Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011260

Physical Location & Seq

Genomic Coordinates Reverse (-)

425430 .. 428323

Gene Structure 2894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ15808

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2445 bp

ATGTTATGGTGCGGTCGCCGACTCCCTCGTCGCCATGTTATTGACCAATTCACAACTCTACGCGCACAAGCCTTCTCATCAAACCCTCTTCACTACTACTGTAACTACACAAATCTCCTTGAAGCCTGCATTCGATATAAATCTCTCGCTCAAGCCAAGATAATCCATCAACTTGTTATAAAAGACAATACCCAGATCGAGGACAGGTCTCTTCTACTTGAAAAACTAGCCCGGCTCTACATGGCCTGTAATCAAGTTGAGGTCGCACGCCGAGTGTTCGACGAAATTCCCCAACCAAATGTTATTATTTGGAACCTATTGATAAGAGCCTATGCATGGAACGGACCGTTTGAACGAGCCATCGAGTTGTACTATGGCATGCTCGAACTGGGCGTTAAACCAAGCAAGTACACGTACCCTTTTGTTCTCAAGGCATGCTCGGGTTTGCAGGCGCTACATGTTGGTCAAGATATTCATCAACATGCGAAACGACTTGGGCTCGACTCTGACGTCTATGTTTGCACTGCTTTGATTGATTTGTACGCAAAATGTGGAGACTTGGTAGCTGCGCAGAGTGTGTTTGATGGTATGTTGTATAAAGATGTTGTGGCGTGGAATGCTATGATTGCTGGGTTTTCGCTTCATGGTCTTTATGGTGACGCTGCAGAGTTACTGGTTCAAATGCAGAGAGCGGGAACTGCCCCGAATGCCTCTACCATTGTTGCGGTTCTTCCCACAGTTGCGCAAGCTAATGCGCTGAGGCTGAGCCAAGGGAAGGCAATACATGGTTACTCCATGAGGAGGAGGTTTAGTGATGACGTGGTACTTAGTACTGCGCTTTTGGATATGTATGCTAAATGTCAGTGCATGGTTTACGCGAGGAGAATCTTTGATGCAATGAGTGTCAGGAATGAGGTTTGTTGGAGTGCGATGATAGGCGCATATGTTGGCTGTGATTCCATGAGAGAGGCAATGTCATTGTTTGATGAAATAGTGGTGAAAGATGTAAGGAAACTGACACGAGTTACACTGGGGAGCATACTCCGAGCTTGCACAAAGCTAACTGATCTGAGTAGAGGGAGACGAGTACATTGTTATGCAATTAAAGCCGGTTTTGATTTAAATACAATGGTGGGCAACACCATCCTTTCTATGTATGCAAAGTGTGGGATTATAGATGATGCATTCAGGTTATTTGATATAATGGATCCAAAAGACACGGTTTCTTATGGTGCTATCATCTCAGGCTGTGTGCAGAATGGTTATGCAAAGGAAGCTTTGCTTATATTCCACCAAATGCAGTTGTCTGGGATTGATCCAGATTTGGCAACCATGGCAGGTGTTTTGCCGGCTTGTTCACATTTGGCAGCCCTGCAACATGGGGCCTGTGGCCACGGTTATTCAATTGTTCATGGCTTTGTTACAGACACCTCAATTTGTAATGCCTTAATAGACATGTACTCGAAATGTGGGAAGATCCATATAGGCAGGCAAGTATTCGACAGAATGCTCAAGCGGGATACTGTCTCATGGAATGCAATGATAGTTGGTTATGGGATTCATGGCCTTGGGAAGGAAGCAATTTCACAGTTCCACAATATGCAGGCAGCTGGAATAAAGCCCGACGATGTGACTTTCATTGGCCTCTTATCTGCTTGCAGTCATTCGGGGCTTGTCACTGAAGGAAAACACTGGTTTAGTGCTATGAGTCAAGATTTCAGCATAACCCCAAGGATGGAACACTACATATGCATGGTGGATCTTCTTGCCCGAACTGGACTGTTGACCGAGGCGCACAGTTTCATTCAAAGCATGCCATTTGAGGCTGATGTTCGAGTATGGAGTGCACTACTTGCTGCATGTAGGGTTCACAATAATATTGAACTTGGGGAAGAAGTGTCCAGGAAAGTTCAAGGGCTAGGATCTGAAGGTACTGGAAATTTGGTCCTCTTATCTAATATGTACAGTTCTATTGGGAGATGGGATGATGCAGCGCATGTCAGAATTAAACAGAAGGATCAAGGCCTTAAGAAGAGTCCAGGATGTAGTTGGGTCGAGATTAATGGGGTGATTCATGGATTTCTCGGTGGAGATCAGTCCCATCCTGAATCGGCTCAGATACATGAAAAATTAGAGGAACTGCTAGTAGACATGAAAAGGATGGGATATTGTGCAGAAAATAGTTTTGTTCTCCAAGATGTTGAGGAAGAGGAGAAAGAAAGGATCCTCCTTTATCATAGTGAAAAACTAGCCATTGCTTATGGAATTCTTCATCTGAGCCCGGGGAAACCCATTTTTGTTACTAAAAATCTGCGGGTCTGTGGTGATTGCCATGCCGCTATAAAGTTCATCTCTCTTGTTACAAAGAGAGAGATAACCGTAAGAGATGTGAGTCGGTTTCATCATTTCAGTGATGGAAATTGCAGTTGTGCAGACTTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

814

Amino Acids

90.7

Weight (kDa)

7.52

Isoelectric Point (pI)

43.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	99 - 146	2.3e-10	PPR repeat family
PPR_2	PF13041	200 - 240	8.1e-07	PPR repeat family
PPR_2	PF13041	405 - 452	1.8e-07	PPR repeat family
PPR	PF01535	408 - 438	7.7e-06	PPR repeat
PPR_2	PF13041	506 - 554	2.6e-10	PPR repeat family
E_motif	PF20431	624 - 686	5.5e-18	E motif
Eplus_motif	PF20430	691 - 715	2e-07	E+ motif
DYW_deaminase	PF14432	722 - 814	1.3e-39	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16610
fragaria_vesca	FvH4_5g18140 FvH4_5g18140
malus_domestica	MD14G1243800.v1.1
prunus_persica	Prupe.5G241400_v2.0.a1 Prupe.5G241400_v2.0.a1
pyrus_communis	pycom14g20490
rosa_chinensis	RchiOBHm_Chr7g0177471
rosa_laevigata	RLG00000005535
rosa_multiflora	Rmu_co8313469.1_g000001 Rmu_sc0036713.1_g000001 Rmu_sc0036714.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275850
rosa_rugosa	Rorug06G0406200 Rorug06G0406300
rosa_samantha	Rh7AG005800 Rh7BG005700 Rh7CG006100 Rh7DG005600
rosa_wichuraiana	Rw7G000470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	179
AarI	CACCTGC	1 cut(s)	1328
AasI	GACNNNNNNGTC	2 cut(s)	27, 509
AatII	GACGTC	1 cut(s)	513
Acc16I	TGCGCA	2 cut(s)	570, 744
Acc36I	ACCTGC	1 cut(s)	1328
AccBSI	CCGCTC	1 cut(s)	692
AccI	GTMKAC	1 cut(s)	2148
AccII	CGCG	2 cut(s)	63, 878
AciI	CCGC	6 cut(s)	12, 692, 725, 1516, 2314, 2337
AclWI	GGATC	9 cut(s)	1202, 1215, 1310, 1471, 1767, 1930, 2025, 2218, 2231
AcoI	YGGCCR	1 cut(s)	1390
AcsI	RAATTY	3 cut(s)	285, 1939, 2265
AcuI	CTGAAG	2 cut(s)	1701, 1947
AcyI	GRCGYC	1 cut(s)	510
AfiI	CCNNNNNNNGG	6 cut(s)	199, 336, 775, 801, 1573, 1735
AflII	CTTAAG	1 cut(s)	2027
AflIII	ACRYGT	3 cut(s)	411, 457, 1455
AgsI	TTSAA	8 cut(s)	122, 221, 353, 680, 1404, 1808, 1883, 1913
