Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036714.1

Orthogroup ID

OG0011260

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 726

Gene Structure 725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036714.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 725 bp

atgtatgcaaagtgtgggattatagatgatgcattcaggttatttgatataatggatccaaaagacacggtttcttatggtgctatcatctcaggctgtgcgcagaatggttatgcaaaggaagctttgcttatattccaccaaatgcagttgtctgggattgatccagatttggcaaccttggcaagtgttttgccggcttgttcacatttggcagccctgcaacatggggcctgtggccatggtttttcaattgttcatggctttgttacagacacttcaatttgtaatgccttaatagacatgtactcgaaatgtgggaagatccacataggcaggcaagtattcgacagaatgcttaagcgggatactgtctcatggaatgcaatgatagttggttatgggattcatggccttgggaaggaagcaatttcacagttccacaatatgcaggcagctggaataaagcccgacgatgtgactttcattggcctcttatctgcttgcagtcattcggggcttgtcactgaaggaaaacactggtttagtgctatgagacaagatttcagcataacccctaggatggaacactacatatgcatggtggatcttcttgcccgaactggactgttggccgaggcgcatagtttcattcaaagcatgccatttgaggctgatgttcgagtatggagtgcactacttgctgcatgtagggttcacaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

241

Amino Acids

26.35

Weight (kDa)

6.33

Isoelectric Point (pI)

