Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0011260

Physical Location & Seq

Genomic Coordinates Forward (+)

67169056 .. 67172432

Gene Structure 3377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00275850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2448 bp

ATGTTATGGTGCGGTCGCCAACTCCCTCGTCGCCATGTTATTGACCAATTCACAACTCTACGCGCACAAGCCTTTTCATCAAACCCTCTTCACTGCTACGACAGTAACTACACAAATCTCCTTGAAGCCTGCATTCGATCAAAATCTCTCGCTCAAGCCAAGATAATCCATCAACTTGTTATAAAAGACAATACCCAGATCGAGGACAGGTCTCTTCTACTTGAAAAGCTAACCCGGCTCTACTTGACCTGTAATCAAGTTGAGGTCGCACGCCGAGTGTTCGACGAAATTCCCCAACCAAATCCAAATGTTATTATTTGGAACCTATTGATAAGAGCCTATGCATGGAACGGACCGTTTGAACGAGCCATTGAGTTGTACTATGGCATGCTCGAACTGGGTGTTAAACCAAGCAAGTACACGTACCCTTTTGCTCTCAAGGCATGCTCGGGTTTGCAGGCACTACATGTTGGTCAAGATATTCATCAACATGCGAAACGACTTGGGCTCCACTCTGACGTCTATGTTTGCACTGCTTTGATTGATTTGTACGCAAAATGTGGAGACTTGGTAGCTGCGCACAGTGTGTTTGATGGTATGTTGTATAAAGATGCTGTGGCGTGGAATGCTATGATTGCTGGGTTTTCGCTTCATGGTCTTTATGGTGACACTGCAGAGTTGCTGGTTCAAATGCAGAGAGCGGGAACTGCCCCGAATGCCTCTACCATTGTTGCGGTTCTTCCCACAGTTGCGCAAGCTAACGCGCTGAGCCAAGGGAAGGCAACACATGGTTACTCCATGAGGAGGAGGTTTACTGATGACGTGGTACTTAGTACTGCGCTTTTGGATATGTATGCTAAATGTCATTGCATAGTTTACGCGAGGAGAATCTTTGATGCAATGAGTGTCAGGAATGAGGTTTGTTGGAGTGCGATGATAGGCGCATATGTTGGCTGTGATTCCATGAGAGAGGCAATGTCATTGTTTGATGAAATGGTGGTGAAAGATATAAGAAAACTGACACGAGTTACACTGGGGACCATACTCCGAGCTTGCACAAAGCTAACTGATCTGAGTAGAGGGAGACGAGTACATTGTTATGCAATTAAAGCCGGTTTTGATTTAAATACAATGGTGGGCAACACCATCCTTTCTATGTATGCAAAGTGTGGGATTATAGATGATGCATTCAGGTTATTTGATATAATGGATCCAAAAGACACGGTTTCTTATGGTGCTATCATCTCAGGTTGTGTGCAGAATGGTTATGCAAAGGAAGCTTTGCTTATATTCCACCAAATGCAGCTGTCTGGGATTGATCCAGATTTGGCAACCATGGCAGGTGTTTTGCCGGCTTGTTCACATTTGGCAGCCCTGCAACATGGGGCCTGTGGCCATGGTTATTCAATTGTTCATGGCTTTGTTACAGACACCTCAATTTGTAATGCCTTAATAGACATGTACTCGAAATGTGGGAAGATCCATATAGGCAAGCAAGTATTCGACAGAATGCTTAAGCGGGATACTGTCTCATGGAATGCAATGATAGTTGGTTATGGGATTCATGGCCTTGGGATGGAAGCAATTTCACAGTTCCACAATATGCAGGCAGCTGGAATAAAGCCCGACGATGTGACTTTCATTGGCCTCTTATCTGCTTGCAGTCATTCGGGGCTTGTCCCTGAGGGAAAACACTGGTTTAGCGCTATGAGTCAAGATTTCAGCATAACCCCAAGGATGGAACACTACATATGCATGGTGGATCTTCTTGCCCGAACCGGACTGTTGGCCGAGGCGCACAGTTTCATTCAAAGCATGCCATTTGAGGCTGATGTTCGAGTATGGAGTGCATTACTTGCTGCATGTAGGGTTCACAATAATATTGAACTTGGGGAAGAAGTCTCCAGGAAAGTTCAAGGGCTAGGATCTGAAGGTACTGGAAATTTGGTCCTCTTATCTAATATGTACAGTTCTATTGGGAGATGGGATGATGCAGCGCATGTCAGAATGAAACAGAAGGATCAAGGCCTTAAGAAGAGTCCAGGATGTAGTTGGGTCGAGATTAATGGGGTGATTCATGGATTTCTCGGTGGAGATCAGTCCCATCCTGAATCGGCTCAGGTACATGAAAAATTAGAGGAACTGCTAGTAGACATGAAAAGGATGGGATATTGTGCAGAAAATAGTTTTGTTCTCCAAGATGTTGAGGAAGAGGAGAAAGAAAGGATCCTCCTTTATCATAGTGAAAAACTAGCCATTGCTTACGGAATTCTTCATCTGAGCCCGGGCAAACCCATTTTTGTTACTAAAAATCTGCGGGTCTGTGGTGATTGCCATGCTGCTATAAAGTTCATCTCTCTTGTTACAAAGAGAGAGATAACCGTAAGAGATGTGAGTCGGTTTCATCATTTCAGTGATGGAAATTGCAGTTGTGCAGACTTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

815

Amino Acids

90.6

Weight (kDa)

7.04

Isoelectric Point (pI)

40.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	102 - 149	9.7e-10	PPR repeat family
PPR_2	PF13041	305 - 353	4.2e-06	PPR repeat family
PPR_2	PF13041	406 - 453	1.8e-07	PPR repeat family
PPR	PF01535	409 - 439	7.7e-06	PPR repeat
PPR_2	PF13041	507 - 555	1.3e-09	PPR repeat family
E_motif	PF20431	625 - 687	3.4e-18	E motif
Eplus_motif	PF20430	692 - 716	6.5e-06	E+ motif
DYW_deaminase	PF14432	723 - 815	1.3e-39	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16610
fragaria_vesca	FvH4_5g18140 FvH4_5g18140
malus_domestica	MD14G1243800.v1.1
prunus_persica	Prupe.5G241400_v2.0.a1 Prupe.5G241400_v2.0.a1
pyrus_communis	pycom14g20490
rosa_chinensis	RchiOBHm_Chr7g0177471
rosa_laevigata	RLG00000005535
rosa_multiflora	Rmu_co8313469.1_g000001 Rmu_sc0036713.1_g000001 Rmu_sc0036714.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275850
rosa_rugosa	Rorug06G0406200 Rorug06G0406300
rosa_samantha	Rh7AG005800 Rh7BG005700 Rh7CG006100 Rh7DG005600
rosa_wichuraiana	Rw7G000470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	182
AarI	CACCTGC	1 cut(s)	1331
AatII	GACGTC	1 cut(s)	522
Acc16I	TGCGCA	2 cut(s)	579, 753
Acc36I	ACCTGC	1 cut(s)	1331
AccBSI	CCGCTC	1 cut(s)	701
AccI	GTMKAC	1 cut(s)	2151
AccII	CGCG	3 cut(s)	63, 764, 881
AciI	CCGC	5 cut(s)	12, 701, 734, 1519, 2317
AclWI	GGATC	9 cut(s)	1205, 1218, 1313, 1474, 1770, 1933, 2028, 2221, 2234
AcoI	YGGCCR	2 cut(s)	1393, 1788
AcsI	RAATTY	3 cut(s)	288, 1942, 2268
AcuI	CTGAAG	1 cut(s)	1950
AcyI	GRCGYC	1 cut(s)	519
AdeI	CACNNNGTG	1 cut(s)	586
AfeI	AGCGCT	1 cut(s)	1705
AfiI	CCNNNNNNNGG	6 cut(s)	202, 345, 778, 804, 1576, 1738
AflII	CTTAAG	2 cut(s)	1514, 2030
AflIII	ACRYGT	3 cut(s)	420, 466, 1458
