Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0011260

Physical Location & Seq

Genomic Coordinates Reverse (-)

400808 .. 403852

Gene Structure 3045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G000470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2436 bp

ATGTTATGGTGCGGTCGCCAACTCCCTCGTCGCCATGTTATCGACCAATTCACAACCCTACGCACTTCATCAAACCCTCTTCACTACTACTGTAACTACACAAATCTCCTTGAAGCCTGCATTCGATCTAAATCTCTCGCTCAAGCCAAGATAATCCATCAACTTGTTATAAAAGACAATACCAATACCCAGATGGAGGACAGGTCTCTTCTACTTGAAAAACTAGCCCGGCTCTACATGGCCTGTAATCAAGTTGAGGTCGCACGCCGAGTGTTCGACGAAATTCCCCAACCAAATGTTATTATTTGGAACCTATTGATAAGAGCCTATGCATGGAACGGACCGTTTGAACGAGCCATTGAGTTGTACTATGGCATGCTCGAACTGGGCGTTAAACCAAGCAAGTACACGTACCCTTTTGTTCTCAAGGCATGCTCGGGTTTGCAGGCACTACATGTTGGTCAAGATATTCATCAACATGCGAAACGACTTGGGCTCGACTCTGACGTCTATGTTTGCACTGCTTTGATTGATTTGTACGCAAAATGTGGGGACTTGGTAGCTGCGCAGAGTGTGTTTGATGGTATGTTGTATAAAGATGTTGTGGCGTGGAATGCTATGATTGCTGGGTTTTCGCTTCATGGTCTTTATGGTGACACTGCAGAGTTGCTGGTTCAAATGCAGAGAGCGGGAACTGCCCCGAATGCCTCTACCATTGTTGCGGTTCTTCCCACAGTGGCGCACGCTACCGCGCTGAGCCAAGGGAAGGCAATACATGGTTACTCCATGAGGAGGAGGTTTAGTGATGACGTGGTACTTAGTACTGCGCTTTTGGATATGTATGCTAAATGTCAGTGCATAGTTTACGCGAGGAGAATCTTTGATGCAATGAGTGTCAGGAATGAGGTTTGTTGGAGTGCGATGATAGGCGCATATGTTGGCTGTGATTCCATGAGAGAGGCAATGTCGTTGTTTGATGAAATAGTGGTGAAAGATGTAAGAAAACTGACACGAGTTACACTGGGGAGCATACTCCGAGCTTGCACAAAGCTAACTGATCTGAGTAGAGGGAGACGAGTACATTGTTATGCAATTAAAGCCGGTTTTGATTTAAATACAATGGTGGGCAACACCATCCTTTCTATGTATGCAAAGTGTGGGATTATAGACGATGCATTCAGGTTATTTGATATAATGGATCCAAAAGACACGGTTTCTTATGGTGCTATCATCTCAGGCTGTGTGCAGAATGGTTATGCAAAGGAAGCTTTGCTTATATTCCACCAAATGCAGTTGTCTGGGATTGATCCAGATTTGGCAACCTTGGCAGGTGTTTTGCCGGCTTGTTCACATTTGGCAGCCCTGCAACATGGGGCCTGTGGCCATGGTTATTCAATTGTTCATGGCTTTGTTACAGACACCTCAATTTGTAATGCTTTAATAGACATGTACTCGAAATGTGGGAAGATCCATATAGGCAGGCAAGTATTCGACAGAATGCTTAAGCGGGATAATGTCTCATGGAATGCAATGATAGTTGGTTATGGGATTCATGGCCTTGGGAAGGAAGCAATTTCACAGTTCCACAATATGCAGGCAGCTGGAATAAAGCCCGATGATGTGACTTTCATTGGCCTCTTATCTGCTTGCAGTCATTCGGGGCTTGTCACTGAAGGAAAACACTGGTTTAGTGCTATGAGACAAGATTTCAGCATAACCCCAAGGATGGAACACTACATATGCATGGTGGATCTTCTTGCCCGAACTGGACTGTTGGCCGAGGCGCATAGTTTCATTCAAAGCATGCCATTTGAGGCTGATGTTCGAGTATGGAGTGCACTACTTGCTGCATGTAGGGTTCACAATAATATTGAACTTGGGGAAGAAGTGTCCAGGAAAGTTCAAGGGCTAGGATCTGAAGGTACCGGAAATTTGGTCCTCTTATCTAATATGTACAGTTCTATTGGGAGATGGGATGATGCAGCGCATGTCAGAATTAAACAGAAGGATCAAGGCCTTAAGAAGAGTCCAGGATGTAGTTGGGTCGAGATTAATGGGGTGATTCATGGATTTCTCGGTGGAGATCAGTCCCATCCTGAATCGGCTCAGATACATGAAAAATTAGAGGAACTGCTAGTAGACATGAAAAGGATGGGATATTGTACAGAAAATAGTTTTGTTCTCCAAGATGTTGAGGAAGAGGAGAAAGAAAGGATCCTCCTTTATCATAGTGAAAAACTAGCCATTGCTTATGGAATTCTTCATCTGAGCCCGGGGAAACCCATTTTTGTTACTAAAAATCTGCGGGTCTGTGGTGATTGCCATGCTGCTATAAAGTTCATCTCTCTTGTTACAAAGAGAGAGATAACCGTAAGAGATGTGAGTCGGTTTCATCATTTCAGTGATGGAAATTGCAGTTGTGCAGACTTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

811

Amino Acids

90.31

Weight (kDa)

7.34

Isoelectric Point (pI)

41.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	98 - 145	2.3e-10	PPR repeat family
PPR_2	PF13041	402 - 449	2.8e-07	PPR repeat family
PPR	PF01535	405 - 435	7.7e-06	PPR repeat
PPR_2	PF13041	504 - 551	1.1e-09	PPR repeat family
E_motif	PF20431	621 - 683	5.5e-18	E motif
Eplus_motif	PF20430	688 - 712	2e-07	E+ motif
DYW_deaminase	PF14432	719 - 811	2e-39	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16610
fragaria_vesca	FvH4_5g18140 FvH4_5g18140
malus_domestica	MD14G1243800.v1.1
prunus_persica	Prupe.5G241400_v2.0.a1 Prupe.5G241400_v2.0.a1
pyrus_communis	pycom14g20490
rosa_chinensis	RchiOBHm_Chr7g0177471
rosa_laevigata	RLG00000005535
rosa_multiflora	Rmu_co8313469.1_g000001 Rmu_sc0036713.1_g000001 Rmu_sc0036714.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275850
rosa_rugosa	Rorug06G0406200 Rorug06G0406300
rosa_samantha	Rh7AG005800 Rh7BG005700 Rh7CG006100 Rh7DG005600
rosa_wichuraiana	Rw7G000470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	170
AarI	CACCTGC	1 cut(s)	1319
AasI	GACNNNNNNGTC	1 cut(s)	506
AatII	GACGTC	1 cut(s)	510
Acc16I	TGCGCA	1 cut(s)	567
Acc36I	ACCTGC	1 cut(s)	1319
Acc65I	GGTACC	1 cut(s)	1922
AccB1I	GGYRCC	1 cut(s)	1922
AccBSI	CCGCTC	1 cut(s)	689
AccI	GTMKAC	1 cut(s)	2139
AccII	CGCG	2 cut(s)	752, 869
AciI	CCGC	6 cut(s)	12, 689, 722, 750, 1507, 2305
AclWI	GGATC	9 cut(s)	1193, 1206, 1301, 1462, 1758, 1921, 2016, 2209, 2222
AcoI	YGGCCR	2 cut(s)	1381, 1776
AcsI	RAATTY	3 cut(s)	282, 1930, 2256
AcuI	CTGAAG	2 cut(s)	1692, 1938
AcyI	GRCGYC	1 cut(s)	507
AfiI	CCNNNNNNNGG	6 cut(s)	196, 333, 766, 792, 1564, 1726
AflII	CTTAAG	2 cut(s)	1502, 2018
AflIII	ACRYGT	3 cut(s)	408, 454, 1446
AgsI	TTSAA	8 cut(s)	113, 218, 350, 677, 1395, 1799, 1874, 1904
AjiI	CACGTC	1 cut(s)	811
