Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011185

Physical Location & Seq

Genomic Coordinates Forward (+)

5705541 .. 5707084

Gene Structure 1544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G16770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGTGTGGCGGTGCTATTATTTCCGATTATGCCCCTCTCGTCACCAAGGCCAAGGGCCGTAAACTCACGGCTGAGGAACTCTGGTCAGAGCTCGATGCTTCCGCCGCCGACGACTTCTGGGGTTTCTATTCCACCTCCAAACTCCATCCCACCAACCAAGTTAACGTGAAAGAGGAGGCAGTGAAGAAGGAGCAGGCAACAGAGCCGGGGAAACGGAGGAAGAGGAAGAATGTTTATAGAGGGATACGTAAGCGTCCATGGGGAAAATGGGCGGCTGAGATTCGAGATCCACGAAAAGGTGTTAGAGTTTGGCTTGGTACGTTCAACACGGCGGAGGAAGCTGCCATGGCTTATGATGTTGCGGCCAAGCAGATCCGTGGTGATAAAGCCAAGCTCAACTTCCCAGATCTGCACCATCCTCCTCCTCCTAATTATACTCCTCCGCCGTCATCGCCACGATCAACCGATCAGCCTCCGGCGAAGAAGGTCTGCGTTGTCTCTCAGAGTGAGAGCGAGTTAAGTCAGCCGAGTTTCCCGGTGGAGTGTATAGGATTTGGAAATGGGGACGAGTTTCAGAACCTGAGTTACGGATTTGAGCCGGATTATGATCTGAAACAGCAGATATCGAGCTTGGAATCGTTCCTTGAGCTGGACGGTAACACGGCGGAGCAACCGAGTCAGCTTGATGAGTCCGTTTCCGAGGTGGATATGTGGATGCTTGATGATGTCATTGCGTCGTATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009753 GO:0009755 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010286 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032870 GO:0035556 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071944 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

248

Amino Acids

27.76

Weight (kDa)

5.21

Isoelectric Point (pI)

