Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0011260

Physical Location & Seq

Genomic Coordinates Forward (+)

68362477 .. 68364973

Gene Structure 2497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005535

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2409 bp

ATGTTATGGTGCGGTCGCCAACTCCCTCGTCGCCATGTTATTGACCAATTCACAATTCTACGCGCCTTTTCATCAAACCCTCTTCACTACTACTGTAACTACACAAATCTCCTTGAAGCCTGCATTGGATCTAAATCTCTCGCTCAAGCCAAGATAATCCATCAACTTGTTATAAAAGACAATACCCAGATCGAGGACAGGTCTCTTGTACTTGAAAAACTAGCCCGGCTCTACTTGACCTGTAATCAAGTTGAGGTCGCACGCCGAGTGTTCGACGAAATTCCCCAACCAAATGTTATTATTTGGAACCTATTGATAAGAGCCTATGCATGGAACGAACCGTTTGAACGAGCCATTGAGTTGTACTATGGCATGCTCGAACTGGGCGTTAAACCAAGCAAGTACACGTACCCTTTTGTTCTCAAGGCATGCTCGGGTTTGCAGGCACTACATGTTGGTCAAGATATTCATCAACATGCGAAACGACTTGGGCTCGACTCTGACGTCTATGTTTGTACTGCTTTGATTGATTTGTACGCAAAATGTGGAGACTTGGTAGCTGCGCAGAGTGTGTTTGATGGTATGTTGTATAAAGATGTTGTGGCGTGGAATGCTATGATTGCTGGGTTTTCGCTTCATGGTCTTTATGGTGACACTGCAGAGTTGCTGGTTCAAATGCAGAGAGCGGGAACTGCCCCGAATGCCTCTACCATTGTTGCGGTTCTCCCCACAGTTGCGCAAGCTAATGCGCTGAGCCAAGGGAAGGCAATACATGGTTACTCCATGAGGAGGAGGTTTAGTGATGACGTGGTACTTAGTACTGCGCTTTTGGATATGTATGCTAAATGTCAGTGCATAGTTTACGCGAGGAGAATCTTTGATGCAATGAGTGTCAGGAATGAGGTTTGTTGGAGTGCGATGCTAGGCGCATATGTTGGCTGCGATTCCATGAGAGAGGCAATGTCATTGTTTGATGAAATGGTGGTGAAAGATATAAGAAAACTGACACGAGTTACACTGGGGAGCATACTCCGAGCTTGCACAAAGCTAACTGATCTGAGTAGAGGGAGACGAGTACATTGTTATGCAATTAAAGCCGGTTTTGATTTAAATACAATGGTGGGCAACACCATCCTTTCTATGTATGCAAAGTGTGGGATTATAGATGATGCATTCAGGTTATTTGATATAATGGATCCAAAAGACACGGTTTCTTATGGTGCTATCATCTCAGGTTGTGTGCAGAATGGTTATGCAAAGGAAGCTTTGCTTATATTCCACCAAATGCAGTTGTCTGGGATTGATCCAGATTTGGCAACCATGGCAGGTGTTTTGCCGGCTTGTTCACATTTGGCAGCCCTGCAACATGGGGCCTGTGGCCATGGTTATTCAATTGTTCATCGCTTTGCTACAGACACCTCAATTTGTAATGCCTTAATAGACATGTACTCGAAATGTGGGAAGATCCATATAGGCAGGCAAGTATTCGACAGAATGCTTAAGCGGGATACTGTCTCATGGAATGCAATGATAGTTGGTTATGGGATTCATGGCCTTGGGATGGAAGCAATTTCACAGTTCCACAATATGCAGGCAGCTGGAATAAAGCCCGACGATGTGACTTTCATTGGCCTCTTATCTGCTTGCAGTCATTCGGGGCTTGTCACTGAAGGAAAACACTGGTTTAGTGCTATGAGTCAAGATTTCAGCATAACCCCAAGGATGGAACACTACATATGCATGGTGGATCTTCTTGGCCGAACCGGACTGTTGGCCGAGGCGCACAGTTTCATTCAAAGCATGCCATTTGAGGCTGATGTTCGAGTATGGAGTGCACTACTTGCTGCATGTAGGGTTCACAACAATACTAAACTTGGGGAAGAAGTGTCCAGGAAAGTTCAAGGGCTAGGATCTGAAGGTACCGGAAATTTGGTCCTCTTATCTAATATGTACAGTTCTATTGGGAGATGGGATGATGCAGCGCATGTCAGAATTAAACAGAAGGATCAAGGCCTTAAGAAGAGTCCAGGATGTAGTTGGGTCGAGATTAATGGGGTGATTCATGGATTTCTCGGTGGAGATCAGTCCCATCCTGAATCGGCTCAGATACATGAAAAATTAGAGGAACTGCTAGTAGACATGAAAAGGATGGGATATTGTGCAGAAAATAGTTTTGTTCTCCAAGATGTTGAGGAGGAGGAGAAAGAAAGGATCCTCCTTTATCATAGTGAAAAACTAGCCATTGCTTATGGAATTCTTCATCTGAGCCCGGGGAAACCCATTTTTGTTACTAAAAATCTGCGGGTCTGTGTGATGGAAATTGCAGTTGTGCTGACTTTTGGTGAAGAAGAGAATGCATGGGTGTATTCAATGCCGTCCCTGCCTCTTCGACTATATGATATCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

803

Amino Acids

89.29

Weight (kDa)

6.63

Isoelectric Point (pI)

41.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	97 - 144	1.4e-09	PPR repeat family
PPR_2	PF13041	401 - 448	1.8e-07	PPR repeat family
PPR	PF01535	404 - 434	7.6e-06	PPR repeat
PPR_2	PF13041	502 - 550	1.3e-09	PPR repeat family
E_motif	PF20431	620 - 682	1.3e-16	E motif
Eplus_motif	PF20430	687 - 711	1.9e-07	E+ motif
DYW_deaminase	PF14432	718 - 771	8.9e-16	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16610
fragaria_vesca	FvH4_5g18140 FvH4_5g18140
malus_domestica	MD14G1243800.v1.1
prunus_persica	Prupe.5G241400_v2.0.a1 Prupe.5G241400_v2.0.a1
pyrus_communis	pycom14g20490
rosa_chinensis	RchiOBHm_Chr7g0177471
rosa_laevigata	RLG00000005535
rosa_multiflora	Rmu_co8313469.1_g000001 Rmu_sc0036713.1_g000001 Rmu_sc0036714.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275850
rosa_rugosa	Rorug06G0406200 Rorug06G0406300
rosa_samantha	Rh7AG005800 Rh7BG005700 Rh7CG006100 Rh7DG005600
rosa_wichuraiana	Rw7G000470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	173
AarI	CACCTGC	1 cut(s)	1316
AasI	GACNNNNNNGTC	1 cut(s)	503
AatII	GACGTC	1 cut(s)	507
Acc16I	TGCGCA	2 cut(s)	564, 738
Acc36I	ACCTGC	1 cut(s)	1316
Acc65I	GGTACC	1 cut(s)	1919
AccB1I	GGYRCC	1 cut(s)	1919
AccBSI	CCGCTC	1 cut(s)	686
AccI	GTMKAC	1 cut(s)	2136
AccII	CGCG	2 cut(s)	63, 866
AciI	CCGC	5 cut(s)	12, 686, 719, 1504, 2302
AcoI	YGGCCR	3 cut(s)	1378, 1756, 1773
AcsI	RAATTY	3 cut(s)	279, 1927, 2253
AcuI	CTGAAG	2 cut(s)	1689, 1935
AcyI	GRCGYC	1 cut(s)	504
AfiI	CCNNNNNNNGG	6 cut(s)	193, 330, 763, 789, 1561, 1723
AflII	CTTAAG	2 cut(s)	1499, 2015
AflIII	ACRYGT	3 cut(s)	405, 451, 1443
AgsI	TTSAA	8 cut(s)	116, 215, 347, 674, 1392, 1796, 1901, 2370
AjiI	CACGTC	1 cut(s)	808
AjnI	CCWGG	2 cut(s)	1889, 2026