AjnI	CCWGG	2 cut(s)	1892, 2029
AluBI	AGCT	5 cut(s)	563, 1040, 1051, 1268, 1601
AluI	AGCT	5 cut(s)	563, 1040, 1051, 1268, 1601
Alw21I	GWGCWC	1 cut(s)	1840
Alw26I	GTCTC	4 cut(s)	210, 1066, 1522, 1693
Alw44I	GTGCAC	1 cut(s)	1836
AlwI	GGATC	9 cut(s)	1193, 1206, 1301, 1462, 1758, 1921, 2016, 2209, 2222
Ama87I	CYCGRG	2 cut(s)	436, 2272
AoxI	GGCC	7 cut(s)	240, 1374, 1381, 1555, 1633, 1776, 2014
ApaLI	GTGCAC	1 cut(s)	1836
ApeKI	GCWGC	6 cut(s)	563, 1358, 1598, 1847, 1982, 2327
ApoI	RAATTY	3 cut(s)	282, 1930, 2256
AseI	ATTAAT	1 cut(s)	2052
Asp718I	GGTACC	1 cut(s)	1922
AspLEI	GCGC	7 cut(s)	568, 742, 754, 829, 932, 1786, 1987
AspS9I	GGNCC	3 cut(s)	341, 1374, 1936
AsuC2I	CCSGG	3 cut(s)	229, 2273, 2274
AsuHPI	GGTGA	4 cut(s)	665, 1000, 2071, 2327
AvaI	CYCGRG	2 cut(s)	436, 2272
AvaII	GGWCC	2 cut(s)	341, 1936
BaeGI	GKGCMC	1 cut(s)	1840
BalI	TGGCCA	1 cut(s)	1383
BamHI	GGATCC	2 cut(s)	1198, 2214
BanI	GGYRCC	1 cut(s)	1922
BanII	GRGCYC	2 cut(s)	498, 2273
BauI	CACGAG	1 cut(s)	1011
Bbv12I	GWGCWC	1 cut(s)	1840
BbvI	GCAGC	6 cut(s)	550, 1370, 1610, 1834, 1994, 2314
BccI	CCATC	9 cut(s)	165, 187, 575, 1142, 1720, 1965, 2100, 2146, 2399
BciT130I	CCWGG	2 cut(s)	1894, 2031
BcnI	CCSGG	3 cut(s)	229, 2273, 2274
BcoDI	GTCTC	4 cut(s)	210, 1066, 1522, 1693
BfaI	CTAG	4 cut(s)	224, 1910, 2135, 2240
BfmI	CTRYAG	1 cut(s)	660
BfrI	CTTAAG	2 cut(s)	1502, 2018
BfuAI	ACCTGC	1 cut(s)	1319
BisI	GCNGC	6 cut(s)	564, 1359, 1599, 1848, 1983, 2328
BlpI	GCTNAGC	1 cut(s)	755
BlsI	GCNGC	6 cut(s)	565, 1360, 1600, 1849, 1984, 2329
BmcAI	AGTACT	1 cut(s)	823
Bme1390I	CCNGG	5 cut(s)	229, 1894, 2031, 2273, 2274
Bme18I	GGWCC	2 cut(s)	341, 1936
BmeT110I	CYCGRG	2 cut(s)	436, 2272
BmgBI	CACGTC	1 cut(s)	811
BmgT120I	GGNCC	3 cut(s)	341, 1374, 1936
BmiI	GGNNCC	5 cut(s)	311, 1200, 1375, 1924, 2216
BmrFI	CCNGG	5 cut(s)	229, 1894, 2031, 2273, 2274
BmrI	ACTGGG	2 cut(s)	395, 1031
BmsI	GCATC	3 cut(s)	874, 1162, 1969
BmuI	ACTGGG	2 cut(s)	395, 1031
Bpu1102I	GCTNAGC	1 cut(s)	755
BpuEI	CTTGAG	2 cut(s)	126, 410
BpuMI	CCSGG	3 cut(s)	229, 2273, 2274
BsaAI	YACGTR	1 cut(s)	411
BsaBI	GATNNNNATC	2 cut(s)	130, 471
BsaHI	GRCGYC	1 cut(s)	507
BsaI	GGTCTC	1 cut(s)	210
BsaJI	CCNNGG	8 cut(s)	760, 1323, 1384, 1558, 1721, 1779, 2272, 2273
BsaWI	WCCGGW	1 cut(s)	1925
BsaXI	ACNNNNNCTCC	4 cut(s)	188, 218, 787, 817
Bsc4I	CCNNNNNNNGG	6 cut(s)	196, 333, 766, 792, 1564, 1726
Bse118I	RCCGGY	2 cut(s)	1100, 1339
Bse1I	ACTGG	4 cut(s)	390, 1026, 1688, 1771
Bse3DI	GCAATG	4 cut(s)	894, 969, 1536, 2244
Bse8I	GATNNNNATC	2 cut(s)	130, 471
BseBI	CCWGG	2 cut(s)	1894, 2031
BseDI	CCNNGG	8 cut(s)	760, 1323, 1384, 1558, 1721, 1779, 2272, 2273
BseGI	GGATG	6 cut(s)	1134, 1731, 1981, 2039, 2092, 2157
BseJI	GATNNNNATC	2 cut(s)	130, 471
BseLI	CCNNNNNNNGG	6 cut(s)	196, 333, 766, 792, 1564, 1726
BseMI	GCAATG	4 cut(s)	894, 969, 1536, 2244
BseMII	CTCAG	5 cut(s)	746, 1052, 1248, 2120, 2258
BseNI	ACTGG	4 cut(s)	390, 1026, 1688, 1771
BseRI	GAGGAG	4 cut(s)	805, 808, 886, 2216
BseSI	GKGCMC	1 cut(s)	1840
BseXI	GCAGC	6 cut(s)	550, 1370, 1610, 1834, 1994, 2314
BseYI	CCCAGC	1 cut(s)	626
BsgI	GTGCAG	1 cut(s)	1265
Bsh1236I	CGCG	2 cut(s)	752, 869
Bsh1285I	CGRYCG	1 cut(s)	16
BshFI	GGCC	7 cut(s)	242, 1376, 1383, 1557, 1635, 1778, 2016
BshNI	GGYRCC	1 cut(s)	1922
BsiEI	CGRYCG	1 cut(s)	16
BsiHKAI	GWGCWC	1 cut(s)	1840
BsiHKCI	CYCGRG	2 cut(s)	436, 2272
BsiSI	CCGG	5 cut(s)	229, 1101, 1340, 1926, 2273
BslFI	GGGAC	2 cut(s)	566, 2074
BslI	CCNNNNNNNGG	6 cut(s)	196, 333, 766, 792, 1564, 1726
BsmAI	GTCTC	4 cut(s)	210, 1066, 1522, 1693
BsmBI	CGTCTC	1 cut(s)	1066
BsmFI	GGGAC	2 cut(s)	566, 2074
BsmI	GAATGC	6 cut(s)	120, 619, 709, 1175, 1503, 1531
BsnI	GGCC	7 cut(s)	242, 1376, 1383, 1557, 1635, 1778, 2016
Bso31I	GGTCTC	1 cut(s)	210
BsoBI	CYCGRG	2 cut(s)	436, 2272
Bsp1286I	GDGCHC	3 cut(s)	498, 1840, 2273
Bsp1407I	TGTACA	2 cut(s)	1953, 2162
Bsp1720I	GCTNAGC	1 cut(s)	755
Bsp19I	CCATGG	1 cut(s)	1384
BspACI	CCGC	6 cut(s)	12, 689, 722, 750, 1507, 2305
BspANI	GGCC	7 cut(s)	242, 1376, 1383, 1557, 1635, 1778, 2016
BspCNI	CTCAG	5 cut(s)	747, 1053, 1247, 2119, 2259
BspFNI	CGCG	2 cut(s)	752, 869
BspLI	GGNNCC	5 cut(s)	311, 1200, 1375, 1924, 2216
BspMAI	CTGCAG	1 cut(s)	664
BspMI	ACCTGC	1 cut(s)	1319
BspPI	GGATC	9 cut(s)	1193, 1206, 1301, 1462, 1758, 1921, 2016, 2209, 2222
BspT107I	GGYRCC	1 cut(s)	1922
BspTI	CTTAAG	2 cut(s)	1502, 2018
BspTNI	GGTCTC	1 cut(s)	210
BsrBI	CCGCTC	1 cut(s)	689
BsrDI	GCAATG	4 cut(s)	894, 969, 1536, 2244
BsrFI	RCCGGY	2 cut(s)	1100, 1339
BsrGI	TGTACA	2 cut(s)	1953, 2162
BsrI	ACTGG	4 cut(s)	390, 1026, 1688, 1771
BssAI	RCCGGY	2 cut(s)	1100, 1339
BssECI	CCNNGG	8 cut(s)	760, 1323, 1384, 1558, 1721, 1779, 2272, 2273
