Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0011260

Physical Location & Seq

Genomic Coordinates Reverse (-)

480756 .. 486070

Gene Structure 5315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG005600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1500 bp

ATGTTATGGTGCGGTCGCCAACTCCCTCGTCGCCATGTTATTGACCAATTCACAACTCTACGCGCTTCATCAAACCCTCTTCACTACTACTGTAACTACACAAATCTCCTTGAAGCCTGCATTCGATCTAAATCTCTCGCTCAAGCCAAGATAATCCATCAACTCGTTATAAAAGACAATACCCAGATGGAGGACAGGTCTCTTCTACTTGAAAAACTAGCCCGGCTCTACATGGCCTGTAATCAAGTTGAGGTCGCACGCCGAGTGTTCGACGAAATTCCCCAACCAAATGTTATTATTTGGAACCTATTGATAAGAGCCTATGCATGGAACGGACCGTTTGAACGAGCCATTGAGTTGTACTATGGCATGCTCGAACTGGGCGTTAAACCAAGCAAGTACACGTACCCTTTTGTTCTCAAGGCATGCTCGGGTTTGCAGGCACTACATGTTGGTCAAGATATTCATCAACATGCGAAACGACTTGGGCTCGACTCTGACGTCTATGTTTGCACTGCTTTGATTGATTTGTACGCAAAATGTGGAGACTTGGTAGCTGCGCAGAGTGTGTTTGATGGTATGTTGTATAAAGATGTTGTGGCGTGGAATGCTATGATTGCTGGGTTTTCGCTTCATGGTCTTTATGGTGACACTGCAGAGTTGCTGGTCCAAATGCAGAGAGCGGGAACTGCCCCGAATGCCTCTACCATTGTTGCGGTTCTTCCCACAGTGGCGCAAGCTACCGCGCTGAGCCAAGGGAAGGCAATACATGGTTACTCCATGAGGAGGAGGTTTAGTGATGACGTGGTACTTAGTACTGCGCTTTTGGATATGTATGCTAAATGTCAGTGCATAGTTTACGCGAGGAGAATCTTTGATGCAATGAGTGTCAGGAATGAGGTTTGTTGGAGTGCGATGGTAGGCGCATATGTTGGCTGTGATTCCATGAGAGAGGCAATGTCATTGTTTGATGAAATAGTGGTGAAAGATGTAAGAAAACTGACACGAGTTACACTGGGGAGCATACTCCGAGCTTGCACAAAGCTAACTGATCTGAGTAGAGGGAGACGAGTACATTGTTATGCAATTAAAGCCGGTTTTGATTTAAATACAATGGTGGGCAACACCATCCTTTCTATGTATGCAAAGTGTGGGATTATAGATGATGCATTCAGGTTATTTGATATAATGGATCCAAAAGACACGGTTTCTTATGGTGCTATCATCTCAGGCTGTGTGCAGAATGGTTATGCAAAGGAAGCTTTGCTTATATTCCACCAAATGCAGTTGTCTGGGATTGATCCAGATTTGGCAACCTTGGCAGGTGTTTTGCCGGCTTGTTCACATTTGGCAGCCCTGCAACATGGGGCCTGTGGCCATGGTTATTCAATTGTTCATGGCCTTGTTACAGACACCTCAATTTGTAATGCCTTAATAGACATTCCCTCACACAACCCCCAGAAAGCTCAGAGTGGAAGTCATCTTCTGAGAGAGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

499

Amino Acids

55.27

Weight (kDa)

8.34

Isoelectric Point (pI)