AjiI	CACGTC	1 cut(s)	820
AjnI	CCWGG	2 cut(s)	1901, 2038
AluBI	AGCT	6 cut(s)	566, 749, 1049, 1060, 1277, 1610
AluI	AGCT	6 cut(s)	566, 749, 1049, 1060, 1277, 1610
Alw21I	GWGCWC	1 cut(s)	1849
Alw26I	GTCTC	4 cut(s)	213, 549, 1075, 1531
Alw44I	GTGCAC	1 cut(s)	1845
AlwI	GGATC	9 cut(s)	1202, 1215, 1310, 1471, 1767, 1930, 2025, 2218, 2231
Ama87I	CYCGRG	2 cut(s)	439, 2281
AoxI	GGCC	6 cut(s)	243, 1383, 1390, 1564, 1642, 2023
ApaLI	GTGCAC	1 cut(s)	1845
ApeKI	GCWGC	6 cut(s)	566, 662, 1367, 1607, 1856, 1991
ApoI	RAATTY	3 cut(s)	285, 1939, 2265
AseI	ATTAAT	1 cut(s)	2061
AspLEI	GCGC	9 cut(s)	65, 454, 571, 745, 757, 838, 941, 1795, 1996
AspS9I	GGNCC	3 cut(s)	344, 1383, 1945
AsuC2I	CCSGG	3 cut(s)	232, 2282, 2283
AsuHPI	GGTGA	4 cut(s)	668, 1009, 2080, 2336
AvaI	CYCGRG	2 cut(s)	439, 2281
AvaII	GGWCC	2 cut(s)	344, 1945
BaeGI	GKGCMC	1 cut(s)	1849
BalI	TGGCCA	1 cut(s)	1392
BamHI	GGATCC	2 cut(s)	1207, 2223
BanII	GRGCYC	2 cut(s)	501, 2282
BauI	CACGAG	1 cut(s)	1020
Bbv12I	GWGCWC	1 cut(s)	1849
BbvCI	CCTCAGC	1 cut(s)	758
BbvI	GCAGC	6 cut(s)	553, 649, 1379, 1619, 1843, 2003
BccI	CCATC	9 cut(s)	174, 368, 578, 1151, 1729, 1974, 2109, 2155, 2408
BciT130I	CCWGG	2 cut(s)	1903, 2040
BciVI	GTATCC	1 cut(s)	1513
BcnI	CCSGG	3 cut(s)	232, 2282, 2283
BcoDI	GTCTC	4 cut(s)	213, 549, 1075, 1531
BfaI	CTAG	4 cut(s)	227, 1919, 2144, 2249
BfmI	CTRYAG	1 cut(s)	663
BfoI	RGCGCY	1 cut(s)	455
BfrI	CTTAAG	1 cut(s)	2027
BfuAI	ACCTGC	1 cut(s)	1328
BfuI	GTATCC	1 cut(s)	1513
BisI	GCNGC	7 cut(s)	567, 663, 1368, 1608, 1857, 1992, 2337
BlpI	GCTNAGC	1 cut(s)	764
BlsI	GCNGC	7 cut(s)	568, 664, 1369, 1609, 1858, 1993, 2338
BmcAI	AGTACT	1 cut(s)	832
Bme1390I	CCNGG	5 cut(s)	232, 1903, 2040, 2282, 2283
Bme18I	GGWCC	2 cut(s)	344, 1945
BmeT110I	CYCGRG	2 cut(s)	439, 2281
BmgBI	CACGTC	1 cut(s)	820
BmgT120I	GGNCC	3 cut(s)	344, 1383, 1945
BmiI	GGNNCC	4 cut(s)	314, 1209, 1384, 2225
BmrFI	CCNGG	5 cut(s)	232, 1903, 2040, 2282, 2283
BmrI	ACTGGG	2 cut(s)	398, 1040
BmsI	GCATC	3 cut(s)	883, 1171, 1978
BmuI	ACTGGG	2 cut(s)	398, 1040
Bpu10I	CCTNAGC	1 cut(s)	758
Bpu1102I	GCTNAGC	1 cut(s)	764
BpuEI	CTTGAG	3 cut(s)	135, 413, 1496
BpuMI	CCSGG	3 cut(s)	232, 2282, 2283
BsaAI	YACGTR	1 cut(s)	414
BsaBI	GATNNNNATC	2 cut(s)	139, 474
BsaHI	GRCGYC	1 cut(s)	510
BsaI	GGTCTC	1 cut(s)	213