BssNI	GRCGYC	1 cut(s)	507
BssSI	CACGAG	1 cut(s)	1011
BssT1I	CCWWGG	5 cut(s)	760, 1323, 1384, 1558, 1721
Bst2BI	CACGAG	1 cut(s)	1011
Bst2UI	CCWGG	2 cut(s)	1894, 2031
Bst4CI	ACNGT	8 cut(s)	92, 345, 736, 1213, 1581, 1773, 1958, 2371
Bst6I	CTCTTC	4 cut(s)	84, 213, 2018, 2193
BstACI	GRCGYC	1 cut(s)	507
BstAFI	CTTAAG	2 cut(s)	1502, 2018
BstAPI	GCANNNNNTGC	1 cut(s)	1844
BstAUI	TGTACA	2 cut(s)	1953, 2162
BstBAI	YACGTR	1 cut(s)	411
BstDEI	CTNAG	6 cut(s)	755, 818, 1061, 1234, 2106, 2267
BstDSI	CCRYGG	1 cut(s)	1384
BstENI	CCTNNNNNAGG	1 cut(s)	1562
BstF5I	GGATG	6 cut(s)	1134, 1731, 1981, 2039, 2092, 2157
BstFNI	CGCG	2 cut(s)	752, 869
BstHHI	GCGC	7 cut(s)	568, 742, 754, 829, 932, 1786, 1987
BstMAI	GTCTC	4 cut(s)	210, 1066, 1522, 1693
BstMCI	CGRYCG	1 cut(s)	16
BstMWI	GCNNNNNNNGC	8 cut(s)	614, 623, 695, 704, 1097, 1265, 1325, 1844
BstNI	CCWGG	2 cut(s)	1894, 2031
BstNSI	RCATGY	8 cut(s)	379, 435, 458, 482, 1450, 1807, 1854, 1991
BstSCI	CCNGG	5 cut(s)	227, 1892, 2029, 2271, 2272
BstSFI	CTRYAG	1 cut(s)	660
BstSLI	GKGCMC	1 cut(s)	1840
BstUI	CGCG	2 cut(s)	752, 869
BstV1I	GCAGC	6 cut(s)	550, 1370, 1610, 1834, 1994, 2314
BstX2I	RGATCY	5 cut(s)	1198, 1467, 1750, 1913, 2214
BstYI	RGATCY	5 cut(s)	1198, 1467, 1750, 1913, 2214
BsuRI	GGCC	7 cut(s)	242, 1376, 1383, 1557, 1635, 1778, 2016
BtgI	CCRYGG	1 cut(s)	1384
BtgZI	GCGATG	1 cut(s)	935
BtrI	CACGTC	1 cut(s)	811
BtsCI	GGATG	6 cut(s)	1134, 1731, 1981, 2039, 2092, 2157
BtsI	GCAGTG	2 cut(s)	519, 657
BtsIMutI	CAGTG	8 cut(s)	519, 657, 741, 860, 1019, 1668, 1681, 2407
BveI	ACCTGC	1 cut(s)	1319
CfoI	GCGC	7 cut(s)	568, 742, 754, 829, 932, 1786, 1987
Cfr10I	RCCGGY	2 cut(s)	1100, 1339
Cfr13I	GGNCC	3 cut(s)	341, 1374, 1936
Cfr9I	CCCGGG	1 cut(s)	2272
CpoI	CGGWCCG	1 cut(s)	341
CspI	CGGWCCG	1 cut(s)	341
DdeI	CTNAG	6 cut(s)	755, 818, 1061, 1234, 2106, 2267
DraI	TTTAAA	1 cut(s)	1113
DrdI	GACNNNNNNGTC	1 cut(s)	506
DseDI	GACNNNNNNGTC	1 cut(s)	506
EaeI	YGGCCR	2 cut(s)	1381, 1776
Eam1104I	CTCTTC	4 cut(s)	84, 213, 2018, 2193
EarI	CTCTTC	4 cut(s)	84, 213, 2018, 2193
Eco130I	CCWWGG	5 cut(s)	760, 1323, 1384, 1558, 1721
Eco147I	AGGCCT	1 cut(s)	2016
Eco24I	GRGCYC	2 cut(s)	498, 2273
Eco31I	GGTCTC	1 cut(s)	210
Eco47I	GGWCC	2 cut(s)	341, 1936
Eco57I	CTGAAG	2 cut(s)	1692, 1938
Eco88I	CYCGRG	2 cut(s)	436, 2272