AjuI	GAANNNNNNNTTGG	4 cut(s)	39, 71, 108, 140
AluBI	AGCT	6 cut(s)	560, 743, 1037, 1048, 1265, 1598
AluI	AGCT	6 cut(s)	560, 743, 1037, 1048, 1265, 1598
Alw21I	GWGCWC	1 cut(s)	1837
Alw26I	GTCTC	4 cut(s)	207, 543, 1063, 1519
Alw44I	GTGCAC	1 cut(s)	1833
Ama87I	CYCGRG	2 cut(s)	433, 2269
AoxI	GGCC	7 cut(s)	1371, 1378, 1552, 1630, 1756, 1773, 2011
ApaLI	GTGCAC	1 cut(s)	1833
ApeKI	GCWGC	6 cut(s)	560, 939, 1355, 1595, 1844, 1979
ApoI	RAATTY	3 cut(s)	279, 1927, 2253
AseI	ATTAAT	1 cut(s)	2049
Asp718I	GGTACC	1 cut(s)	1919
AspLEI	GCGC	8 cut(s)	65, 565, 739, 751, 826, 929, 1783, 1984
AspS9I	GGNCC	2 cut(s)	1371, 1933
AsuC2I	CCSGG	3 cut(s)	226, 2270, 2271
AsuHPI	GGTGA	4 cut(s)	662, 997, 2068, 2354
AvaI	CYCGRG	2 cut(s)	433, 2269
AvaII	GGWCC	1 cut(s)	1933
BaeGI	GKGCMC	1 cut(s)	1837
BalI	TGGCCA	1 cut(s)	1380
BamHI	GGATCC	2 cut(s)	1195, 2211
BanI	GGYRCC	1 cut(s)	1919
BanII	GRGCYC	2 cut(s)	495, 2270
BauI	CACGAG	1 cut(s)	1008
Bbv12I	GWGCWC	1 cut(s)	1837
BbvI	GCAGC	6 cut(s)	547, 926, 1367, 1607, 1831, 1991
BccI	CCATC	9 cut(s)	168, 572, 1139, 1555, 1717, 1962, 2097, 2143, 2308
BceAI	ACGGC	1 cut(s)	2359
BciT130I	CCWGG	2 cut(s)	1891, 2028
BciVI	GTATCC	1 cut(s)	1501
BcnI	CCSGG	3 cut(s)	226, 2270, 2271
BcoDI	GTCTC	4 cut(s)	207, 543, 1063, 1519
BfaI	CTAG	5 cut(s)	221, 923, 1907, 2132, 2237
BfmI	CTRYAG	2 cut(s)	657, 1410
BfrI	CTTAAG	2 cut(s)	1499, 2015
BfuAI	ACCTGC	1 cut(s)	1316
BfuI	GTATCC	1 cut(s)	1501
BisI	GCNGC	6 cut(s)	561, 940, 1356, 1596, 1845, 1980
BlpI	GCTNAGC	1 cut(s)	752
BlsI	GCNGC	6 cut(s)	562, 941, 1357, 1597, 1846, 1981
BmcAI	AGTACT	1 cut(s)	820
Bme1390I	CCNGG	5 cut(s)	226, 1891, 2028, 2270, 2271
Bme18I	GGWCC	1 cut(s)	1933
BmeT110I	CYCGRG	2 cut(s)	433, 2269
BmgBI	CACGTC	1 cut(s)	808
BmgT120I	GGNCC	2 cut(s)	1371, 1933
BmiI	GGNNCC	5 cut(s)	308, 1197, 1372, 1921, 2213
BmrFI	CCNGG	5 cut(s)	226, 1891, 2028, 2270, 2271
BmrI	ACTGGG	2 cut(s)	392, 1028
BmsI	GCATC	4 cut(s)	871, 909, 1159, 1966
BmuI	ACTGGG	2 cut(s)	392, 1028
Bpu1102I	GCTNAGC	1 cut(s)	752
BpuEI	CTTGAG	2 cut(s)	129, 407
BpuMI	CCSGG	3 cut(s)	226, 2270, 2271
BsaAI	YACGTR	1 cut(s)	408
BsaBI	GATNNNNATC	2 cut(s)	133, 468
BsaHI	GRCGYC	1 cut(s)	504
BsaI	GGTCTC	1 cut(s)	207
BsaJI	CCNNGG	8 cut(s)	757, 1320, 1381, 1555, 1718, 1776, 2269, 2270
BsaWI	WCCGGW	2 cut(s)	1763, 1922
