8 cut(s)	1744, 1906, 1949, 1958, 2156, 2214, 2247, 2585
FriOI	GRGCYC	2 cut(s)	2198, 2441
Fsp4HI	GCNGC	6 cut(s)	436, 1527, 1819, 2016, 2151, 2496
FspBI	CTAG	4 cut(s)	620, 2291, 2303, 2408
FspI	TGCGCA	1 cut(s)	1213
GlaI	GCGC	1 cut(s)	1213
GluI	GCNGC	6 cut(s)	436, 1527, 1819, 2016, 2151, 2496
GsaI	CCCAGC	3 cut(s)	798, 1272, 2324
GsuI	CTGGAG	2 cut(s)	153, 407
HaeIII	GGCC	6 cut(s)	630, 1526, 1544, 1725, 1803, 2184
HapII	CCGG	5 cut(s)	555, 606, 1508, 1930, 2441
HgaI	GACGC	1 cut(s)	547
HhaI	GCGC	1 cut(s)	1214
Hin1I	GRCGYC	1 cut(s)	558
Hin6I	GCGC	1 cut(s)	1212
HinP1I	GCGC	1 cut(s)	1212
HindIII	AAGCTT	1 cut(s)	1434
HpaII	CCGG	5 cut(s)	555, 606, 1508, 1930, 2441
HphI	GGTGA	2 cut(s)	986, 2495
Hpy166II	GTNNAC	5 cut(s)	611, 679, 1517, 1550, 2006
Hpy188I	TCNGA	9 cut(s)	177, 183, 673, 738, 1230, 1349, 2162, 2277, 2436
Hpy188III	TCNNGA	8 cut(s)	260, 284, 343, 1066, 1145, 1192, 1478, 1871
Hpy8I	GTNNAC	5 cut(s)	611, 679, 1517, 1550, 2006
HpyAV	CCTTC	9 cut(s)	153, 290, 928, 954, 1489, 1641, 1835, 2081, 2167
HpyCH4IV	ACGT	1 cut(s)	681
HpyF10VI	GCNNNNNNNGC	6 cut(s)	782, 791, 1265, 1433, 2012, 2202
HpyF3I	CTNAG	9 cut(s)	204, 735, 956, 1229, 1402, 2265, 2274, 2435, 2455
HpySE526I	ACGT	1 cut(s)	681
Hsp92I	GRCGYC	1 cut(s)	558
HspAI	GCGC	1 cut(s)	1212
KroI	GCCGGC	1 cut(s)	1507
KroNI	GCCGGC	1 cut(s)	1509
Kzo9I	GATC	9 cut(s)	164, 299, 636, 696, 1225, 1470, 1635, 2217, 2251
LguI	GCTCTTC	1 cut(s)	2186
LmnI	GCTCC	4 cut(s)	342, 377, 608, 1194
Lsp1109I	GCAGC	4 cut(s)	1830, 2002, 2162, 2482
LweI	GCATC	4 cut(s)	1042, 1330, 2137, 2192
MaeI	CTAG	4 cut(s)	620, 2291, 2303, 2408
MaeII	ACGT	1 cut(s)	681
MalI	GATC	9 cut(s)	166, 301, 638, 698, 1227, 1472, 1637, 2219, 2253
MbiI	CCGCTC	2 cut(s)	857, 1529
MboI	GATC	9 cut(s)	164, 299, 636, 696, 1225, 1470, 1635, 2217, 2251
MboII	GAAGA	7 cut(s)	867, 887, 1645, 2063, 2203, 2306, 2378
MfeI	CAATTG	2 cut(s)	1460, 1563
MflI	RGATCY	1 cut(s)	636
MhlI	GDGCHC	4 cut(s)	605, 2008, 2198, 2441
MluI	ACGCGT	1 cut(s)	1673
MlyI	GAGTC	6 cut(s)	187, 193, 1109, 1876, 2034, 2560
MmeI	TCCRAC	4 cut(s)	161, 586, 1061, 1199
Mph1103I	ATGCAT	4 cut(s)	115, 922, 945, 1913
MroNI	GCCGGC	1 cut(s)	1507
MseI	TTAA	6 cut(s)	8, 224, 1263, 1607, 1776, 2187
MslI	CAYNNNNRTG	6 cut(s)	114, 645, 672, 1254, 1910, 1944
MspA1I	CMGCKG	1 cut(s)	2320
MspCI	CTTAAG	1 cut(s)	2186
MspI	CCGG	5 cut(s)	555, 606, 1508, 1930, 2441
MspR9I	CCNGG	5 cut(s)	1930, 1931, 2199, 2441, 2442
MunI	CAATTG	2 cut(s)	1460, 1563
Mva1269I	GAATGC	4 cut(s)	294, 787, 1197, 1977
MvaI	CCWGG	1 cut(s)	2199
MvnI	CGCG	2 cut(s)	438, 1675
MwoI	GCNNNNNNNGC	6 cut(s)	782, 791, 1265, 1433, 2012, 2202
NaeI	GCCGGC	1 cut(s)	1509
NciI	CCSGG	4 cut(s)	1930, 1931, 2441, 2442
NcoI	CCATGG	2 cut(s)	748, 2233
NdeI	CATATG	4 cut(s)	115, 1102, 1758, 1907
NdeII	GATC	9 cut(s)	164, 299, 636, 696, 1225, 1470, 1635, 2217, 2251
NgoMIV	GCCGGC	1 cut(s)	1507
NlaIV	GGNNCC	3 cut(s)	479, 511, 1543
NmeAIII	GCCGAG	1 cut(s)	656
NmuCI	GTSAC	2 cut(s)	1112, 1789
NsbI	TGCGCA	1 cut(s)	1213
NsiI	ATGCAT	4 cut(s)	115, 922, 945, 1913