42.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	96 - 143	1.2e-10	PPR repeat family
PPR	PF01535	100 - 129	9.7e-06	PPR repeat
PPR_2	PF13041	197 - 237	9.5e-06	PPR repeat family
PPR_2	PF13041	400 - 447	1.5e-07	PPR repeat family
PPR	PF01535	403 - 433	4.3e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16610
fragaria_vesca	FvH4_5g18140 FvH4_5g18140
malus_domestica	MD14G1243800.v1.1
prunus_persica	Prupe.5G241400_v2.0.a1 Prupe.5G241400_v2.0.a1
pyrus_communis	pycom14g20490
rosa_chinensis	RchiOBHm_Chr7g0177471
rosa_laevigata	RLG00000005535
rosa_multiflora	Rmu_co8313469.1_g000001 Rmu_sc0036713.1_g000001 Rmu_sc0036714.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275850
rosa_rugosa	Rorug06G0406200 Rorug06G0406300
rosa_samantha	Rh7AG005800 Rh7BG005700 Rh7CG006100 Rh7DG005600
rosa_wichuraiana	Rw7G000470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	170
AarI	CACCTGC	1 cut(s)	1313
AasI	GACNNNNNNGTC	1 cut(s)	500
AatII	GACGTC	1 cut(s)	504
Acc16I	TGCGCA	1 cut(s)	561
Acc36I	ACCTGC	1 cut(s)	1313
AccBSI	CCGCTC	1 cut(s)	683
AccII	CGCG	3 cut(s)	63, 746, 863
AciI	CCGC	4 cut(s)	12, 683, 716, 744
AclWI	GGATC	3 cut(s)	1187, 1200, 1295
AcoI	YGGCCR	1 cut(s)	1375
AcsI	RAATTY	1 cut(s)	276
AcyI	GRCGYC	1 cut(s)	501
AfaI	GTAC	7 cut(s)	362, 401, 407, 533, 810, 817, 1074
AfiI	CCNNNNNNNGG	4 cut(s)	190, 327, 760, 786
AflIII	ACRYGT	2 cut(s)	402, 448
AgsI	TTSAA	4 cut(s)	113, 212, 344, 1389
AjiI	CACGTC	1 cut(s)	805
AluBI	AGCT	6 cut(s)	557, 740, 1034, 1045, 1262, 1466
AluI	AGCT	6 cut(s)	557, 740, 1034, 1045, 1262, 1466
Alw26I	GTCTC	3 cut(s)	204, 540, 1060
AlwI	GGATC	3 cut(s)	1187, 1200, 1295
Ama87I	CYCGRG	1 cut(s)	430
AoxI	GGCC	4 cut(s)	234, 1368, 1375, 1399
ApeKI	GCWGC	2 cut(s)	557, 1352
ApoI	RAATTY	1 cut(s)	276
AspLEI	GCGC	6 cut(s)	65, 562, 736, 748, 823, 926
AspS9I	GGNCC	3 cut(s)	335, 667, 1368
AsuC2I	CCSGG	1 cut(s)	223
AsuHPI	GGTGA	2 cut(s)	659, 994
AvaI	CYCGRG	1 cut(s)	430
AvaII	GGWCC	2 cut(s)	335, 667
BalI	TGGCCA	1 cut(s)	1377
BamHI	GGATCC	1 cut(s)	1192
BanII	GRGCYC	1 cut(s)	492
BauI	CACGAG	1 cut(s)	1005
BbvI	GCAGC	2 cut(s)	544, 1364
BccI	CCATC	5 cut(s)	165, 181, 569, 910, 1136
BcnI	CCSGG	1 cut(s)	223
BcoDI	GTCTC	3 cut(s)	204, 540, 1060
BfaI	CTAG	1 cut(s)	218
BfmI	CTRYAG	1 cut(s)	654
BfuAI	ACCTGC	1 cut(s)	1313
BisI	GCNGC	2 cut(s)	558, 1353
BlpI	GCTNAGC	1 cut(s)	749
BlsI	GCNGC	2 cut(s)	559, 1354
BmcAI	AGTACT	1 cut(s)	817