BsaJI	CCNNGG	8 cut(s)	769, 1332, 1393, 1567, 1730, 1788, 2281, 2282
BsaXI	ACNNNNNCTCC	4 cut(s)	546, 576, 796, 826
Bsc4I	CCNNNNNNNGG	6 cut(s)	199, 336, 775, 801, 1573, 1735
Bse118I	RCCGGY	2 cut(s)	1109, 1348
Bse1I	ACTGG	6 cut(s)	393, 678, 1035, 1697, 1780, 1939
Bse3DI	GCAATG	4 cut(s)	903, 978, 1545, 2253
Bse8I	GATNNNNATC	2 cut(s)	139, 474
BseBI	CCWGG	2 cut(s)	1903, 2040
BseDI	CCNNGG	8 cut(s)	769, 1332, 1393, 1567, 1730, 1788, 2281, 2282
BseGI	GGATG	6 cut(s)	1143, 1740, 1990, 2048, 2101, 2166
BseJI	GATNNNNATC	2 cut(s)	139, 474
BseLI	CCNNNNNNNGG	6 cut(s)	199, 336, 775, 801, 1573, 1735
BseMI	GCAATG	4 cut(s)	903, 978, 1545, 2253
BseMII	CTCAG	6 cut(s)	749, 755, 1061, 1257, 2129, 2267
BseNI	ACTGG	6 cut(s)	393, 678, 1035, 1697, 1780, 1939
BseRI	GAGGAG	4 cut(s)	814, 817, 895, 2225
BseSI	GKGCMC	1 cut(s)	1849
BseXI	GCAGC	6 cut(s)	553, 649, 1379, 1619, 1843, 2003
BseYI	CCCAGC	1 cut(s)	629
BsgI	GTGCAG	2 cut(s)	1274, 2193
Bsh1236I	CGCG	2 cut(s)	63, 878
Bsh1285I	CGRYCG	1 cut(s)	16
BshFI	GGCC	6 cut(s)	245, 1385, 1392, 1566, 1644, 2025
BsiEI	CGRYCG	1 cut(s)	16
BsiHKAI	GWGCWC	1 cut(s)	1849
BsiHKCI	CYCGRG	2 cut(s)	439, 2281
BsiSI	CCGG	4 cut(s)	232, 1110, 1349, 2282
BslFI	GGGAC	1 cut(s)	2083
BslI	CCNNNNNNNGG	6 cut(s)	199, 336, 775, 801, 1573, 1735
BsmAI	GTCTC	4 cut(s)	213, 549, 1075, 1531
BsmBI	CGTCTC	1 cut(s)	1075
BsmFI	GGGAC	1 cut(s)	2083
BsmI	GAATGC	6 cut(s)	129, 622, 712, 1184, 1512, 1540
BsnI	GGCC	6 cut(s)	245, 1385, 1392, 1566, 1644, 2025
Bso31I	GGTCTC	1 cut(s)	213
BsoBI	CYCGRG	2 cut(s)	439, 2281
Bsp1286I	GDGCHC	3 cut(s)	501, 1849, 2282
Bsp1407I	TGTACA	1 cut(s)	1962
Bsp1720I	GCTNAGC	1 cut(s)	764
Bsp19I	CCATGG	1 cut(s)	1332
BspACI	CCGC	6 cut(s)	12, 692, 725, 1516, 2314, 2337
BspANI	GGCC	6 cut(s)	245, 1385, 1392, 1566, 1644, 2025
BspCNI	CTCAG	6 cut(s)	750, 756, 1062, 1256, 2128, 2268
BspFNI	CGCG	2 cut(s)	63, 878
BspLI	GGNNCC	4 cut(s)	314, 1209, 1384, 2225
BspMAI	CTGCAG	1 cut(s)	667
BspMI	ACCTGC	1 cut(s)	1328
BspPI	GGATC	9 cut(s)	1202, 1215, 1310, 1471, 1767, 1930, 2025, 2218, 2231
BspTI	CTTAAG	1 cut(s)	2027
BspTNI	GGTCTC	1 cut(s)	213
BsrBI	CCGCTC	1 cut(s)	692
BsrDI	GCAATG	4 cut(s)	903, 978, 1545, 2253
BsrFI	RCCGGY	2 cut(s)	1109, 1348
BsrGI	TGTACA	1 cut(s)	1962
BsrI	ACTGG	6 cut(s)	393, 678, 1035, 1697, 1780, 1939