NspI	RCATGY	8 cut(s)	89, 113, 547, 650, 757, 1556, 1618, 2022
PaeI	GCATGC	5 cut(s)	89, 547, 650, 757, 2022
PagI	TCATGA	1 cut(s)	1144
PceI	AGGCCT	1 cut(s)	2184
PciI	ACATGT	1 cut(s)	1614
PciSI	GCTCTTC	1 cut(s)	2186
PctI	GAATGC	4 cut(s)	294, 787, 1197, 1977
PdiI	GCCGGC	1 cut(s)	1509
PfeI	GAWTC	5 cut(s)	1044, 1350, 1717, 2163, 2382
PkrI	GCNGC	6 cut(s)	437, 1528, 1820, 2017, 2152, 2497
PleI	GAGTC	6 cut(s)	186, 192, 1109, 1875, 2033, 2559
PpsI	GAGTC	6 cut(s)	186, 192, 1109, 1875, 2033, 2559
PscI	ACATGT	1 cut(s)	1614
Psp6I	CCWGG	1 cut(s)	2197
PspFI	CCCAGC	3 cut(s)	794, 1268, 2320
PspGI	CCWGG	1 cut(s)	2197
PspN4I	GGNNCC	3 cut(s)	479, 511, 1543
PspPI	GGNCC	4 cut(s)	509, 1542, 2104, 2176
PsuI	RGATCY	1 cut(s)	636
PvuII	CAGCTG	1 cut(s)	2320
RsaI	GTAC	9 cut(s)	404, 536, 707, 761, 831, 991, 1582, 1619, 2092
RsaNI	GTAC	9 cut(s)	403, 535, 706, 760, 830, 990, 1581, 1618, 2091
RseI	CAYNNNNRTG	6 cut(s)	114, 645, 672, 1254, 1910, 1944
SapI	GCTCTTC	1 cut(s)	2186
SaqAI	TTAA	6 cut(s)	8, 224, 1263, 1607, 1776, 2187
SatI	GCNGC	6 cut(s)	436, 1527, 1819, 2016, 2151, 2496
Sau3AI	GATC	9 cut(s)	164, 299, 636, 696, 1225, 1470, 1635, 2217, 2251
Sau96I	GGNCC	4 cut(s)	509, 1542, 2104, 2176
SchI	GAGTC	6 cut(s)	187, 193, 1109, 1876, 2034, 2560
ScrFI	CCNGG	5 cut(s)	1930, 1931, 2199, 2441, 2442
SduI	GDGCHC	4 cut(s)	605, 2008, 2198, 2441
SfaNI	GCATC	4 cut(s)	1042, 1330, 2137, 2192
SfcI	CTRYAG	1 cut(s)	1532
SinI	GGWCC	3 cut(s)	509, 2104, 2176
SmaI	CCCGGG	2 cut(s)	1931, 2442
SmiMI	CAYNNNNRTG	6 cut(s)	114, 645, 672, 1254, 1910, 1944
SmlI	CTYRAG	3 cut(s)	315, 593, 2186
SmoI	CTYRAG	3 cut(s)	315, 593, 2186
SpeI	ACTAGT	1 cut(s)	2302
SphI	GCATGC	5 cut(s)	89, 547, 650, 757, 2022
SrfI	GCCCGGGC	2 cut(s)	1931, 2442
SseBI	AGGCCT	1 cut(s)	2184
SsiI	CCGC	4 cut(s)	436, 857, 1527, 2473
SspMI	CTAG	4 cut(s)	620, 2291, 2303, 2408
StuI	AGGCCT	1 cut(s)	2184
StyD4I	CCNGG	5 cut(s)	1928, 1929, 2197, 2439, 2440
StyI	CCWWGG	5 cut(s)	49, 748, 1726, 2179, 2233
TaiI	ACGT	1 cut(s)	684
TaqI	TCGA	8 cut(s)	239, 261, 285, 298, 444, 528, 699, 2220
TatI	WGTACW	6 cut(s)	402, 534, 759, 829, 1580, 1617
TauI	GCSGC	2 cut(s)	438, 1529
TfiI	GAWTC	5 cut(s)	1044, 1350, 1717, 2163, 2382
Tru1I	TTAA	6 cut(s)	8, 224, 1263, 1607, 1776, 2187
Tru9I	TTAA	6 cut(s)	8, 224, 1263, 1607, 1776, 2187
TscAI	CASTG	8 cut(s)	694, 810, 832, 1028, 1856, 2013, 2131, 2404
TseFI	GTSAC	2 cut(s)	1112, 1789
TseI	GCWGC	4 cut(s)	1818, 2015, 2150, 2495
Tsp45I	GTSAC	2 cut(s)	1112, 1789
TspGWI	ACGGA	1 cut(s)	522
TspMI	CCCGGG	2 cut(s)	1929, 2440
TspRI	CASTG	8 cut(s)	694, 810, 832, 1028, 1856, 2013, 2131, 2404
Vha464I	CTTAAG	1 cut(s)	2186
VneI	GTGCAC	1 cut(s)	2004
VpaK11BI	GGWCC	3 cut(s)	509, 2104, 2176
XapI	RAATTY	8 cut(s)	10, 56, 450, 1060, 2067, 2098, 2467, 2577
XceI	RCATGY	8 cut(s)	89, 113, 547, 650, 757, 1556, 1618, 2022
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2205
XmaI	CCCGGG	2 cut(s)	1929, 2440
XmiI	GTMKAC	1 cut(s)	678
XspI	CTAG	4 cut(s)	620, 2291, 2303, 2408
Zsp2I	ATGCAT	4 cut(s)	115, 922, 945, 1913

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.