Bme1390I	CCNGG	1 cut(s)	223
Bme18I	GGWCC	2 cut(s)	335, 667
BmeT110I	CYCGRG	1 cut(s)	430
BmgBI	CACGTC	1 cut(s)	805
BmgT120I	GGNCC	3 cut(s)	335, 667, 1368
BmiI	GGNNCC	3 cut(s)	305, 1194, 1369
BmrFI	CCNGG	1 cut(s)	223
BmrI	ACTGGG	2 cut(s)	389, 1025
BmsI	GCATC	2 cut(s)	868, 1156
BmuI	ACTGGG	2 cut(s)	389, 1025
Bpu1102I	GCTNAGC	1 cut(s)	749
BpuEI	CTTGAG	2 cut(s)	126, 404
BpuMI	CCSGG	1 cut(s)	223
BsaAI	YACGTR	1 cut(s)	405
BsaBI	GATNNNNATC	2 cut(s)	130, 465
BsaHI	GRCGYC	1 cut(s)	501
BsaI	GGTCTC	1 cut(s)	204
BsaJI	CCNNGG	3 cut(s)	754, 1317, 1378
BsaXI	ACNNNNNCTCC	6 cut(s)	182, 212, 537, 567, 781, 811
Bsc4I	CCNNNNNNNGG	4 cut(s)	190, 327, 760, 786
Bse118I	RCCGGY	2 cut(s)	1094, 1333
Bse1I	ACTGG	2 cut(s)	384, 1020
Bse3DI	GCAATG	2 cut(s)	888, 963
Bse8I	GATNNNNATC	2 cut(s)	130, 465
BseDI	CCNNGG	3 cut(s)	754, 1317, 1378
BseGI	GGATG	1 cut(s)	1128
BseJI	GATNNNNATC	2 cut(s)	130, 465
BseLI	CCNNNNNNNGG	4 cut(s)	190, 327, 760, 786
BseMI	GCAATG	2 cut(s)	888, 963
BseMII	CTCAG	5 cut(s)	740, 1046, 1242, 1478, 1481
BseNI	ACTGG	2 cut(s)	384, 1020
BseRI	GAGGAG	3 cut(s)	799, 802, 880
BseXI	GCAGC	2 cut(s)	544, 1364
BseYI	CCCAGC	1 cut(s)	620
BsgI	GTGCAG	1 cut(s)	1259
Bsh1236I	CGCG	3 cut(s)	63, 746, 863
Bsh1285I	CGRYCG	1 cut(s)	16
BshFI	GGCC	4 cut(s)	236, 1370, 1377, 1401
BsiEI	CGRYCG	1 cut(s)	16
BsiHKCI	CYCGRG	1 cut(s)	430
BsiSI	CCGG	3 cut(s)	223, 1095, 1334
BslI	CCNNNNNNNGG	4 cut(s)	190, 327, 760, 786
BsmAI	GTCTC	3 cut(s)	204, 540, 1060
BsmBI	CGTCTC	1 cut(s)	1060
BsmI	GAATGC	4 cut(s)	120, 613, 703, 1169
BsnI	GGCC	4 cut(s)	236, 1370, 1377, 1401
Bso31I	GGTCTC	1 cut(s)	204
BsoBI	CYCGRG	1 cut(s)	430
Bsp1286I	GDGCHC	1 cut(s)	492
Bsp143I	GATC	4 cut(s)	125, 1051, 1192, 1300
Bsp1720I	GCTNAGC	1 cut(s)	749
Bsp19I	CCATGG	1 cut(s)	1378
BspACI	CCGC	4 cut(s)	12, 683, 716, 744
BspANI	GGCC	4 cut(s)	236, 1370, 1377, 1401
BspCNI	CTCAG	5 cut(s)	741, 1047, 1241, 1479, 1480
BspFNI	CGCG	3 cut(s)	63, 746, 863
BspLI	GGNNCC	3 cut(s)	305, 1194, 1369
BspMAI	CTGCAG	1 cut(s)	658
BspMI	ACCTGC	1 cut(s)	1313
BspPI	GGATC	3 cut(s)	1187, 1200, 1295
BspTNI	GGTCTC	1 cut(s)	204
BsrBI	CCGCTC	1 cut(s)	683
BsrDI	GCAATG	2 cut(s)	888, 963
BsrFI	RCCGGY	2 cut(s)	1094, 1333
BsrI	ACTGG	2 cut(s)	384, 1020
BssAI	RCCGGY	2 cut(s)	1094, 1333
BssECI	CCNNGG	3 cut(s)	754, 1317, 1378
BssMI	GATC	4 cut(s)	125, 1051, 1192, 1300
BssNI	GRCGYC	1 cut(s)	501
BssSI	CACGAG	1 cut(s)	1005
BssT1I	CCWWGG	3 cut(s)	754, 1317, 1378