BsaXI	ACNNNNNCTCC	4 cut(s)	540, 570, 784, 814
Bsc4I	CCNNNNNNNGG	6 cut(s)	193, 330, 763, 789, 1561, 1723
Bse118I	RCCGGY	2 cut(s)	1097, 1336
Bse1I	ACTGG	3 cut(s)	387, 1023, 1685
Bse3DI	GCAATG	4 cut(s)	891, 966, 1533, 2241
Bse8I	GATNNNNATC	2 cut(s)	133, 468
BseBI	CCWGG	2 cut(s)	1891, 2028
BseDI	CCNNGG	8 cut(s)	757, 1320, 1381, 1555, 1718, 1776, 2269, 2270
BseGI	GGATG	7 cut(s)	1131, 1566, 1728, 1978, 2036, 2089, 2154
BseJI	GATNNNNATC	2 cut(s)	133, 468
BseLI	CCNNNNNNNGG	6 cut(s)	193, 330, 763, 789, 1561, 1723
BseMI	GCAATG	4 cut(s)	891, 966, 1533, 2241
BseMII	CTCAG	5 cut(s)	743, 1049, 1245, 2117, 2255
BseNI	ACTGG	3 cut(s)	387, 1023, 1685
BseRI	GAGGAG	6 cut(s)	802, 805, 883, 2207, 2210, 2213
BseSI	GKGCMC	1 cut(s)	1837
BseXI	GCAGC	6 cut(s)	547, 926, 1367, 1607, 1831, 1991
BseYI	CCCAGC	1 cut(s)	623
BsgI	GTGCAG	2 cut(s)	1262, 2181
Bsh1236I	CGCG	2 cut(s)	63, 866
Bsh1285I	CGRYCG	1 cut(s)	16
BshFI	GGCC	7 cut(s)	1373, 1380, 1554, 1632, 1758, 1775, 2013
BshNI	GGYRCC	1 cut(s)	1919
BsiEI	CGRYCG	1 cut(s)	16
BsiHKAI	GWGCWC	1 cut(s)	1837
BsiHKCI	CYCGRG	2 cut(s)	433, 2269
BsiSI	CCGG	6 cut(s)	226, 1098, 1337, 1764, 1923, 2270
BslFI	GGGAC	2 cut(s)	2071, 2362
BslI	CCNNNNNNNGG	6 cut(s)	193, 330, 763, 789, 1561, 1723
BsmAI	GTCTC	4 cut(s)	207, 543, 1063, 1519
BsmBI	CGTCTC	1 cut(s)	1063
BsmFI	GGGAC	2 cut(s)	2071, 2362
BsmI	GAATGC	6 cut(s)	616, 706, 1172, 1500, 1528, 2359
BsnI	GGCC	7 cut(s)	1373, 1380, 1554, 1632, 1758, 1775, 2013
Bso31I	GGTCTC	1 cut(s)	207
BsoBI	CYCGRG	2 cut(s)	433, 2269
Bsp1286I	GDGCHC	3 cut(s)	495, 1837, 2270
Bsp1407I	TGTACA	1 cut(s)	1950
Bsp1720I	GCTNAGC	1 cut(s)	752
Bsp19I	CCATGG	2 cut(s)	1320, 1381
BspACI	CCGC	5 cut(s)	12, 686, 719, 1504, 2302
BspANI	GGCC	7 cut(s)	1373, 1380, 1554, 1632, 1758, 1775, 2013
BspCNI	CTCAG	5 cut(s)	744, 1050, 1244, 2116, 2256
BspFNI	CGCG	2 cut(s)	63, 866
BspLI	GGNNCC	5 cut(s)	308, 1197, 1372, 1921, 2213
BspMAI	CTGCAG	1 cut(s)	661
BspMI	ACCTGC	1 cut(s)	1316
BspT107I	GGYRCC	1 cut(s)	1919
BspTI	CTTAAG	2 cut(s)	1499, 2015
BspTNI	GGTCTC	1 cut(s)	207
BsrBI	CCGCTC	1 cut(s)	686
BsrDI	GCAATG	4 cut(s)	891, 966, 1533, 2241
BsrFI	RCCGGY	2 cut(s)	1097, 1336
BsrGI	TGTACA	1 cut(s)	1950
BsrI	ACTGG	3 cut(s)	387, 1023, 1685
BssAI	RCCGGY	2 cut(s)	1097, 1336
BssECI	CCNNGG	8 cut(s)	757, 1320, 1381, 1555, 1718, 1776, 2269, 2270