26.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16610
fragaria_vesca	FvH4_5g18140 FvH4_5g18140
malus_domestica	MD14G1243800.v1.1
prunus_persica	Prupe.5G241400_v2.0.a1 Prupe.5G241400_v2.0.a1
pyrus_communis	pycom14g20490
rosa_chinensis	RchiOBHm_Chr7g0177471
rosa_laevigata	RLG00000005535
rosa_multiflora	Rmu_co8313469.1_g000001 Rmu_sc0036713.1_g000001 Rmu_sc0036714.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275850
rosa_rugosa	Rorug06G0406200 Rorug06G0406300
rosa_samantha	Rh7AG005800 Rh7BG005700 Rh7CG006100 Rh7DG005600
rosa_wichuraiana	Rw7G000470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	102
AciI	CCGC	1 cut(s)	364
AclWI	GGATC	5 cut(s)	50, 63, 158, 319, 615
AcoI	YGGCCR	2 cut(s)	238, 633
AcuI	CTGAAG	1 cut(s)	549
AfaI	GTAC	1 cut(s)	308
AfiI	CCNNNNNNNGG	2 cut(s)	421, 583
AflII	CTTAAG	1 cut(s)	359
AflIII	ACRYGT	1 cut(s)	303
AgsI	TTSAA	3 cut(s)	252, 282, 656
AluBI	AGCT	2 cut(s)	125, 458
AluI	AGCT	2 cut(s)	125, 458
Alw21I	GWGCWC	1 cut(s)	697
Alw26I	GTCTC	2 cut(s)	379, 550
Alw44I	GTGCAC	1 cut(s)	693
AlwI	GGATC	5 cut(s)	50, 63, 158, 319, 615
AoxI	GGCC	5 cut(s)	231, 238, 412, 490, 633
ApaLI	GTGCAC	1 cut(s)	693
ApeKI	GCWGC	3 cut(s)	215, 455, 704
AspA2I	CCTAGG	1 cut(s)	578
AspLEI	GCGC	2 cut(s)	103, 643
AspS9I	GGNCC	1 cut(s)	231
AvrII	CCTAGG	1 cut(s)	578
BaeGI	GKGCMC	1 cut(s)	697
BalI	TGGCCA	1 cut(s)	240
BamHI	GGATCC	1 cut(s)	55
Bbv12I	GWGCWC	1 cut(s)	697
BbvI	GCAGC	3 cut(s)	227, 467, 691
BccI	CCATC	1 cut(s)	577
BciVI	GTATCC	1 cut(s)	361
BcoDI	GTCTC	2 cut(s)	379, 550
BfaI	CTAG	1 cut(s)	579
BfrI	CTTAAG	1 cut(s)	359
BfuI	GTATCC	1 cut(s)	361
BisI	GCNGC	3 cut(s)	216, 456, 705
BlnI	CCTAGG	1 cut(s)	578
BlsI	GCNGC	3 cut(s)	217, 457, 706
BmgT120I	GGNCC	1 cut(s)	231
BmiI	GGNNCC	2 cut(s)	57, 232
BmsI	GCATC	1 cut(s)	19
BsaJI	CCNNGG	5 cut(s)	180, 241, 415, 578, 636
Bsc4I	CCNNNNNNNGG	2 cut(s)	421, 583
Bse118I	RCCGGY	1 cut(s)	196
Bse1I	ACTGG	2 cut(s)	545, 628
Bse3DI	GCAATG	1 cut(s)	393
BseDI	CCNNGG	5 cut(s)	180, 241, 415, 578, 636
BseGI	GGATG	1 cut(s)	588
BseLI	CCNNNNNNNGG	2 cut(s)	421, 583
BseMI	GCAATG	1 cut(s)	393
BseMII	CTCAG	1 cut(s)	105
BseNI	ACTGG	2 cut(s)	545, 628
BseSI	GKGCMC	1 cut(s)	697
BseXI	GCAGC	3 cut(s)	227, 467, 691
BshFI	GGCC	5 cut(s)	233, 240, 414, 492, 635
BsiHKAI	GWGCWC	1 cut(s)	697
BsiSI	CCGG	1 cut(s)	197
BslI	CCNNNNNNNGG	2 cut(s)	421, 583
BsmAI	GTCTC	2 cut(s)	379, 550
BsmI	GAATGC	3 cut(s)	32, 360, 388
BsnI	GGCC	5 cut(s)	233, 240, 414, 492, 635
Bsp1286I	GDGCHC	1 cut(s)	697
Bsp143I	GATC	4 cut(s)	55, 163, 324, 607
Bsp19I	CCATGG	1 cut(s)	241
BspACI	CCGC	1 cut(s)	364
BspANI	GGCC	5 cut(s)	233, 240, 414, 492, 635
BspCNI	CTCAG	1 cut(s)	104
BspLI	GGNNCC	2 cut(s)	57, 232
BspPI	GGATC	5 cut(s)	50, 63, 158, 319, 615
BspTI	CTTAAG	1 cut(s)	359
BsrDI	GCAATG	1 cut(s)	393