Bst2BI	CACGAG	1 cut(s)	1005
Bst4CI	ACNGT	4 cut(s)	92, 339, 730, 1207
Bst6I	CTCTTC	2 cut(s)	84, 207
BstACI	GRCGYC	1 cut(s)	501
BstBAI	YACGTR	1 cut(s)	405
BstC8I	GCNNGC	8 cut(s)	118, 259, 371, 427, 441, 738, 1036, 1335
BstDEI	CTNAG	6 cut(s)	749, 812, 1055, 1228, 1467, 1487
BstDSI	CCRYGG	1 cut(s)	1378
BstF5I	GGATG	1 cut(s)	1128
BstFNI	CGCG	3 cut(s)	63, 746, 863
BstHHI	GCGC	6 cut(s)	65, 562, 736, 748, 823, 926
BstKTI	GATC	4 cut(s)	128, 1054, 1195, 1303
BstMAI	GTCTC	3 cut(s)	204, 540, 1060
BstMBI	GATC	4 cut(s)	125, 1051, 1192, 1300
BstMCI	CGRYCG	1 cut(s)	16
BstMWI	GCNNNNNNNGC	7 cut(s)	608, 617, 689, 698, 1091, 1259, 1319
BstNSI	RCATGY	4 cut(s)	373, 429, 452, 476
BstSCI	CCNGG	1 cut(s)	221
BstSFI	CTRYAG	1 cut(s)	654
BstUI	CGCG	3 cut(s)	63, 746, 863
BstV1I	GCAGC	2 cut(s)	544, 1364
BstX2I	RGATCY	1 cut(s)	1192
BstYI	RGATCY	1 cut(s)	1192
BsuRI	GGCC	4 cut(s)	236, 1370, 1377, 1401
BtgI	CCRYGG	1 cut(s)	1378
BtgZI	GCGATG	1 cut(s)	929
BtrI	CACGTC	1 cut(s)	805
BtsCI	GGATG	1 cut(s)	1128
BtsI	GCAGTG	2 cut(s)	513, 651
BtsIMutI	CAGTG	5 cut(s)	513, 651, 735, 854, 1013
BveI	ACCTGC	1 cut(s)	1313
Cac8I	GCNNGC	8 cut(s)	118, 259, 371, 427, 441, 738, 1036, 1335
CfoI	GCGC	6 cut(s)	65, 562, 736, 748, 823, 926
Cfr10I	RCCGGY	2 cut(s)	1094, 1333
Cfr13I	GGNCC	3 cut(s)	335, 667, 1368
CpoI	CGGWCCG	1 cut(s)	335
Csp6I	GTAC	7 cut(s)	361, 400, 406, 532, 809, 816, 1073
CspI	CGGWCCG	1 cut(s)	335
CviQI	GTAC	7 cut(s)	361, 400, 406, 532, 809, 816, 1073
DdeI	CTNAG	6 cut(s)	749, 812, 1055, 1228, 1467, 1487
DpnI	GATC	4 cut(s)	127, 1053, 1194, 1302
DpnII	GATC	4 cut(s)	125, 1051, 1192, 1300
DraI	TTTAAA	1 cut(s)	1107
DrdI	GACNNNNNNGTC	1 cut(s)	500
DseDI	GACNNNNNNGTC	1 cut(s)	500
EaeI	YGGCCR	1 cut(s)	1375
Eam1104I	CTCTTC	2 cut(s)	84, 207
EarI	CTCTTC	2 cut(s)	84, 207
Eco130I	CCWWGG	3 cut(s)	754, 1317, 1378
Eco24I	GRGCYC	1 cut(s)	492
Eco31I	GGTCTC	1 cut(s)	204
Eco47I	GGWCC	2 cut(s)	335, 667
Eco88I	CYCGRG	1 cut(s)	430
EcoO109I	RGGNCCY	1 cut(s)	1368
EcoT14I	CCWWGG	3 cut(s)	754, 1317, 1378
EcoT22I	ATGCAT	2 cut(s)	328, 1171
EcoT38I	GRGCYC	1 cut(s)	492
ErhI	CCWWGG	3 cut(s)	754, 1317, 1378
Esp3I	CGTCTC	1 cut(s)	1060
FalI	AAGNNNNNCTT	2 cut(s)	1251, 1283
FauI	CCCGC	1 cut(s)	676
FauNDI	CATATG	1 cut(s)	928
Fnu4HI	GCNGC	2 cut(s)	558, 1353
FokI	GGATG	1 cut(s)	1115
FriOI	GRGCYC	1 cut(s)	492
Fsp4HI	GCNGC	2 cut(s)	558, 1353
FspBI	CTAG	1 cut(s)	218
FspI	TGCGCA	1 cut(s)	561