BssNI	GRCGYC	1 cut(s)	504
BssSI	CACGAG	1 cut(s)	1008
BssT1I	CCWWGG	5 cut(s)	757, 1320, 1381, 1555, 1718
Bst2BI	CACGAG	1 cut(s)	1008
Bst2UI	CCWGG	2 cut(s)	1891, 2028
Bst4CI	ACNGT	9 cut(s)	95, 342, 733, 1210, 1513, 1578, 1770, 1787, 1955
Bst6I	CTCTTC	4 cut(s)	87, 2015, 2343, 2391
BstACI	GRCGYC	1 cut(s)	504
BstAFI	CTTAAG	2 cut(s)	1499, 2015
BstAPI	GCANNNNNTGC	1 cut(s)	1841
BstAUI	TGTACA	1 cut(s)	1950
BstBAI	YACGTR	1 cut(s)	408
BstDEI	CTNAG	6 cut(s)	752, 815, 1058, 1231, 2103, 2264
BstDSI	CCRYGG	2 cut(s)	1320, 1381
BstF5I	GGATG	7 cut(s)	1131, 1566, 1728, 1978, 2036, 2089, 2154
BstFNI	CGCG	2 cut(s)	63, 866
BstHHI	GCGC	8 cut(s)	65, 565, 739, 751, 826, 929, 1783, 1984
BstMAI	GTCTC	4 cut(s)	207, 543, 1063, 1519
BstMCI	CGRYCG	1 cut(s)	16
BstMWI	GCNNNNNNNGC	9 cut(s)	611, 620, 692, 701, 1094, 1262, 1322, 1841, 2380
BstNI	CCWGG	2 cut(s)	1891, 2028
BstNSI	RCATGY	8 cut(s)	376, 432, 455, 479, 1447, 1804, 1851, 1988
BstSCI	CCNGG	5 cut(s)	224, 1889, 2026, 2268, 2269
BstSFI	CTRYAG	2 cut(s)	657, 1410
BstSLI	GKGCMC	1 cut(s)	1837
BstUI	CGCG	2 cut(s)	63, 866
BstV1I	GCAGC	6 cut(s)	547, 926, 1367, 1607, 1831, 1991
BstX2I	RGATCY	6 cut(s)	128, 1195, 1464, 1747, 1910, 2211
BstYI	RGATCY	6 cut(s)	128, 1195, 1464, 1747, 1910, 2211
BsuI	GTATCC	1 cut(s)	1501
BsuRI	GGCC	7 cut(s)	1373, 1380, 1554, 1632, 1758, 1775, 2013
BtgI	CCRYGG	2 cut(s)	1320, 1381
BtgZI	GCGATG	2 cut(s)	932, 1385
BtrI	CACGTC	1 cut(s)	808
BtsCI	GGATG	7 cut(s)	1131, 1566, 1728, 1978, 2036, 2089, 2154
BtsI	GCAGTG	1 cut(s)	654
BtsIMutI	CAGTG	5 cut(s)	654, 857, 1016, 1665, 1678
BveI	ACCTGC	1 cut(s)	1316
CfoI	GCGC	8 cut(s)	65, 565, 739, 751, 826, 929, 1783, 1984
Cfr10I	RCCGGY	2 cut(s)	1097, 1336
Cfr13I	GGNCC	2 cut(s)	1371, 1933
Cfr9I	CCCGGG	1 cut(s)	2269
DdeI	CTNAG	6 cut(s)	752, 815, 1058, 1231, 2103, 2264
DraI	TTTAAA	1 cut(s)	1110
DrdI	GACNNNNNNGTC	1 cut(s)	503
DseDI	GACNNNNNNGTC	1 cut(s)	503
EaeI	YGGCCR	3 cut(s)	1378, 1756, 1773
Eam1104I	CTCTTC	4 cut(s)	87, 2015, 2343, 2391
EarI	CTCTTC	4 cut(s)	87, 2015, 2343, 2391
Eco130I	CCWWGG	5 cut(s)	757, 1320, 1381, 1555, 1718
Eco147I	AGGCCT	1 cut(s)	2013
Eco24I	GRGCYC	2 cut(s)	495, 2270
Eco31I	GGTCTC	1 cut(s)	207
Eco32I	GATATC	1 cut(s)	2401
Eco47I	GGWCC	1 cut(s)	1933
Eco57I	CTGAAG	2 cut(s)	1689, 1935
Eco88I	CYCGRG	2 cut(s)	433, 2269