AgsI	TTSAA	8 cut(s)	125, 224, 362, 689, 1407, 1811, 1886, 1916
AjiI	CACGTC	1 cut(s)	823
AjnI	CCWGG	2 cut(s)	1904, 2041
AluBI	AGCT	8 cut(s)	229, 575, 758, 1052, 1063, 1280, 1306, 1613
AluI	AGCT	8 cut(s)	229, 575, 758, 1052, 1063, 1280, 1306, 1613
Alw26I	GTCTC	5 cut(s)	216, 558, 1078, 1534, 1906
AlwI	GGATC	9 cut(s)	1205, 1218, 1313, 1474, 1770, 1933, 2028, 2221, 2234
Ama87I	CYCGRG	2 cut(s)	448, 2284
Aor51HI	AGCGCT	1 cut(s)	1705
AoxI	GGCC	6 cut(s)	1386, 1393, 1567, 1645, 1788, 2026
ApeKI	GCWGC	7 cut(s)	575, 1303, 1370, 1610, 1859, 1994, 2339
ApoI	RAATTY	3 cut(s)	288, 1942, 2268
AseI	ATTAAT	1 cut(s)	2064
AspLEI	GCGC	9 cut(s)	65, 580, 754, 766, 841, 944, 1706, 1798, 1999
AspS9I	GGNCC	4 cut(s)	353, 1038, 1386, 1948
AsuC2I	CCSGG	3 cut(s)	235, 2285, 2286
AsuHPI	GGTGA	4 cut(s)	677, 1012, 2083, 2339
AvaI	CYCGRG	2 cut(s)	448, 2284
AvaII	GGWCC	3 cut(s)	353, 1038, 1948
AxyI	CCTNAGG	1 cut(s)	1683
BalI	TGGCCA	1 cut(s)	1395
BamHI	GGATCC	2 cut(s)	1210, 2226
BanII	GRGCYC	2 cut(s)	510, 2285
BauI	CACGAG	1 cut(s)	1023
BbvI	GCAGC	7 cut(s)	562, 1315, 1382, 1622, 1846, 2006, 2326
BccI	CCATC	9 cut(s)	177, 587, 1154, 1570, 1732, 1977, 2112, 2158, 2411
BciT130I	CCWGG	2 cut(s)	1906, 2043
BciVI	GTATCC	1 cut(s)	1516
BcnI	CCSGG	3 cut(s)	235, 2285, 2286
BcoDI	GTCTC	5 cut(s)	216, 558, 1078, 1534, 1906
BfaI	CTAG	3 cut(s)	1922, 2147, 2252
BfmI	CTRYAG	1 cut(s)	672
BfoI	RGCGCY	1 cut(s)	1707
BfrI	CTTAAG	2 cut(s)	1514, 2030
BfuAI	ACCTGC	1 cut(s)	1331
BfuI	GTATCC	1 cut(s)	1516
BisI	GCNGC	7 cut(s)	576, 1304, 1371, 1611, 1860, 1995, 2340
BlpI	GCTNAGC	1 cut(s)	767
BlsI	GCNGC	7 cut(s)	577, 1305, 1372, 1612, 1861, 1996, 2341
BmcAI	AGTACT	1 cut(s)	835
Bme1390I	CCNGG	5 cut(s)	235, 1906, 2043, 2285, 2286
Bme18I	GGWCC	3 cut(s)	353, 1038, 1948
BmeT110I	CYCGRG	2 cut(s)	448, 2284
BmgBI	CACGTC	1 cut(s)	823
BmgT120I	GGNCC	4 cut(s)	353, 1038, 1386, 1948
BmiI	GGNNCC	6 cut(s)	323, 509, 1039, 1212, 1387, 2228
BmrFI	CCNGG	5 cut(s)	235, 1906, 2043, 2285, 2286
BmrI	ACTGGG	2 cut(s)	407, 1043
BmsI	GCATC	4 cut(s)	601, 886, 1174, 1981
BmuI	ACTGGG	2 cut(s)	407, 1043
BpmI	CTGGAG	1 cut(s)	1888
Bpu10I	CCTNAGC	1 cut(s)	2118
Bpu1102I	GCTNAGC	1 cut(s)	767
BpuEI	CTTGAG	2 cut(s)	138, 422
BpuMI	CCSGG	3 cut(s)	235, 2285, 2286
BsaAI	YACGTR	1 cut(s)	423
BsaBI	GATNNNNATC	2 cut(s)	142, 483