BssAI	RCCGGY	2 cut(s)	1109, 1348
BssECI	CCNNGG	8 cut(s)	769, 1332, 1393, 1567, 1730, 1788, 2281, 2282
BssNI	GRCGYC	1 cut(s)	510
BssSI	CACGAG	1 cut(s)	1020
BssT1I	CCWWGG	4 cut(s)	769, 1332, 1567, 1730
Bst2BI	CACGAG	1 cut(s)	1020
Bst2UI	CCWGG	2 cut(s)	1903, 2040
Bst6I	CTCTTC	4 cut(s)	93, 216, 2027, 2202
BstACI	GRCGYC	1 cut(s)	510
BstAFI	CTTAAG	1 cut(s)	2027
BstAPI	GCANNNNNTGC	1 cut(s)	1853
BstAUI	TGTACA	1 cut(s)	1962
BstBAI	YACGTR	1 cut(s)	414
BstDEI	CTNAG	7 cut(s)	758, 764, 827, 1070, 1243, 2115, 2276
BstDSI	CCRYGG	2 cut(s)	1332, 1393
BstENI	CCTNNNNNAGG	1 cut(s)	1571
BstF5I	GGATG	6 cut(s)	1143, 1740, 1990, 2048, 2101, 2166
BstFNI	CGCG	2 cut(s)	63, 878
BstH2I	RGCGCY	1 cut(s)	455
BstHHI	GCGC	9 cut(s)	65, 454, 571, 745, 757, 838, 941, 1795, 1996
BstMAI	GTCTC	4 cut(s)	213, 549, 1075, 1531
BstMCI	CGRYCG	1 cut(s)	16
BstMWI	GCNNNNNNNGC	8 cut(s)	617, 626, 698, 707, 1106, 1274, 1334, 1853
BstNI	CCWGG	2 cut(s)	1903, 2040
BstNSI	RCATGY	8 cut(s)	382, 438, 461, 485, 1459, 1816, 1863, 2000
BstSCI	CCNGG	5 cut(s)	230, 1901, 2038, 2280, 2281
BstSFI	CTRYAG	1 cut(s)	663
BstSLI	GKGCMC	1 cut(s)	1849
BstUI	CGCG	2 cut(s)	63, 878
BstV1I	GCAGC	6 cut(s)	553, 649, 1379, 1619, 1843, 2003
BstX2I	RGATCY	5 cut(s)	1207, 1476, 1759, 1922, 2223
BstYI	RGATCY	5 cut(s)	1207, 1476, 1759, 1922, 2223
BsuI	GTATCC	1 cut(s)	1513
BsuRI	GGCC	6 cut(s)	245, 1385, 1392, 1566, 1644, 2025
BtgI	CCRYGG	2 cut(s)	1332, 1393
BtgZI	GCGATG	1 cut(s)	944
BtrI	CACGTC	1 cut(s)	820
BtsCI	GGATG	6 cut(s)	1143, 1740, 1990, 2048, 2101, 2166
BtsI	GCAGTG	1 cut(s)	522
BtsIMutI	CAGTG	6 cut(s)	522, 869, 1028, 1677, 1690, 2416
BveI	ACCTGC	1 cut(s)	1328
CfoI	GCGC	9 cut(s)	65, 454, 571, 745, 757, 838, 941, 1795, 1996
Cfr10I	RCCGGY	2 cut(s)	1109, 1348
Cfr13I	GGNCC	3 cut(s)	344, 1383, 1945
Cfr9I	CCCGGG	1 cut(s)	2281
CpoI	CGGWCCG	1 cut(s)	344
CseI	GACGC	1 cut(s)	668
CspI	CGGWCCG	1 cut(s)	344
DdeI	CTNAG	7 cut(s)	758, 764, 827, 1070, 1243, 2115, 2276
DraI	TTTAAA	1 cut(s)	1122
DrdI	GACNNNNNNGTC	2 cut(s)	27, 509
DseDI	GACNNNNNNGTC	2 cut(s)	27, 509
EaeI	YGGCCR	1 cut(s)	1390
Eam1104I	CTCTTC	4 cut(s)	93, 216, 2027, 2202
EarI	CTCTTC	4 cut(s)	93, 216, 2027, 2202
Eco130I	CCWWGG	4 cut(s)	769, 1332, 1567, 1730
Eco147I	AGGCCT	1 cut(s)	2025
Eco24I	GRGCYC	2 cut(s)	501, 2282
Eco31I	GGTCTC	1 cut(s)	213