EcoO109I	RGGNCCY	1 cut(s)	1371
EcoRI	GAATTC	1 cut(s)	2253
EcoRII	CCWGG	2 cut(s)	1889, 2026
EcoRV	GATATC	1 cut(s)	2401
EcoT14I	CCWWGG	5 cut(s)	757, 1320, 1381, 1555, 1718
EcoT22I	ATGCAT	4 cut(s)	331, 1174, 1742, 2359
EcoT38I	GRGCYC	2 cut(s)	495, 2270
ErhI	CCWWGG	5 cut(s)	757, 1320, 1381, 1555, 1718
Esp3I	CGTCTC	1 cut(s)	1063
FalI	AAGNNNNNCTT	2 cut(s)	1254, 1286
FaqI	GGGAC	2 cut(s)	2071, 2362
FauI	CCCGC	3 cut(s)	679, 1497, 2295
FauNDI	CATATG	2 cut(s)	931, 1736
FblI	GTMKAC	1 cut(s)	2136
Fnu4HI	GCNGC	6 cut(s)	561, 940, 1356, 1596, 1845, 1980
FokI	GGATG	7 cut(s)	1118, 1573, 1735, 1985, 2043, 2076, 2161
FriOI	GRGCYC	2 cut(s)	495, 2270
Fsp4HI	GCNGC	6 cut(s)	561, 940, 1356, 1596, 1845, 1980
FspBI	CTAG	5 cut(s)	221, 923, 1907, 2132, 2237
FspI	TGCGCA	2 cut(s)	564, 738
GlaI	GCGC	8 cut(s)	64, 564, 738, 750, 825, 928, 1782, 1983
GluI	GCNGC	6 cut(s)	561, 940, 1356, 1596, 1845, 1980
GsaI	CCCAGC	1 cut(s)	627
HaeIII	GGCC	7 cut(s)	1373, 1380, 1554, 1632, 1758, 1775, 2013
HapII	CCGG	6 cut(s)	226, 1098, 1337, 1764, 1923, 2270
HhaI	GCGC	8 cut(s)	65, 565, 739, 751, 826, 929, 1783, 1984
Hin1I	GRCGYC	1 cut(s)	504
Hin6I	GCGC	8 cut(s)	63, 563, 737, 749, 824, 927, 1781, 1982
HinP1I	GCGC	8 cut(s)	63, 563, 737, 749, 824, 927, 1781, 1982
HindIII	AAGCTT	1 cut(s)	1263
HinfI	GANTC	8 cut(s)	497, 873, 944, 1546, 1696, 2023, 2059, 2096
HpaII	CCGG	6 cut(s)	226, 1098, 1337, 1764, 1923, 2270
HphI	GGTGA	4 cut(s)	662, 997, 2068, 2354
Hpy166II	GTNNAC	6 cut(s)	405, 862, 1346, 1835, 1858, 2137
Hpy188I	TCNGA	7 cut(s)	502, 1034, 1059, 1915, 1991, 2106, 2265
Hpy188III	TCNNGA	6 cut(s)	461, 895, 1307, 1700, 2044, 2093
Hpy8I	GTNNAC	6 cut(s)	405, 862, 1346, 1835, 1858, 2137
Hpy99I	CGWCG	3 cut(s)	33, 278, 1616
HpyAV	CCTTC	4 cut(s)	757, 1664, 1910, 1996
HpyCH4III	ACNGT	9 cut(s)	95, 342, 733, 1210, 1513, 1578, 1770, 1787, 1955
HpyCH4IV	ACGT	3 cut(s)	407, 504, 807
HpyF10VI	GCNNNNNNNGC	9 cut(s)	611, 620, 692, 701, 1094, 1262, 1322, 1841, 2380
HpyF3I	CTNAG	6 cut(s)	752, 815, 1058, 1231, 2103, 2264
HpySE526I	ACGT	3 cut(s)	407, 504, 807
Hsp92I	GRCGYC	1 cut(s)	504
HspAI	GCGC	8 cut(s)	63, 563, 737, 749, 824, 927, 1781, 1982
KpnI	GGTACC	1 cut(s)	1923
KroI	GCCGGC	1 cut(s)	1336
KroNI	GCCGGC	1 cut(s)	1338
LmnI	GCTCC	1 cut(s)	1023
Lsp1109I	GCAGC	6 cut(s)	547, 926, 1367, 1607, 1831, 1991