BsrFI	RCCGGY	1 cut(s)	196
BsrI	ACTGG	2 cut(s)	545, 628
BssAI	RCCGGY	1 cut(s)	196
BssECI	CCNNGG	5 cut(s)	180, 241, 415, 578, 636
BssMI	GATC	4 cut(s)	55, 163, 324, 607
BssT1I	CCWWGG	4 cut(s)	180, 241, 415, 578
Bst4CI	ACNGT	4 cut(s)	70, 373, 438, 630
BstAFI	CTTAAG	1 cut(s)	359
BstAPI	GCANNNNNTGC	1 cut(s)	701
BstC8I	GCNNGC	5 cut(s)	198, 338, 453, 505, 662
BstDEI	CTNAG	1 cut(s)	91
BstDSI	CCRYGG	1 cut(s)	241
BstENI	CCTNNNNNAGG	1 cut(s)	419
BstF5I	GGATG	1 cut(s)	588
BstHHI	GCGC	2 cut(s)	103, 643
BstKTI	GATC	4 cut(s)	58, 166, 327, 610
BstMAI	GTCTC	2 cut(s)	379, 550
BstMBI	GATC	4 cut(s)	55, 163, 324, 607
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 182, 701
BstNSI	RCATGY	3 cut(s)	307, 664, 711
BstSLI	GKGCMC	1 cut(s)	697
BstV1I	GCAGC	3 cut(s)	227, 467, 691
BstX2I	RGATCY	3 cut(s)	55, 324, 607
BstYI	RGATCY	3 cut(s)	55, 324, 607
BsuI	GTATCC	1 cut(s)	361
BsuRI	GGCC	5 cut(s)	233, 240, 414, 492, 635
BtgI	CCRYGG	1 cut(s)	241
BtsCI	GGATG	1 cut(s)	588
BtsIMutI	CAGTG	2 cut(s)	525, 538
Cac8I	GCNNGC	5 cut(s)	198, 338, 453, 505, 662
CfoI	GCGC	2 cut(s)	103, 643
Cfr10I	RCCGGY	1 cut(s)	196
Cfr13I	GGNCC	1 cut(s)	231
Csp6I	GTAC	1 cut(s)	307
CviAII	CATG	9 cut(s)	227, 242, 260, 304, 378, 410, 601, 661, 708
CviQI	GTAC	1 cut(s)	307
DdeI	CTNAG	1 cut(s)	91
DpnI	GATC	4 cut(s)	57, 165, 326, 609
DpnII	GATC	4 cut(s)	55, 163, 324, 607
EaeI	YGGCCR	2 cut(s)	238, 633
Eco130I	CCWWGG	4 cut(s)	180, 241, 415, 578
Eco57I	CTGAAG	1 cut(s)	549
EcoNI	CCTNNNNNAGG	1 cut(s)	419
EcoO109I	RGGNCCY	1 cut(s)	231
EcoT14I	CCWWGG	4 cut(s)	180, 241, 415, 578
EcoT22I	ATGCAT	2 cut(s)	34, 602
ErhI	CCWWGG	4 cut(s)	180, 241, 415, 578
FaeI	CATG	9 cut(s)	230, 245, 263, 307, 381, 413, 604, 664, 711
FalI	AAGNNNNNCTT	2 cut(s)	114, 146
FatI	CATG	9 cut(s)	226, 241, 259, 303, 377, 409, 600, 660, 707
FauI	CCCGC	1 cut(s)	357
FauNDI	CATATG	1 cut(s)	596
Fnu4HI	GCNGC	3 cut(s)	216, 456, 705
FokI	GGATG	1 cut(s)	595
Fsp4HI	GCNGC	3 cut(s)	216, 456, 705
FspBI	CTAG	1 cut(s)	579
FspI	TGCGCA	1 cut(s)	102
GlaI	GCGC	2 cut(s)	102, 642
GluI	GCNGC	3 cut(s)	216, 456, 705
HaeIII	GGCC	5 cut(s)	233, 240, 414, 492, 635
HapII	CCGG	1 cut(s)	197
HhaI	GCGC	2 cut(s)	103, 643
Hin1II	CATG	9 cut(s)	230, 245, 263, 307, 381, 413, 604, 664, 711
Hin6I	GCGC	2 cut(s)	101, 641
HinP1I	GCGC	2 cut(s)	101, 641
HindIII	AAGCTT	1 cut(s)	123
HinfI	GANTC	1 cut(s)	406
HpaII	CCGG	1 cut(s)	197
Hpy166II	GTNNAC	3 cut(s)	206, 695, 718
Hpy188III	TCNNGA	1 cut(s)	167
Hpy8I	GTNNAC	3 cut(s)	206, 695, 718
Hpy99I	CGWCG	1 cut(s)	476
HpyAV	CCTTC	2 cut(s)	415, 524
HpyCH4III	ACNGT	4 cut(s)	70, 373, 438, 630
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 182, 701
HpyF3I	CTNAG	1 cut(s)	91
Hsp92II	CATG	9 cut(s)	230, 245, 263, 307, 381, 413, 604, 664, 711
HspAI	GCGC	2 cut(s)	101, 641
KroI	GCCGGC	1 cut(s)	196