Eco47I	GGWCC	2 cut(s)	344, 1945
Eco57I	CTGAAG	2 cut(s)	1701, 1947
Eco88I	CYCGRG	2 cut(s)	439, 2281
EcoNI	CCTNNNNNAGG	1 cut(s)	1571
EcoO109I	RGGNCCY	1 cut(s)	1383
EcoRI	GAATTC	1 cut(s)	2265
EcoRII	CCWGG	2 cut(s)	1901, 2038
EcoT14I	CCWWGG	4 cut(s)	769, 1332, 1567, 1730
EcoT22I	ATGCAT	3 cut(s)	337, 1186, 1754
EcoT38I	GRGCYC	2 cut(s)	501, 2282
ErhI	CCWWGG	4 cut(s)	769, 1332, 1567, 1730
Esp3I	CGTCTC	1 cut(s)	1075
FalI	AAGNNNNNCTT	2 cut(s)	1266, 1298
FaqI	GGGAC	1 cut(s)	2083
FauI	CCCGC	3 cut(s)	685, 1509, 2307
FauNDI	CATATG	2 cut(s)	943, 1748
FblI	GTMKAC	1 cut(s)	2148
Fnu4HI	GCNGC	7 cut(s)	567, 663, 1368, 1608, 1857, 1992, 2337
FokI	GGATG	6 cut(s)	1130, 1747, 1997, 2055, 2088, 2173
FriOI	GRGCYC	2 cut(s)	501, 2282
Fsp4HI	GCNGC	7 cut(s)	567, 663, 1368, 1608, 1857, 1992, 2337
FspBI	CTAG	4 cut(s)	227, 1919, 2144, 2249
FspI	TGCGCA	2 cut(s)	570, 744
GlaI	GCGC	9 cut(s)	64, 453, 570, 744, 756, 837, 940, 1794, 1995
GluI	GCNGC	7 cut(s)	567, 663, 1368, 1608, 1857, 1992, 2337
GsaI	CCCAGC	1 cut(s)	633
HaeII	RGCGCY	1 cut(s)	455
HaeIII	GGCC	6 cut(s)	245, 1385, 1392, 1566, 1644, 2025
HapII	CCGG	4 cut(s)	232, 1110, 1349, 2282
HgaI	GACGC	1 cut(s)	668
HhaI	GCGC	9 cut(s)	65, 454, 571, 745, 757, 838, 941, 1795, 1996
Hin1I	GRCGYC	1 cut(s)	510
Hin6I	GCGC	9 cut(s)	63, 452, 569, 743, 755, 836, 939, 1793, 1994
HinP1I	GCGC	9 cut(s)	63, 452, 569, 743, 755, 836, 939, 1793, 1994
HincII	GTYRAC	1 cut(s)	1785
HindII	GTYRAC	1 cut(s)	1785
HindIII	AAGCTT	1 cut(s)	1275
HpaII	CCGG	4 cut(s)	232, 1110, 1349, 2282
HphI	GGTGA	4 cut(s)	668, 1009, 2080, 2336
Hpy166II	GTNNAC	7 cut(s)	411, 874, 1358, 1785, 1847, 1870, 2149
Hpy188I	TCNGA	7 cut(s)	508, 1046, 1071, 1927, 2003, 2118, 2277
Hpy188III	TCNNGA	6 cut(s)	467, 907, 1319, 1712, 2056, 2105
Hpy8I	GTNNAC	7 cut(s)	411, 874, 1358, 1785, 1847, 1870, 2149
Hpy99I	CGWCG	3 cut(s)	33, 284, 1628
HpyAV	CCTTC	6 cut(s)	82, 769, 1567, 1676, 1922, 2008
HpyCH4IV	ACGT	3 cut(s)	413, 510, 819
HpyF10VI	GCNNNNNNNGC	8 cut(s)	617, 626, 698, 707, 1106, 1274, 1334, 1853
HpyF3I	CTNAG	7 cut(s)	758, 764, 827, 1070, 1243, 2115, 2276
HpySE526I	ACGT	3 cut(s)	413, 510, 819
Hsp92I	GRCGYC	1 cut(s)	510
HspAI	GCGC	9 cut(s)	63, 452, 569, 743, 755, 836, 939, 1793, 1994
KroI	GCCGGC	1 cut(s)	1348
KroNI	GCCGGC	1 cut(s)	1350
LmnI	GCTCC	1 cut(s)	1035