LweI	GCATC	4 cut(s)	871, 909, 1159, 1966
MaeI	CTAG	5 cut(s)	221, 923, 1907, 2132, 2237
MaeII	ACGT	3 cut(s)	407, 504, 807
MaeIII	GTNAC	7 cut(s)	95, 650, 776, 1012, 1618, 1663, 2287
MbiI	CCGCTC	1 cut(s)	686
MboII	GAAGA	9 cut(s)	74, 1474, 1742, 1892, 2032, 2249, 2357, 2360, 2378
MfeI	CAATTG	1 cut(s)	1392
MflI	RGATCY	6 cut(s)	128, 1195, 1464, 1747, 1910, 2211
MhlI	GDGCHC	3 cut(s)	495, 1837, 2270
MlsI	TGGCCA	1 cut(s)	1380
MluNI	TGGCCA	1 cut(s)	1380
MlyI	GAGTC	3 cut(s)	491, 1705, 2032
MmeI	TCCRAC	1 cut(s)	890
Mox20I	TGGCCA	1 cut(s)	1380
Mph1103I	ATGCAT	4 cut(s)	331, 1174, 1742, 2359
MroNI	GCCGGC	1 cut(s)	1336
MscI	TGGCCA	1 cut(s)	1380
MseI	TTAA	8 cut(s)	390, 1092, 1109, 1436, 1500, 1995, 2016, 2049
MslI	CAYNNNNRTG	3 cut(s)	474, 1083, 1739
Msp20I	TGGCCA	1 cut(s)	1380
MspA1I	CMGCKG	1 cut(s)	1598
MspCI	CTTAAG	2 cut(s)	1499, 2015
MspI	CCGG	6 cut(s)	226, 1098, 1337, 1764, 1923, 2270
MspR9I	CCNGG	5 cut(s)	226, 1891, 2028, 2270, 2271
MunI	CAATTG	1 cut(s)	1392
Mva1269I	GAATGC	6 cut(s)	616, 706, 1172, 1500, 1528, 2359
MvaI	CCWGG	2 cut(s)	1891, 2028
MvnI	CGCG	2 cut(s)	63, 866
MwoI	GCNNNNNNNGC	9 cut(s)	611, 620, 692, 701, 1094, 1262, 1322, 1841, 2380
NaeI	GCCGGC	1 cut(s)	1338
NciI	CCSGG	3 cut(s)	226, 2270, 2271
NcoI	CCATGG	2 cut(s)	1320, 1381
NdeI	CATATG	2 cut(s)	931, 1736
NgoMIV	GCCGGC	1 cut(s)	1336
NlaIV	GGNNCC	5 cut(s)	308, 1197, 1372, 1921, 2213
NmeAIII	GCCGAG	2 cut(s)	290, 1801
NmuCI	GTSAC	3 cut(s)	650, 1618, 1663
NsbI	TGCGCA	2 cut(s)	564, 738
NsiI	ATGCAT	4 cut(s)	331, 1174, 1742, 2359
NspI	RCATGY	8 cut(s)	376, 432, 455, 479, 1447, 1804, 1851, 1988
PaeI	GCATGC	3 cut(s)	376, 432, 1804
PaqCI	CACCTGC	1 cut(s)	1316
PceI	AGGCCT	1 cut(s)	2013
PciI	ACATGT	2 cut(s)	451, 1443
PcsI	WCGNNNNNNNCGW	2 cut(s)	384, 501
PctI	GAATGC	6 cut(s)	616, 706, 1172, 1500, 1528, 2359
PdiI	GCCGGC	1 cut(s)	1338
PfeI	GAWTC	5 cut(s)	873, 944, 1546, 2059, 2096
PfoI	TCCNGGA	2 cut(s)	1889, 2026
PkrI	GCNGC	6 cut(s)	562, 941, 1357, 1597, 1846, 1981
PleI	GAGTC	3 cut(s)	491, 1704, 2031
PpsI	GAGTC	3 cut(s)	491, 1704, 2031
Ppu21I	YACGTR	1 cut(s)	408
PscI	ACATGT	2 cut(s)	451, 1443
PshBI	ATTAAT	1 cut(s)	2049
PsiI	TTATAA	1 cut(s)	173
Psp6I	CCWGG	2 cut(s)	1889, 2026
PspFI	CCCAGC	1 cut(s)	623
PspGI	CCWGG	2 cut(s)	1889, 2026
PspN4I	GGNNCC	5 cut(s)	308, 1197, 1372, 1921, 2213