BsaHI	GRCGYC	1 cut(s)	519
BsaI	GGTCTC	1 cut(s)	216
BsaJI	CCNNGG	7 cut(s)	772, 1335, 1396, 1570, 1733, 1791, 2284
BsaWI	WCCGGW	1 cut(s)	1778
BsaXI	ACNNNNNCTCC	4 cut(s)	492, 522, 555, 585
Bsc4I	CCNNNNNNNGG	6 cut(s)	202, 345, 778, 804, 1576, 1738
Bse118I	RCCGGY	2 cut(s)	1112, 1351
Bse1I	ACTGG	4 cut(s)	402, 1038, 1700, 1942
Bse21I	CCTNAGG	1 cut(s)	1683
Bse3DI	GCAATG	5 cut(s)	865, 906, 981, 1548, 2256
Bse8I	GATNNNNATC	2 cut(s)	142, 483
BseBI	CCWGG	2 cut(s)	1906, 2043
BseDI	CCNNGG	7 cut(s)	772, 1335, 1396, 1570, 1733, 1791, 2284
BseGI	GGATG	7 cut(s)	1146, 1581, 1743, 1993, 2051, 2104, 2169
BseJI	GATNNNNATC	2 cut(s)	142, 483
BseLI	CCNNNNNNNGG	6 cut(s)	202, 345, 778, 804, 1576, 1738
BseMI	GCAATG	5 cut(s)	865, 906, 981, 1548, 2256
BseMII	CTCAG	6 cut(s)	758, 1064, 1260, 1674, 2132, 2270
BseNI	ACTGG	4 cut(s)	402, 1038, 1700, 1942
BseRI	GAGGAG	4 cut(s)	817, 820, 898, 2228
BseXI	GCAGC	7 cut(s)	562, 1315, 1382, 1622, 1846, 2006, 2326
BseYI	CCCAGC	1 cut(s)	638
BsgI	GTGCAG	2 cut(s)	1277, 2196
Bsh1236I	CGCG	3 cut(s)	63, 764, 881
Bsh1285I	CGRYCG	1 cut(s)	16
BshFI	GGCC	6 cut(s)	1388, 1395, 1569, 1647, 1790, 2028
BsiEI	CGRYCG	1 cut(s)	16
BsiHKCI	CYCGRG	2 cut(s)	448, 2284
BsiSI	CCGG	5 cut(s)	235, 1113, 1352, 1779, 2285
BslFI	GGGAC	3 cut(s)	1051, 1664, 2086
BslI	CCNNNNNNNGG	6 cut(s)	202, 345, 778, 804, 1576, 1738
BsmAI	GTCTC	5 cut(s)	216, 558, 1078, 1534, 1906
BsmBI	CGTCTC	1 cut(s)	1078
BsmFI	GGGAC	3 cut(s)	1051, 1664, 2086
BsmI	GAATGC	6 cut(s)	132, 631, 721, 1187, 1515, 1543
BsnI	GGCC	6 cut(s)	1388, 1395, 1569, 1647, 1790, 2028
Bso31I	GGTCTC	1 cut(s)	216
BsoBI	CYCGRG	2 cut(s)	448, 2284
Bsp1286I	GDGCHC	2 cut(s)	510, 2285
Bsp1407I	TGTACA	1 cut(s)	1965
Bsp1720I	GCTNAGC	1 cut(s)	767
Bsp19I	CCATGG	2 cut(s)	1335, 1396
BspACI	CCGC	5 cut(s)	12, 701, 734, 1519, 2317
BspANI	GGCC	6 cut(s)	1388, 1395, 1569, 1647, 1790, 2028
BspCNI	CTCAG	6 cut(s)	759, 1065, 1259, 1675, 2131, 2271
BspFNI	CGCG	3 cut(s)	63, 764, 881
BspLI	GGNNCC	6 cut(s)	323, 509, 1039, 1212, 1387, 2228
BspMAI	CTGCAG	1 cut(s)	676
BspMI	ACCTGC	1 cut(s)	1331
BspPI	GGATC	9 cut(s)	1205, 1218, 1313, 1474, 1770, 1933, 2028, 2221, 2234
BspTI	CTTAAG	2 cut(s)	1514, 2030
BspTNI	GGTCTC	1 cut(s)	216
BsrBI	CCGCTC	1 cut(s)	701
BsrDI	GCAATG	5 cut(s)	865, 906, 981, 1548, 2256