Lsp1109I	GCAGC	6 cut(s)	553, 649, 1379, 1619, 1843, 2003
LweI	GCATC	3 cut(s)	883, 1171, 1978
MaeI	CTAG	4 cut(s)	227, 1919, 2144, 2249
MaeII	ACGT	3 cut(s)	413, 510, 819
MbiI	CCGCTC	1 cut(s)	692
MboII	GAAGA	9 cut(s)	80, 203, 722, 1486, 1754, 1904, 2044, 2219, 2261
MfeI	CAATTG	1 cut(s)	1404
MflI	RGATCY	5 cut(s)	1207, 1476, 1759, 1922, 2223
MhlI	GDGCHC	3 cut(s)	501, 1849, 2282
MlsI	TGGCCA	1 cut(s)	1392
MluNI	TGGCCA	1 cut(s)	1392
MlyI	GAGTC	5 cut(s)	15, 497, 1717, 2044, 2401
MmeI	TCCRAC	1 cut(s)	902
Mox20I	TGGCCA	1 cut(s)	1392
Mph1103I	ATGCAT	3 cut(s)	337, 1186, 1754
MroNI	GCCGGC	1 cut(s)	1348
MscI	TGGCCA	1 cut(s)	1392
MseI	TTAA	7 cut(s)	396, 1104, 1121, 1448, 2007, 2028, 2061
MslI	CAYNNNNRTG	4 cut(s)	480, 1095, 1751, 2409
Msp20I	TGGCCA	1 cut(s)	1392
MspA1I	CMGCKG	1 cut(s)	1610
MspCI	CTTAAG	1 cut(s)	2027
MspI	CCGG	4 cut(s)	232, 1110, 1349, 2282
MspR9I	CCNGG	5 cut(s)	232, 1903, 2040, 2282, 2283
MunI	CAATTG	1 cut(s)	1404
Mva1269I	GAATGC	6 cut(s)	129, 622, 712, 1184, 1512, 1540
MvaI	CCWGG	2 cut(s)	1903, 2040
MvnI	CGCG	2 cut(s)	63, 878
MwoI	GCNNNNNNNGC	8 cut(s)	617, 626, 698, 707, 1106, 1274, 1334, 1853
NaeI	GCCGGC	1 cut(s)	1350
NciI	CCSGG	3 cut(s)	232, 2282, 2283
NcoI	CCATGG	1 cut(s)	1332
NdeI	CATATG	2 cut(s)	943, 1748
NgoMIV	GCCGGC	1 cut(s)	1348
NlaIV	GGNNCC	4 cut(s)	314, 1209, 1384, 2225
NmeAIII	GCCGAG	1 cut(s)	296
NmuCI	GTSAC	3 cut(s)	656, 1630, 1675
NsbI	TGCGCA	2 cut(s)	570, 744
NsiI	ATGCAT	3 cut(s)	337, 1186, 1754
NspI	RCATGY	8 cut(s)	382, 438, 461, 485, 1459, 1816, 1863, 2000
PaeI	GCATGC	3 cut(s)	382, 438, 1816
PaqCI	CACCTGC	1 cut(s)	1328
PceI	AGGCCT	1 cut(s)	2025
PciI	ACATGT	2 cut(s)	457, 1455
PcsI	WCGNNNNNNNCGW	2 cut(s)	390, 507
PctI	GAATGC	6 cut(s)	129, 622, 712, 1184, 1512, 1540
PdiI	GCCGGC	1 cut(s)	1350
PfeI	GAWTC	5 cut(s)	885, 956, 1558, 2071, 2108
PfoI	TCCNGGA	2 cut(s)	1901, 2038
PkrI	GCNGC	7 cut(s)	568, 664, 1369, 1609, 1858, 1993, 2338
PleI	GAGTC	5 cut(s)	15, 497, 1716, 2043, 2400
PpsI	GAGTC	5 cut(s)	15, 497, 1716, 2043, 2400
Ppu21I	YACGTR	1 cut(s)	414
PscI	ACATGT	2 cut(s)	457, 1455
PshBI	ATTAAT	1 cut(s)	2061
PsiI	TTATAA	1 cut(s)	179
Psp6I	CCWGG	2 cut(s)	1901, 2038
PspFI	CCCAGC	1 cut(s)	629
PspGI	CCWGG	2 cut(s)	1901, 2038
PspN4I	GGNNCC	4 cut(s)	314, 1209, 1384, 2225
PspPI	GGNCC	3 cut(s)	344, 1383, 1945