GlaI	GCGC	6 cut(s)	64, 561, 735, 747, 822, 925
GluI	GCNGC	2 cut(s)	558, 1353
GsaI	CCCAGC	1 cut(s)	624
HaeIII	GGCC	4 cut(s)	236, 1370, 1377, 1401
HapII	CCGG	3 cut(s)	223, 1095, 1334
HhaI	GCGC	6 cut(s)	65, 562, 736, 748, 823, 926
Hin1I	GRCGYC	1 cut(s)	501
Hin6I	GCGC	6 cut(s)	63, 560, 734, 746, 821, 924
HinP1I	GCGC	6 cut(s)	63, 560, 734, 746, 821, 924
HindIII	AAGCTT	1 cut(s)	1260
HinfI	GANTC	3 cut(s)	494, 870, 941
HpaII	CCGG	3 cut(s)	223, 1095, 1334
HphI	GGTGA	2 cut(s)	659, 994
Hpy166II	GTNNAC	3 cut(s)	402, 859, 1343
Hpy188I	TCNGA	5 cut(s)	499, 1031, 1056, 1470, 1488
Hpy188III	TCNNGA	3 cut(s)	458, 892, 1304
Hpy8I	GTNNAC	3 cut(s)	402, 859, 1343
Hpy99I	CGWCG	2 cut(s)	33, 275
HpyAV	CCTTC	1 cut(s)	754
HpyCH4III	ACNGT	4 cut(s)	92, 339, 730, 1207
HpyCH4IV	ACGT	3 cut(s)	404, 501, 804
HpyF10VI	GCNNNNNNNGC	7 cut(s)	608, 617, 689, 698, 1091, 1259, 1319
HpyF3I	CTNAG	6 cut(s)	749, 812, 1055, 1228, 1467, 1487
HpySE526I	ACGT	3 cut(s)	404, 501, 804
Hsp92I	GRCGYC	1 cut(s)	501
HspAI	GCGC	6 cut(s)	63, 560, 734, 746, 821, 924
KroI	GCCGGC	1 cut(s)	1333
KroNI	GCCGGC	1 cut(s)	1335
Kzo9I	GATC	4 cut(s)	125, 1051, 1192, 1300
LmnI	GCTCC	1 cut(s)	1020
Lsp1109I	GCAGC	2 cut(s)	544, 1364
LweI	GCATC	2 cut(s)	868, 1156
MaeI	CTAG	1 cut(s)	218
MaeII	ACGT	3 cut(s)	404, 501, 804
MaeIII	GTNAC	5 cut(s)	92, 647, 773, 1009, 1405
MalI	GATC	4 cut(s)	127, 1053, 1194, 1302
MbiI	CCGCTC	1 cut(s)	683
MboI	GATC	4 cut(s)	125, 1051, 1192, 1300
MboII	GAAGA	4 cut(s)	71, 194, 713, 1475
MfeI	CAATTG	1 cut(s)	1389
MflI	RGATCY	1 cut(s)	1192
MhlI	GDGCHC	1 cut(s)	492
MlsI	TGGCCA	1 cut(s)	1377
MluCI	AATT	5 cut(s)	47, 276, 1086, 1389, 1419
MluNI	TGGCCA	1 cut(s)	1377
MlyI	GAGTC	1 cut(s)	488
MmeI	TCCRAC	1 cut(s)	887
Mox20I	TGGCCA	1 cut(s)	1377
Mph1103I	ATGCAT	2 cut(s)	328, 1171
MroNI	GCCGGC	1 cut(s)	1333
MscI	TGGCCA	1 cut(s)	1377
MseI	TTAA	4 cut(s)	387, 1089, 1106, 1433
MslI	CAYNNNNRTG	2 cut(s)	471, 1080
Msp20I	TGGCCA	1 cut(s)	1377
MspI	CCGG	3 cut(s)	223, 1095, 1334
MspR9I	CCNGG	1 cut(s)	223
MunI	CAATTG	1 cut(s)	1389
Mva1269I	GAATGC	4 cut(s)	120, 613, 703, 1169
MvnI	CGCG	3 cut(s)	63, 746, 863
MwoI	GCNNNNNNNGC	7 cut(s)	608, 617, 689, 698, 1091, 1259, 1319
NaeI	GCCGGC	1 cut(s)	1335
NciI	CCSGG	1 cut(s)	223
NcoI	CCATGG	1 cut(s)	1378
NdeI	CATATG	1 cut(s)	928
NdeII	GATC	4 cut(s)	125, 1051, 1192, 1300
NgoMIV	GCCGGC	1 cut(s)	1333
NlaIV	GGNNCC	3 cut(s)	305, 1194, 1369