BsrFI	RCCGGY	2 cut(s)	1112, 1351
BsrGI	TGTACA	1 cut(s)	1965
BsrI	ACTGG	4 cut(s)	402, 1038, 1700, 1942
BssAI	RCCGGY	2 cut(s)	1112, 1351
BssECI	CCNNGG	7 cut(s)	772, 1335, 1396, 1570, 1733, 1791, 2284
BssNI	GRCGYC	1 cut(s)	519
BssSI	CACGAG	1 cut(s)	1023
BssT1I	CCWWGG	5 cut(s)	772, 1335, 1396, 1570, 1733
Bst2BI	CACGAG	1 cut(s)	1023
Bst2UI	CCWGG	2 cut(s)	1906, 2043
Bst6I	CTCTTC	4 cut(s)	93, 219, 2030, 2205
BstACI	GRCGYC	1 cut(s)	519
BstAFI	CTTAAG	2 cut(s)	1514, 2030
BstAPI	GCANNNNNTGC	1 cut(s)	1856
BstAUI	TGTACA	1 cut(s)	1965
BstBAI	YACGTR	1 cut(s)	423
BstDEI	CTNAG	7 cut(s)	767, 830, 1073, 1246, 1683, 2118, 2279
BstDSI	CCRYGG	2 cut(s)	1335, 1396
BstF5I	GGATG	7 cut(s)	1146, 1581, 1743, 1993, 2051, 2104, 2169
BstFNI	CGCG	3 cut(s)	63, 764, 881
BstH2I	RGCGCY	1 cut(s)	1707
BstHHI	GCGC	9 cut(s)	65, 580, 754, 766, 841, 944, 1706, 1798, 1999
BstMAI	GTCTC	5 cut(s)	216, 558, 1078, 1534, 1906
BstMCI	CGRYCG	1 cut(s)	16
BstNI	CCWGG	2 cut(s)	1906, 2043
BstNSI	RCATGY	8 cut(s)	391, 447, 470, 494, 1462, 1819, 1866, 2003
BstSCI	CCNGG	5 cut(s)	233, 1904, 2041, 2283, 2284
BstSFI	CTRYAG	1 cut(s)	672
BstUI	CGCG	3 cut(s)	63, 764, 881
BstV1I	GCAGC	7 cut(s)	562, 1315, 1382, 1622, 1846, 2006, 2326
BstX2I	RGATCY	5 cut(s)	1210, 1479, 1762, 1925, 2226
BstYI	RGATCY	5 cut(s)	1210, 1479, 1762, 1925, 2226
Bsu36I	CCTNAGG	1 cut(s)	1683
BsuI	GTATCC	1 cut(s)	1516
BsuRI	GGCC	6 cut(s)	1388, 1395, 1569, 1647, 1790, 2028
BtgI	CCRYGG	2 cut(s)	1335, 1396
BtgZI	GCGATG	1 cut(s)	947
BtrI	CACGTC	1 cut(s)	823
BtsCI	GGATG	7 cut(s)	1146, 1581, 1743, 1993, 2051, 2104, 2169
BtsI	GCAGTG	3 cut(s)	91, 531, 669
BtsIMutI	CAGTG	7 cut(s)	91, 531, 589, 669, 1031, 1693, 2419
BveI	ACCTGC	1 cut(s)	1331
CfoI	GCGC	9 cut(s)	65, 580, 754, 766, 841, 944, 1706, 1798, 1999
Cfr10I	RCCGGY	2 cut(s)	1112, 1351
Cfr13I	GGNCC	4 cut(s)	353, 1038, 1386, 1948
Cfr9I	CCCGGG	1 cut(s)	2284
CpoI	CGGWCCG	1 cut(s)	353
CspI	CGGWCCG	1 cut(s)	353
DdeI	CTNAG	7 cut(s)	767, 830, 1073, 1246, 1683, 2118, 2279
DraI	TTTAAA	1 cut(s)	1125
DraIII	CACNNNGTG	1 cut(s)	586
EaeI	YGGCCR	2 cut(s)	1393, 1788
Eam1104I	CTCTTC	4 cut(s)	93, 219, 2030, 2205
EarI	CTCTTC	4 cut(s)	93, 219, 2030, 2205
Eco130I	CCWWGG	5 cut(s)	772, 1335, 1396, 1570, 1733
Eco147I	AGGCCT	1 cut(s)	2028
Eco24I	GRGCYC	2 cut(s)	510, 2285
Eco31I	GGTCTC	1 cut(s)	216