EcoNI	CCTNNNNNAGG	1 cut(s)	1562
EcoO109I	RGGNCCY	1 cut(s)	1374
EcoRI	GAATTC	1 cut(s)	2256
EcoRII	CCWGG	2 cut(s)	1892, 2029
EcoT14I	CCWWGG	5 cut(s)	760, 1323, 1384, 1558, 1721
EcoT22I	ATGCAT	3 cut(s)	334, 1177, 1745
EcoT38I	GRGCYC	2 cut(s)	498, 2273
ErhI	CCWWGG	5 cut(s)	760, 1323, 1384, 1558, 1721
Esp3I	CGTCTC	1 cut(s)	1066
FalI	AAGNNNNNCTT	2 cut(s)	1257, 1289
FaqI	GGGAC	2 cut(s)	566, 2074
FauI	CCCGC	3 cut(s)	682, 1500, 2298
FauNDI	CATATG	2 cut(s)	934, 1739
FblI	GTMKAC	1 cut(s)	2139
Fnu4HI	GCNGC	6 cut(s)	564, 1359, 1599, 1848, 1983, 2328
FokI	GGATG	6 cut(s)	1121, 1738, 1988, 2046, 2079, 2164
FriOI	GRGCYC	2 cut(s)	498, 2273
Fsp4HI	GCNGC	6 cut(s)	564, 1359, 1599, 1848, 1983, 2328
FspBI	CTAG	4 cut(s)	224, 1910, 2135, 2240
FspI	TGCGCA	1 cut(s)	567
GlaI	GCGC	7 cut(s)	567, 741, 753, 828, 931, 1785, 1986
GluI	GCNGC	6 cut(s)	564, 1359, 1599, 1848, 1983, 2328
GsaI	CCCAGC	1 cut(s)	630
HaeIII	GGCC	7 cut(s)	242, 1376, 1383, 1557, 1635, 1778, 2016
HapII	CCGG	5 cut(s)	229, 1101, 1340, 1926, 2273
HhaI	GCGC	7 cut(s)	568, 742, 754, 829, 932, 1786, 1987
Hin1I	GRCGYC	1 cut(s)	507
Hin6I	GCGC	7 cut(s)	566, 740, 752, 827, 930, 1784, 1985
HinP1I	GCGC	7 cut(s)	566, 740, 752, 827, 930, 1784, 1985
HindIII	AAGCTT	1 cut(s)	1266
HinfI	GANTC	8 cut(s)	500, 876, 947, 1549, 2026, 2062, 2099, 2383
HpaII	CCGG	5 cut(s)	229, 1101, 1340, 1926, 2273
HphI	GGTGA	4 cut(s)	665, 1000, 2071, 2327
Hpy166II	GTNNAC	6 cut(s)	408, 865, 1349, 1838, 1861, 2140
Hpy188I	TCNGA	7 cut(s)	505, 1037, 1062, 1918, 1994, 2109, 2268
Hpy188III	TCNNGA	5 cut(s)	464, 898, 1310, 2047, 2096
Hpy8I	GTNNAC	6 cut(s)	408, 865, 1349, 1838, 1861, 2140
Hpy99I	CGWCG	2 cut(s)	33, 281
HpyAV	CCTTC	5 cut(s)	760, 1558, 1667, 1913, 1999
HpyCH4III	ACNGT	8 cut(s)	92, 345, 736, 1213, 1581, 1773, 1958, 2371
HpyCH4IV	ACGT	3 cut(s)	410, 507, 810
HpyF10VI	GCNNNNNNNGC	8 cut(s)	614, 623, 695, 704, 1097, 1265, 1325, 1844
HpyF3I	CTNAG	6 cut(s)	755, 818, 1061, 1234, 2106, 2267
HpySE526I	ACGT	3 cut(s)	410, 507, 810
Hsp92I	GRCGYC	1 cut(s)	507
HspAI	GCGC	7 cut(s)	566, 740, 752, 827, 930, 1784, 1985
KpnI	GGTACC	1 cut(s)	1926
KroI	GCCGGC	1 cut(s)	1339
KroNI	GCCGGC	1 cut(s)	1341
LmnI	GCTCC	1 cut(s)	1026
Lsp1109I	GCAGC	6 cut(s)	550, 1370, 1610, 1834, 1994, 2314
LweI	GCATC	3 cut(s)	874, 1162, 1969
MaeI	CTAG	4 cut(s)	224, 1910, 2135, 2240