PspPI	GGNCC	2 cut(s)	1371, 1933
PstI	CTGCAG	1 cut(s)	661
PsuI	RGATCY	6 cut(s)	128, 1195, 1464, 1747, 1910, 2211
PvuII	CAGCTG	1 cut(s)	1598
RseI	CAYNNNNRTG	3 cut(s)	474, 1083, 1739
SaqAI	TTAA	8 cut(s)	390, 1092, 1109, 1436, 1500, 1995, 2016, 2049
SatI	GCNGC	6 cut(s)	561, 940, 1356, 1596, 1845, 1980
Sau96I	GGNCC	2 cut(s)	1371, 1933
ScaI	AGTACT	1 cut(s)	820
SchI	GAGTC	3 cut(s)	491, 1705, 2032
ScrFI	CCNGG	5 cut(s)	226, 1891, 2028, 2270, 2271
SduI	GDGCHC	3 cut(s)	495, 1837, 2270
SfaNI	GCATC	4 cut(s)	871, 909, 1159, 1966
SfcI	CTRYAG	2 cut(s)	657, 1410
SinI	GGWCC	1 cut(s)	1933
SmaI	CCCGGG	1 cut(s)	2271
SmiI	ATTTAAAT	1 cut(s)	1110
SmiMI	CAYNNNNRTG	3 cut(s)	474, 1083, 1739
SmlI	CTYRAG	4 cut(s)	144, 422, 1499, 2015
SmoI	CTYRAG	4 cut(s)	144, 422, 1499, 2015
SphI	GCATGC	3 cut(s)	376, 432, 1804
SseBI	AGGCCT	1 cut(s)	2013
SsiI	CCGC	5 cut(s)	12, 686, 719, 1504, 2302
SspMI	CTAG	5 cut(s)	221, 923, 1907, 2132, 2237
StuI	AGGCCT	1 cut(s)	2013
StyD4I	CCNGG	5 cut(s)	224, 1889, 2026, 2268, 2269
StyI	CCWWGG	5 cut(s)	757, 1320, 1381, 1555, 1718
SwaI	ATTTAAAT	1 cut(s)	1110
TaaI	ACNGT	9 cut(s)	95, 342, 733, 1210, 1513, 1578, 1770, 1787, 1955
TaiI	ACGT	3 cut(s)	410, 507, 810
TaqI	TCGA	9 cut(s)	192, 273, 378, 495, 1451, 1488, 1822, 2043, 2389
TatI	WGTACW	8 cut(s)	208, 363, 402, 515, 818, 1075, 1446, 1950
TfiI	GAWTC	5 cut(s)	873, 944, 1546, 2059, 2096
Tru1I	TTAA	8 cut(s)	390, 1092, 1109, 1436, 1500, 1995, 2016, 2049
Tru9I	TTAA	8 cut(s)	390, 1092, 1109, 1436, 1500, 1995, 2016, 2049
TscAI	CASTG	5 cut(s)	661, 857, 1023, 1672, 1685
TseFI	GTSAC	3 cut(s)	650, 1618, 1663
TseI	GCWGC	6 cut(s)	560, 939, 1355, 1595, 1844, 1979
Tsp45I	GTSAC	3 cut(s)	650, 1618, 1663
TspMI	CCCGGG	1 cut(s)	2269
TspRI	CASTG	5 cut(s)	661, 857, 1023, 1672, 1685
Vha464I	CTTAAG	2 cut(s)	1499, 2015
VneI	GTGCAC	1 cut(s)	1833
VpaK11BI	GGWCC	1 cut(s)	1933
VspI	ATTAAT	1 cut(s)	2049
XapI	RAATTY	3 cut(s)	279, 1927, 2253
XceI	RCATGY	8 cut(s)	376, 432, 455, 479, 1447, 1804, 1851, 1988
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2034
XmaI	CCCGGG	1 cut(s)	2269
XmiI	GTMKAC	1 cut(s)	2136
XspI	CTAG	5 cut(s)	221, 923, 1907, 2132, 2237
ZraI	GACGTC	1 cut(s)	505
ZrmI	AGTACT	1 cut(s)	820
Zsp2I	ATGCAT	4 cut(s)	331, 1174, 1742, 2359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.