NmeAIII	GCCGAG	1 cut(s)	287
NmuCI	GTSAC	1 cut(s)	647
NsbI	TGCGCA	1 cut(s)	561
NsiI	ATGCAT	2 cut(s)	328, 1171
NspI	RCATGY	4 cut(s)	373, 429, 452, 476
PaeI	GCATGC	2 cut(s)	373, 429
PaqCI	CACCTGC	1 cut(s)	1313
PciI	ACATGT	1 cut(s)	448
PcsI	WCGNNNNNNNCGW	2 cut(s)	381, 498
PctI	GAATGC	4 cut(s)	120, 613, 703, 1169
PdiI	GCCGGC	1 cut(s)	1335
PfeI	GAWTC	2 cut(s)	870, 941
PkrI	GCNGC	2 cut(s)	559, 1354
PleI	GAGTC	1 cut(s)	488
PpsI	GAGTC	1 cut(s)	488
Ppu21I	YACGTR	1 cut(s)	405
PscI	ACATGT	1 cut(s)	448
PsiI	TTATAA	1 cut(s)	170
PspFI	CCCAGC	1 cut(s)	620
PspN4I	GGNNCC	3 cut(s)	305, 1194, 1369
PspPI	GGNCC	3 cut(s)	335, 667, 1368
PstI	CTGCAG	1 cut(s)	658
PsuI	RGATCY	1 cut(s)	1192
RsaI	GTAC	7 cut(s)	362, 401, 407, 533, 810, 817, 1074
RsaNI	GTAC	7 cut(s)	361, 400, 406, 532, 809, 816, 1073
RseI	CAYNNNNRTG	2 cut(s)	471, 1080
Rsr2I	CGGWCCG	1 cut(s)	335
RsrII	CGGWCCG	1 cut(s)	335
SaqAI	TTAA	4 cut(s)	387, 1089, 1106, 1433
SatI	GCNGC	2 cut(s)	558, 1353
Sau3AI	GATC	4 cut(s)	125, 1051, 1192, 1300
Sau96I	GGNCC	3 cut(s)	335, 667, 1368
ScaI	AGTACT	1 cut(s)	817
SchI	GAGTC	1 cut(s)	488
ScrFI	CCNGG	1 cut(s)	223
SduI	GDGCHC	1 cut(s)	492
SfaNI	GCATC	2 cut(s)	868, 1156
SfcI	CTRYAG	1 cut(s)	654
SinI	GGWCC	2 cut(s)	335, 667
SmiI	ATTTAAAT	1 cut(s)	1107
SmiMI	CAYNNNNRTG	2 cut(s)	471, 1080
SmlI	CTYRAG	2 cut(s)	141, 419
SmoI	CTYRAG	2 cut(s)	141, 419
SphI	GCATGC	2 cut(s)	373, 429
Sse9I	AATT	5 cut(s)	47, 276, 1086, 1389, 1419
SsiI	CCGC	4 cut(s)	12, 683, 716, 744
SspMI	CTAG	1 cut(s)	218
StyD4I	CCNGG	1 cut(s)	221
StyI	CCWWGG	3 cut(s)	754, 1317, 1378
SwaI	ATTTAAAT	1 cut(s)	1107
TaaI	ACNGT	4 cut(s)	92, 339, 730, 1207
TaiI	ACGT	3 cut(s)	407, 504, 807
TaqI	TCGA	4 cut(s)	124, 270, 375, 492
TasI	AATT	5 cut(s)	47, 276, 1086, 1389, 1419
TatI	WGTACW	4 cut(s)	360, 399, 815, 1072
TfiI	GAWTC	2 cut(s)	870, 941
Tru1I	TTAA	4 cut(s)	387, 1089, 1106, 1433
Tru9I	TTAA	4 cut(s)	387, 1089, 1106, 1433
TscAI	CASTG	5 cut(s)	520, 658, 735, 854, 1020
TseFI	GTSAC	1 cut(s)	647
TseI	GCWGC	2 cut(s)	557, 1352
Tsp45I	GTSAC	1 cut(s)	647
TspDTI	ATGAA	5 cut(s)	57, 455, 623, 987, 1385
TspGWI	ACGGA	1 cut(s)	348
TspRI	CASTG	5 cut(s)	520, 658, 735, 854, 1020
VpaK11BI	GGWCC	2 cut(s)	335, 667
XapI	RAATTY	1 cut(s)	276
XceI	RCATGY	4 cut(s)	373, 429, 452, 476
XspI	CTAG	1 cut(s)	218
ZraI	GACGTC	1 cut(s)	502
ZrmI	AGTACT	1 cut(s)	817
Zsp2I	ATGCAT	2 cut(s)	328, 1171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.