Eco47I	GGWCC	3 cut(s)	353, 1038, 1948
Eco47III	AGCGCT	1 cut(s)	1705
Eco57I	CTGAAG	1 cut(s)	1950
Eco81I	CCTNAGG	1 cut(s)	1683
Eco88I	CYCGRG	2 cut(s)	448, 2284
EcoO109I	RGGNCCY	1 cut(s)	1386
EcoRI	GAATTC	1 cut(s)	2268
EcoRII	CCWGG	2 cut(s)	1904, 2041
EcoT14I	CCWWGG	5 cut(s)	772, 1335, 1396, 1570, 1733
EcoT22I	ATGCAT	3 cut(s)	346, 1189, 1757
EcoT38I	GRGCYC	2 cut(s)	510, 2285
ErhI	CCWWGG	5 cut(s)	772, 1335, 1396, 1570, 1733
Esp3I	CGTCTC	1 cut(s)	1078
FalI	AAGNNNNNCTT	2 cut(s)	1269, 1301
FaqI	GGGAC	3 cut(s)	1051, 1664, 2086
FauI	CCCGC	3 cut(s)	694, 1512, 2310
FauNDI	CATATG	2 cut(s)	946, 1751
FblI	GTMKAC	1 cut(s)	2151
Fnu4HI	GCNGC	7 cut(s)	576, 1304, 1371, 1611, 1860, 1995, 2340
FokI	GGATG	7 cut(s)	1133, 1588, 1750, 2000, 2058, 2091, 2176
FriOI	GRGCYC	2 cut(s)	510, 2285
Fsp4HI	GCNGC	7 cut(s)	576, 1304, 1371, 1611, 1860, 1995, 2340
FspBI	CTAG	3 cut(s)	1922, 2147, 2252
FspI	TGCGCA	2 cut(s)	579, 753
GlaI	GCGC	9 cut(s)	64, 579, 753, 765, 840, 943, 1705, 1797, 1998
GluI	GCNGC	7 cut(s)	576, 1304, 1371, 1611, 1860, 1995, 2340
GsaI	CCCAGC	1 cut(s)	642
GsuI	CTGGAG	1 cut(s)	1888
HaeII	RGCGCY	1 cut(s)	1707
HaeIII	GGCC	6 cut(s)	1388, 1395, 1569, 1647, 1790, 2028
HapII	CCGG	5 cut(s)	235, 1113, 1352, 1779, 2285
HhaI	GCGC	9 cut(s)	65, 580, 754, 766, 841, 944, 1706, 1798, 1999
Hin1I	GRCGYC	1 cut(s)	519
Hin6I	GCGC	9 cut(s)	63, 578, 752, 764, 839, 942, 1704, 1796, 1997
HinP1I	GCGC	9 cut(s)	63, 578, 752, 764, 839, 942, 1704, 1796, 1997
HindIII	AAGCTT	1 cut(s)	1278
HinfI	GANTC	8 cut(s)	888, 959, 1561, 1711, 2038, 2074, 2111, 2395
HpaII	CCGG	5 cut(s)	235, 1113, 1352, 1779, 2285
HphI	GGTGA	4 cut(s)	677, 1012, 2083, 2339
Hpy166II	GTNNAC	6 cut(s)	420, 813, 877, 1361, 1873, 2152
Hpy188I	TCNGA	6 cut(s)	517, 1049, 1074, 1930, 2006, 2280
Hpy188III	TCNNGA	6 cut(s)	476, 910, 1322, 1715, 2059, 2108
Hpy8I	GTNNAC	6 cut(s)	420, 813, 877, 1361, 1873, 2152
Hpy99I	CGWCG	3 cut(s)	33, 287, 1631
HpyAV	CCTTC	3 cut(s)	772, 1925, 2011
HpyCH4IV	ACGT	3 cut(s)	422, 519, 822
HpyF3I	CTNAG	7 cut(s)	767, 830, 1073, 1246, 1683, 2118, 2279
HpySE526I	ACGT	3 cut(s)	422, 519, 822
Hsp92I	GRCGYC	1 cut(s)	519
HspAI	GCGC	9 cut(s)	63, 578, 752, 764, 839, 942, 1704, 1796, 1997
KroI	GCCGGC	1 cut(s)	1351
KroNI	GCCGGC	1 cut(s)	1353
LmnI	GCTCC	1 cut(s)	513