MaeII	ACGT	3 cut(s)	410, 507, 810
MaeIII	GTNAC	9 cut(s)	92, 653, 779, 1015, 1411, 1621, 1666, 2290, 2350
MbiI	CCGCTC	1 cut(s)	689
MboII	GAAGA	9 cut(s)	71, 200, 719, 1477, 1745, 1895, 2035, 2210, 2252
MfeI	CAATTG	1 cut(s)	1395
MflI	RGATCY	5 cut(s)	1198, 1467, 1750, 1913, 2214
MhlI	GDGCHC	3 cut(s)	498, 1840, 2273
MlsI	TGGCCA	1 cut(s)	1383
MluNI	TGGCCA	1 cut(s)	1383
MlyI	GAGTC	3 cut(s)	494, 2035, 2392
MmeI	TCCRAC	1 cut(s)	893
Mox20I	TGGCCA	1 cut(s)	1383
Mph1103I	ATGCAT	3 cut(s)	334, 1177, 1745
MroNI	GCCGGC	1 cut(s)	1339
MscI	TGGCCA	1 cut(s)	1383
MseI	TTAA	8 cut(s)	393, 1095, 1112, 1439, 1503, 1998, 2019, 2052
MslI	CAYNNNNRTG	4 cut(s)	477, 1086, 1742, 2400
Msp20I	TGGCCA	1 cut(s)	1383
MspA1I	CMGCKG	1 cut(s)	1601
MspCI	CTTAAG	2 cut(s)	1502, 2018
MspI	CCGG	5 cut(s)	229, 1101, 1340, 1926, 2273
MspR9I	CCNGG	5 cut(s)	229, 1894, 2031, 2273, 2274
MunI	CAATTG	1 cut(s)	1395
Mva1269I	GAATGC	6 cut(s)	120, 619, 709, 1175, 1503, 1531
MvaI	CCWGG	2 cut(s)	1894, 2031
MvnI	CGCG	2 cut(s)	752, 869
MwoI	GCNNNNNNNGC	8 cut(s)	614, 623, 695, 704, 1097, 1265, 1325, 1844
NaeI	GCCGGC	1 cut(s)	1341
NciI	CCSGG	3 cut(s)	229, 2273, 2274
NcoI	CCATGG	1 cut(s)	1384
NdeI	CATATG	2 cut(s)	934, 1739
NgoMIV	GCCGGC	1 cut(s)	1339
NlaIV	GGNNCC	5 cut(s)	311, 1200, 1375, 1924, 2216
NmeAIII	GCCGAG	2 cut(s)	293, 1804
NmuCI	GTSAC	3 cut(s)	653, 1621, 1666
NsbI	TGCGCA	1 cut(s)	567
NsiI	ATGCAT	3 cut(s)	334, 1177, 1745
NspI	RCATGY	8 cut(s)	379, 435, 458, 482, 1450, 1807, 1854, 1991
PaeI	GCATGC	3 cut(s)	379, 435, 1807
PaqCI	CACCTGC	1 cut(s)	1319
PceI	AGGCCT	1 cut(s)	2016
PciI	ACATGT	2 cut(s)	454, 1446
PcsI	WCGNNNNNNNCGW	2 cut(s)	387, 504
PctI	GAATGC	6 cut(s)	120, 619, 709, 1175, 1503, 1531
PdiI	GCCGGC	1 cut(s)	1341
PfeI	GAWTC	5 cut(s)	876, 947, 1549, 2062, 2099
PfoI	TCCNGGA	2 cut(s)	1892, 2029
PkrI	GCNGC	6 cut(s)	565, 1360, 1600, 1849, 1984, 2329
PleI	GAGTC	3 cut(s)	494, 2034, 2391
PpsI	GAGTC	3 cut(s)	494, 2034, 2391
Ppu21I	YACGTR	1 cut(s)	411
PscI	ACATGT	2 cut(s)	454, 1446
PshBI	ATTAAT	1 cut(s)	2052
PsiI	TTATAA	1 cut(s)	170
Psp6I	CCWGG	2 cut(s)	1892, 2029
PspFI	CCCAGC	1 cut(s)	626
PspGI	CCWGG	2 cut(s)	1892, 2029
PspN4I	GGNNCC	5 cut(s)	311, 1200, 1375, 1924, 2216
PspPI	GGNCC	3 cut(s)	341, 1374, 1936
PstI	CTGCAG	1 cut(s)	664
PsuI	RGATCY	5 cut(s)	1198, 1467, 1750, 1913, 2214