PstI	CTGCAG	1 cut(s)	667
PsuI	RGATCY	5 cut(s)	1207, 1476, 1759, 1922, 2223
PvuII	CAGCTG	1 cut(s)	1610
RseI	CAYNNNNRTG	4 cut(s)	480, 1095, 1751, 2409
Rsr2I	CGGWCCG	1 cut(s)	344
RsrII	CGGWCCG	1 cut(s)	344
SaqAI	TTAA	7 cut(s)	396, 1104, 1121, 1448, 2007, 2028, 2061
SatI	GCNGC	7 cut(s)	567, 663, 1368, 1608, 1857, 1992, 2337
Sau96I	GGNCC	3 cut(s)	344, 1383, 1945
ScaI	AGTACT	1 cut(s)	832
SchI	GAGTC	5 cut(s)	15, 497, 1717, 2044, 2401
ScrFI	CCNGG	5 cut(s)	232, 1903, 2040, 2282, 2283
SduI	GDGCHC	3 cut(s)	501, 1849, 2282
SfaNI	GCATC	3 cut(s)	883, 1171, 1978
SfcI	CTRYAG	1 cut(s)	663
SinI	GGWCC	2 cut(s)	344, 1945
SmaI	CCCGGG	1 cut(s)	2283
SmiI	ATTTAAAT	1 cut(s)	1122
SmiMI	CAYNNNNRTG	4 cut(s)	480, 1095, 1751, 2409
SmlI	CTYRAG	4 cut(s)	150, 428, 1511, 2027
SmoI	CTYRAG	4 cut(s)	150, 428, 1511, 2027
SphI	GCATGC	3 cut(s)	382, 438, 1816
SseBI	AGGCCT	1 cut(s)	2025
SsiI	CCGC	6 cut(s)	12, 692, 725, 1516, 2314, 2337
SspI	AATATT	1 cut(s)	1879
SspMI	CTAG	4 cut(s)	227, 1919, 2144, 2249
StuI	AGGCCT	1 cut(s)	2025
StyD4I	CCNGG	5 cut(s)	230, 1901, 2038, 2280, 2281
StyI	CCWWGG	4 cut(s)	769, 1332, 1567, 1730
SwaI	ATTTAAAT	1 cut(s)	1122
TaiI	ACGT	3 cut(s)	416, 513, 822
TaqII	GACCGA	1 cut(s)	1802
TatI	WGTACW	6 cut(s)	369, 408, 830, 1087, 1458, 1962
TauI	GCSGC	1 cut(s)	2339
TfiI	GAWTC	5 cut(s)	885, 956, 1558, 2071, 2108
Tru1I	TTAA	7 cut(s)	396, 1104, 1121, 1448, 2007, 2028, 2061
Tru9I	TTAA	7 cut(s)	396, 1104, 1121, 1448, 2007, 2028, 2061
TscAI	CASTG	6 cut(s)	529, 869, 1035, 1684, 1697, 2416
TseFI	GTSAC	3 cut(s)	656, 1630, 1675
TseI	GCWGC	6 cut(s)	566, 662, 1367, 1607, 1856, 1991
Tsp45I	GTSAC	3 cut(s)	656, 1630, 1675
TspGWI	ACGGA	1 cut(s)	357
TspMI	CCCGGG	1 cut(s)	2281
TspRI	CASTG	6 cut(s)	529, 869, 1035, 1684, 1697, 2416
Vha464I	CTTAAG	1 cut(s)	2027
VneI	GTGCAC	1 cut(s)	1845
VpaK11BI	GGWCC	2 cut(s)	344, 1945
VspI	ATTAAT	1 cut(s)	2061
XagI	CCTNNNNNAGG	1 cut(s)	1571
XapI	RAATTY	3 cut(s)	285, 1939, 2265
XceI	RCATGY	8 cut(s)	382, 438, 461, 485, 1459, 1816, 1863, 2000
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2046
XmaI	CCCGGG	1 cut(s)	2281
XmiI	GTMKAC	1 cut(s)	2148
XspI	CTAG	4 cut(s)	227, 1919, 2144, 2249
ZraI	GACGTC	1 cut(s)	511
ZrmI	AGTACT	1 cut(s)	832
Zsp2I	ATGCAT	3 cut(s)	337, 1186, 1754

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.