Lsp1109I	GCAGC	7 cut(s)	562, 1315, 1382, 1622, 1846, 2006, 2326
LweI	GCATC	4 cut(s)	601, 886, 1174, 1981
MaeI	CTAG	3 cut(s)	1922, 2147, 2252
MaeII	ACGT	3 cut(s)	422, 519, 822
MaeIII	GTNAC	8 cut(s)	104, 665, 791, 1027, 1423, 1633, 2302, 2362
MbiI	CCGCTC	1 cut(s)	701
MboII	GAAGA	9 cut(s)	80, 206, 731, 1489, 1757, 1907, 2047, 2222, 2264
MfeI	CAATTG	1 cut(s)	1407
MflI	RGATCY	5 cut(s)	1210, 1479, 1762, 1925, 2226
MhlI	GDGCHC	2 cut(s)	510, 2285
MlsI	TGGCCA	1 cut(s)	1395
MluNI	TGGCCA	1 cut(s)	1395
MlyI	GAGTC	3 cut(s)	1720, 2047, 2404
MmeI	TCCRAC	1 cut(s)	905
Mox20I	TGGCCA	1 cut(s)	1395
Mph1103I	ATGCAT	3 cut(s)	346, 1189, 1757
MroNI	GCCGGC	1 cut(s)	1351
MscI	TGGCCA	1 cut(s)	1395
MseI	TTAA	7 cut(s)	405, 1107, 1124, 1451, 1515, 2031, 2064
MslI	CAYNNNNRTG	4 cut(s)	489, 1098, 1754, 2412
Msp20I	TGGCCA	1 cut(s)	1395
MspA1I	CMGCKG	2 cut(s)	1306, 1613
MspCI	CTTAAG	2 cut(s)	1514, 2030
MspI	CCGG	5 cut(s)	235, 1113, 1352, 1779, 2285
MspR9I	CCNGG	5 cut(s)	235, 1906, 2043, 2285, 2286
MunI	CAATTG	1 cut(s)	1407
Mva1269I	GAATGC	6 cut(s)	132, 631, 721, 1187, 1515, 1543
MvaI	CCWGG	2 cut(s)	1906, 2043
MvnI	CGCG	3 cut(s)	63, 764, 881
NaeI	GCCGGC	1 cut(s)	1353
NciI	CCSGG	3 cut(s)	235, 2285, 2286
NcoI	CCATGG	2 cut(s)	1335, 1396
NdeI	CATATG	2 cut(s)	946, 1751
NgoMIV	GCCGGC	1 cut(s)	1351
NlaIV	GGNNCC	6 cut(s)	323, 509, 1039, 1212, 1387, 2228
NmeAIII	GCCGAG	2 cut(s)	299, 1816
NmuCI	GTSAC	2 cut(s)	665, 1633
NsbI	TGCGCA	2 cut(s)	579, 753
NsiI	ATGCAT	3 cut(s)	346, 1189, 1757
NspI	RCATGY	8 cut(s)	391, 447, 470, 494, 1462, 1819, 1866, 2003
PaeI	GCATGC	3 cut(s)	391, 447, 1819
PaqCI	CACCTGC	1 cut(s)	1331
PceI	AGGCCT	1 cut(s)	2028
PciI	ACATGT	2 cut(s)	466, 1458
PctI	GAATGC	6 cut(s)	132, 631, 721, 1187, 1515, 1543
PdiI	GCCGGC	1 cut(s)	1353
PfeI	GAWTC	5 cut(s)	888, 959, 1561, 2074, 2111
PfoI	TCCNGGA	2 cut(s)	1904, 2041
PkrI	GCNGC	7 cut(s)	577, 1305, 1372, 1612, 1861, 1996, 2341
PleI	GAGTC	3 cut(s)	1719, 2046, 2403
PpsI	GAGTC	3 cut(s)	1719, 2046, 2403
Ppu21I	YACGTR	1 cut(s)	423
PscI	ACATGT	2 cut(s)	466, 1458
PshBI	ATTAAT	1 cut(s)	2064
PsiI	TTATAA	1 cut(s)	182
Psp6I	CCWGG	2 cut(s)	1904, 2041
PspFI	CCCAGC	1 cut(s)	638
PspGI	CCWGG	2 cut(s)	1904, 2041
PspN4I	GGNNCC	6 cut(s)	323, 509, 1039, 1212, 1387, 2228
PspPI	GGNCC	4 cut(s)	353, 1038, 1386, 1948