PvuII	CAGCTG	1 cut(s)	1601
RseI	CAYNNNNRTG	4 cut(s)	477, 1086, 1742, 2400
Rsr2I	CGGWCCG	1 cut(s)	341
RsrII	CGGWCCG	1 cut(s)	341
SaqAI	TTAA	8 cut(s)	393, 1095, 1112, 1439, 1503, 1998, 2019, 2052
SatI	GCNGC	6 cut(s)	564, 1359, 1599, 1848, 1983, 2328
Sau96I	GGNCC	3 cut(s)	341, 1374, 1936
ScaI	AGTACT	1 cut(s)	823
SchI	GAGTC	3 cut(s)	494, 2035, 2392
ScrFI	CCNGG	5 cut(s)	229, 1894, 2031, 2273, 2274
SduI	GDGCHC	3 cut(s)	498, 1840, 2273
SfaNI	GCATC	3 cut(s)	874, 1162, 1969
SfcI	CTRYAG	1 cut(s)	660
SinI	GGWCC	2 cut(s)	341, 1936
SmaI	CCCGGG	1 cut(s)	2274
SmiI	ATTTAAAT	1 cut(s)	1113
SmiMI	CAYNNNNRTG	4 cut(s)	477, 1086, 1742, 2400
SmlI	CTYRAG	4 cut(s)	141, 425, 1502, 2018
SmoI	CTYRAG	4 cut(s)	141, 425, 1502, 2018
SphI	GCATGC	3 cut(s)	379, 435, 1807
SseBI	AGGCCT	1 cut(s)	2016
SsiI	CCGC	6 cut(s)	12, 689, 722, 750, 1507, 2305
SspI	AATATT	1 cut(s)	1870
SspMI	CTAG	4 cut(s)	224, 1910, 2135, 2240
StuI	AGGCCT	1 cut(s)	2016
StyD4I	CCNGG	5 cut(s)	227, 1892, 2029, 2271, 2272
StyI	CCWWGG	5 cut(s)	760, 1323, 1384, 1558, 1721
SwaI	ATTTAAAT	1 cut(s)	1113
TaaI	ACNGT	8 cut(s)	92, 345, 736, 1213, 1581, 1773, 1958, 2371
TaiI	ACGT	3 cut(s)	413, 510, 813
TaqI	TCGA	9 cut(s)	42, 124, 276, 381, 498, 1454, 1491, 1825, 2046
TatI	WGTACW	7 cut(s)	366, 405, 821, 1078, 1449, 1953, 2162
TfiI	GAWTC	5 cut(s)	876, 947, 1549, 2062, 2099
Tru1I	TTAA	8 cut(s)	393, 1095, 1112, 1439, 1503, 1998, 2019, 2052
Tru9I	TTAA	8 cut(s)	393, 1095, 1112, 1439, 1503, 1998, 2019, 2052
TscAI	CASTG	8 cut(s)	526, 664, 741, 860, 1026, 1675, 1688, 2407
TseFI	GTSAC	3 cut(s)	653, 1621, 1666
TseI	GCWGC	6 cut(s)	563, 1358, 1598, 1847, 1982, 2327
Tsp45I	GTSAC	3 cut(s)	653, 1621, 1666
TspGWI	ACGGA	1 cut(s)	354
TspMI	CCCGGG	1 cut(s)	2272
TspRI	CASTG	8 cut(s)	526, 664, 741, 860, 1026, 1675, 1688, 2407
Vha464I	CTTAAG	2 cut(s)	1502, 2018
VneI	GTGCAC	1 cut(s)	1836
VpaK11BI	GGWCC	2 cut(s)	341, 1936
VspI	ATTAAT	1 cut(s)	2052
XagI	CCTNNNNNAGG	1 cut(s)	1562
XapI	RAATTY	3 cut(s)	282, 1930, 2256
XceI	RCATGY	8 cut(s)	379, 435, 458, 482, 1450, 1807, 1854, 1991
XcmI	CCANNNNNNNNNTGG	2 cut(s)	190, 2037
XmaI	CCCGGG	1 cut(s)	2272
XmiI	GTMKAC	1 cut(s)	2139
XspI	CTAG	4 cut(s)	224, 1910, 2135, 2240
ZraI	GACGTC	1 cut(s)	508
ZrmI	AGTACT	1 cut(s)	823
Zsp2I	ATGCAT	3 cut(s)	334, 1177, 1745

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.