KroNI	GCCGGC	1 cut(s)	198
Kzo9I	GATC	4 cut(s)	55, 163, 324, 607
Lsp1109I	GCAGC	3 cut(s)	227, 467, 691
LweI	GCATC	1 cut(s)	19
MaeI	CTAG	1 cut(s)	579
MaeIII	GTNAC	3 cut(s)	268, 478, 523
MalI	GATC	4 cut(s)	57, 165, 326, 609
MboI	GATC	4 cut(s)	55, 163, 324, 607
MboII	GAAGA	2 cut(s)	334, 602
MfeI	CAATTG	1 cut(s)	252
MflI	RGATCY	3 cut(s)	55, 324, 607
MhlI	GDGCHC	1 cut(s)	697
MlsI	TGGCCA	1 cut(s)	240
MluCI	AATT	3 cut(s)	252, 282, 429
MluNI	TGGCCA	1 cut(s)	240
MnlI	CCTC	3 cut(s)	503, 631, 664
Mox20I	TGGCCA	1 cut(s)	240
Mph1103I	ATGCAT	2 cut(s)	34, 602
MroNI	GCCGGC	1 cut(s)	196
MscI	TGGCCA	1 cut(s)	240
MseI	TTAA	2 cut(s)	296, 360
MslI	CAYNNNNRTG	1 cut(s)	599
Msp20I	TGGCCA	1 cut(s)	240
MspA1I	CMGCKG	1 cut(s)	458
MspCI	CTTAAG	1 cut(s)	359
MspI	CCGG	1 cut(s)	197
MunI	CAATTG	1 cut(s)	252
Mva1269I	GAATGC	3 cut(s)	32, 360, 388
MwoI	GCNNNNNNNGC	3 cut(s)	122, 182, 701
NaeI	GCCGGC	1 cut(s)	198
NcoI	CCATGG	1 cut(s)	241
NdeI	CATATG	1 cut(s)	596
NdeII	GATC	4 cut(s)	55, 163, 324, 607
NgoMIV	GCCGGC	1 cut(s)	196
NlaIII	CATG	9 cut(s)	230, 245, 263, 307, 381, 413, 604, 664, 711
NlaIV	GGNNCC	2 cut(s)	57, 232
NmeAIII	GCCGAG	1 cut(s)	661
NmuCI	GTSAC	2 cut(s)	478, 523
NsbI	TGCGCA	1 cut(s)	102
NsiI	ATGCAT	2 cut(s)	34, 602
NspI	RCATGY	3 cut(s)	307, 664, 711
PaeI	GCATGC	1 cut(s)	664
PciI	ACATGT	1 cut(s)	303
PctI	GAATGC	3 cut(s)	32, 360, 388
PdiI	GCCGGC	1 cut(s)	198
PfeI	GAWTC	1 cut(s)	406
PkrI	GCNGC	3 cut(s)	217, 457, 706
PscI	ACATGT	1 cut(s)	303
PspN4I	GGNNCC	2 cut(s)	57, 232
PspPI	GGNCC	1 cut(s)	231
PsuI	RGATCY	3 cut(s)	55, 324, 607
PvuII	CAGCTG	1 cut(s)	458
RsaI	GTAC	1 cut(s)	308
RsaNI	GTAC	1 cut(s)	307
RseI	CAYNNNNRTG	1 cut(s)	599
SaqAI	TTAA	2 cut(s)	296, 360
SatI	GCNGC	3 cut(s)	216, 456, 705
Sau3AI	GATC	4 cut(s)	55, 163, 324, 607
Sau96I	GGNCC	1 cut(s)	231
SduI	GDGCHC	1 cut(s)	697
SetI	ASST	4 cut(s)	41, 127, 182, 460
SfaNI	GCATC	1 cut(s)	19
SmiMI	CAYNNNNRTG	1 cut(s)	599
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
SphI	GCATGC	1 cut(s)	664
Sse9I	AATT	3 cut(s)	252, 282, 429
SsiI	CCGC	1 cut(s)	364
SspMI	CTAG	1 cut(s)	579
StyI	CCWWGG	4 cut(s)	180, 241, 415, 578
TaaI	ACNGT	4 cut(s)	70, 373, 438, 630
TaqI	TCGA	3 cut(s)	311, 348, 682
TasI	AATT	3 cut(s)	252, 282, 429
TatI	WGTACW	1 cut(s)	306
TfiI	GAWTC	1 cut(s)	406
Tru1I	TTAA	2 cut(s)	296, 360
Tru9I	TTAA	2 cut(s)	296, 360
TscAI	CASTG	2 cut(s)	532, 545
TseFI	GTSAC	2 cut(s)	478, 523
TseI	GCWGC	3 cut(s)	215, 455, 704
Tsp45I	GTSAC	2 cut(s)	478, 523
TspDTI	ATGAA	4 cut(s)	248, 398, 475, 640
TspRI	CASTG	2 cut(s)	532, 545
Vha464I	CTTAAG	1 cut(s)	359
VneI	GTGCAC	1 cut(s)	693
XagI	CCTNNNNNAGG	1 cut(s)	419
XceI	RCATGY	3 cut(s)	307, 664, 711
XmaJI	CCTAGG	1 cut(s)	578
XspI	CTAG	1 cut(s)	579
Zsp2I	ATGCAT	2 cut(s)	34, 602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.