PstI	CTGCAG	1 cut(s)	676
PsuI	RGATCY	5 cut(s)	1210, 1479, 1762, 1925, 2226
PvuII	CAGCTG	2 cut(s)	1306, 1613
RseI	CAYNNNNRTG	4 cut(s)	489, 1098, 1754, 2412
Rsr2I	CGGWCCG	1 cut(s)	353
RsrII	CGGWCCG	1 cut(s)	353
SaqAI	TTAA	7 cut(s)	405, 1107, 1124, 1451, 1515, 2031, 2064
SatI	GCNGC	7 cut(s)	576, 1304, 1371, 1611, 1860, 1995, 2340
Sau96I	GGNCC	4 cut(s)	353, 1038, 1386, 1948
ScaI	AGTACT	1 cut(s)	835
SchI	GAGTC	3 cut(s)	1720, 2047, 2404
ScrFI	CCNGG	5 cut(s)	235, 1906, 2043, 2285, 2286
SduI	GDGCHC	2 cut(s)	510, 2285
SfaNI	GCATC	4 cut(s)	601, 886, 1174, 1981
SfcI	CTRYAG	1 cut(s)	672
SinI	GGWCC	3 cut(s)	353, 1038, 1948
SmaI	CCCGGG	1 cut(s)	2286
SmiI	ATTTAAAT	1 cut(s)	1125
SmiMI	CAYNNNNRTG	4 cut(s)	489, 1098, 1754, 2412
SmlI	CTYRAG	4 cut(s)	153, 437, 1514, 2030
SmoI	CTYRAG	4 cut(s)	153, 437, 1514, 2030
SphI	GCATGC	3 cut(s)	391, 447, 1819
SrfI	GCCCGGGC	1 cut(s)	2286
SseBI	AGGCCT	1 cut(s)	2028
SsiI	CCGC	5 cut(s)	12, 701, 734, 1519, 2317
SspI	AATATT	1 cut(s)	1882
SspMI	CTAG	3 cut(s)	1922, 2147, 2252
StuI	AGGCCT	1 cut(s)	2028
StyD4I	CCNGG	5 cut(s)	233, 1904, 2041, 2283, 2284
StyI	CCWWGG	5 cut(s)	772, 1335, 1396, 1570, 1733
SwaI	ATTTAAAT	1 cut(s)	1125
TaiI	ACGT	3 cut(s)	425, 522, 825
TaqI	TCGA	8 cut(s)	136, 201, 282, 393, 1466, 1503, 1837, 2058
TatI	WGTACW	6 cut(s)	378, 417, 833, 1090, 1461, 1965
TfiI	GAWTC	5 cut(s)	888, 959, 1561, 2074, 2111
Tru1I	TTAA	7 cut(s)	405, 1107, 1124, 1451, 1515, 2031, 2064
Tru9I	TTAA	7 cut(s)	405, 1107, 1124, 1451, 1515, 2031, 2064
TscAI	CASTG	7 cut(s)	98, 538, 589, 676, 1038, 1700, 2419
TseFI	GTSAC	2 cut(s)	665, 1633
TseI	GCWGC	7 cut(s)	575, 1303, 1370, 1610, 1859, 1994, 2339
Tsp45I	GTSAC	2 cut(s)	665, 1633
TspGWI	ACGGA	2 cut(s)	366, 2280
TspMI	CCCGGG	1 cut(s)	2284
TspRI	CASTG	7 cut(s)	98, 538, 589, 676, 1038, 1700, 2419
Vha464I	CTTAAG	2 cut(s)	1514, 2030
VpaK11BI	GGWCC	3 cut(s)	353, 1038, 1948
VspI	ATTAAT	1 cut(s)	2064
XapI	RAATTY	3 cut(s)	288, 1942, 2268
XceI	RCATGY	8 cut(s)	391, 447, 470, 494, 1462, 1819, 1866, 2003
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2049
XmaI	CCCGGG	1 cut(s)	2284
XmiI	GTMKAC	1 cut(s)	2151
XspI	CTAG	3 cut(s)	1922, 2147, 2252
ZraI	GACGTC	1 cut(s)	520
ZrmI	AGTACT	1 cut(s)	835
Zsp2I	ATGCAT	3 cut(s)	346, 1189, 1757

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.