49.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	78 - 127	2.3e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16770
fragaria_vesca	FvH4_4g18780
malus_domestica	MD13G1163300.v1.1 MD16G1162800.v1.1 MD16G1162900.v1.1
prunus_persica	Prupe.1G130300_v2.0.a1 Prupe.1G130300_v2.0.a1
pyrus_communis	pycom13g13920 pycom16g13800
rosa_chinensis	RchiOBHm_Chr4g0423581
rosa_laevigata	RLG00000007545
rosa_multiflora	Rmu_sc0000464.1_g000024 Rmu_sc0004342.1_g000003
rosa_roxburghii	Rroxscaffold_5G00365800
rosa_rugosa	Rorug04G0188800
rosa_samantha	Rh4AG248300 Rh4BG253500 Rh4CG261600 Rh4DG248800
rosa_wichuraiana	Rw4G021270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	8 cut(s)	9, 102, 105, 272, 332, 362, 443, 665
AclWI	GGATC	2 cut(s)	281, 367
AcoI	YGGCCR	1 cut(s)	363
AfaI	GTAC	1 cut(s)	319
AfiI	CCNNNNNNNGG	2 cut(s)	296, 649
AgsI	TTSAA	1 cut(s)	325
AjuI	GAANNNNNNNTTGG	2 cut(s)	383, 415
AluBI	AGCT	6 cut(s)	91, 341, 394, 630, 649, 682
AluI	AGCT	6 cut(s)	91, 341, 394, 630, 649, 682
Alw21I	GWGCWC	1 cut(s)	93
Alw26I	GTCTC	1 cut(s)	502
AlwI	GGATC	2 cut(s)	281, 367
AlwNI	CAGNNNCTG	1 cut(s)	580
AoxI	GGCC	3 cut(s)	48, 55, 363
ApeKI	GCWGC	1 cut(s)	341
AspS9I	GGNCC	1 cut(s)	55
AsuC2I	CCSGG	2 cut(s)	207, 536
AsuHPI	GGTGA	2 cut(s)	34, 392
BanII	GRGCYC	1 cut(s)	93
Bbv12I	GWGCWC	1 cut(s)	93
BbvCI	CCTCAGC	1 cut(s)	72
BbvI	GCAGC	1 cut(s)	328
BccI	CCATC	2 cut(s)	153, 423
BceAI	ACGGC	5 cut(s)	42, 84, 345, 430, 678
BciVI	GTATCC	1 cut(s)	237
BcnI	CCSGG	2 cut(s)	207, 536
BcoDI	GTCTC	1 cut(s)	502
BfuI	GTATCC	1 cut(s)	237
BglII	AGATCT	1 cut(s)	406
BisI	GCNGC	4 cut(s)	105, 273, 342, 363
BlsI	GCNGC	4 cut(s)	106, 274, 343, 364
Bme1390I	CCNGG	2 cut(s)	207, 536
BmgT120I	GGNCC	1 cut(s)	55
BmrFI	CCNGG	2 cut(s)	207, 536
BmsI	GCATC	2 cut(s)	85, 705
Bpu10I	CCTNAGC	1 cut(s)	72
BpuEI	CTTGAG	1 cut(s)	665
BpuMI	CCSGG	2 cut(s)	207, 536
BsaAI	YACGTR	1 cut(s)	248
BsaBI	GATNNNNATC	1 cut(s)	606
BsaJI	CCNNGG	7 cut(s)	45, 51, 206, 257, 345, 376, 699
Bsc4I	CCNNNNNNNGG	2 cut(s)	296, 649
Bse3DI	GCAATG	1 cut(s)	729
Bse8I	GATNNNNATC	1 cut(s)	606
BseDI	CCNNGG	7 cut(s)	45, 51, 206, 257, 345, 376, 699
BseGI	GGATG	3 cut(s)	145, 415, 720
BseJI	GATNNNNATC	1 cut(s)	606
BseLI	CCNNNNNNNGG	2 cut(s)	296, 649
BseMI	GCAATG	1 cut(s)	729
BseMII	CTCAG	4 cut(s)	63, 267, 515, 572
BseRI	GAGGAG	4 cut(s)	188, 411, 414, 429
BseXI	GCAGC	1 cut(s)	328
BsgI	GTGCAG	1 cut(s)	395
BshFI	GGCC	3 cut(s)	50, 57, 365
BsiHKAI	GWGCWC	1 cut(s)	93
BsiSI	CCGG	4 cut(s)	206, 476, 536, 599
BslFI	GGGAC	1 cut(s)	578
BslI	CCNNNNNNNGG	2 cut(s)	296, 649
BsmAI	GTCTC	1 cut(s)	502
BsmFI	GGGAC	1 cut(s)	578
BsnI	GGCC	3 cut(s)	50, 57, 365
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp143I	GATC	6 cut(s)	286, 372, 406, 458, 466, 607
Bsp19I	CCATGG	2 cut(s)	257, 345
BspACI	CCGC	8 cut(s)	9, 102, 105, 272, 332, 362, 443, 665
BspANI	GGCC	3 cut(s)	50, 57, 365
BspCNI	CTCAG	4 cut(s)	64, 268, 514, 573
BspPI	GGATC	2 cut(s)	281, 367
BsrDI	GCAATG	1 cut(s)	729
BssECI	CCNNGG	7 cut(s)	45, 51, 206, 257, 345, 376, 699
BssMI	GATC	6 cut(s)	286, 372, 406, 458, 466, 607
BssT1I	CCWWGG	4 cut(s)	45, 51, 257, 345
Bst4CI	ACNGT	1 cut(s)	656
Bst6I	CTCTTC	1 cut(s)	215
BstBAI	YACGTR	1 cut(s)	248
BstC8I	GCNNGC	1 cut(s)	195
BstDEI	CTNAG	4 cut(s)	72, 276, 501, 581
BstDSI	CCRYGG	3 cut(s)	257, 345, 376
BstF5I	GGATG	3 cut(s)	145, 415, 720
BstKTI	GATC	6 cut(s)	289, 375, 409, 461, 469, 610
BstMAI	GTCTC	1 cut(s)	502
BstMBI	GATC	6 cut(s)	286, 372, 406, 458, 466, 607
BstMWI	GCNNNNNNNGC	4 cut(s)	104, 338, 347, 451
BstSCI	CCNGG	2 cut(s)	205, 534
BstSNI	TACGTA	1 cut(s)	248
BstV1I	GCAGC	1 cut(s)	328
BstX2I	RGATCY	3 cut(s)	286, 372, 406
BstYI	RGATCY	3 cut(s)	286, 372, 406
BsuI	GTATCC	1 cut(s)	237
BsuRI	GGCC	3 cut(s)	50, 57, 365
BtgI	CCRYGG	3 cut(s)	257, 345, 376
BtgZI	GCGATG	1 cut(s)	435
BtsCI	GGATG	3 cut(s)	145, 415, 720
BtsI	GCAGTG	1 cut(s)	186
BtsIMutI	CAGTG	1 cut(s)	186
Cac8I	GCNNGC	1 cut(s)	195
CaiI	CAGNNNCTG	1 cut(s)	580
Cfr13I	GGNCC	1 cut(s)	55
CseI	GACGC	2 cut(s)	242, 723
Csp6I	GTAC	1 cut(s)	318
CviAII	CATG	2 cut(s)	258, 346
CviQI	GTAC	1 cut(s)	318
DdeI	CTNAG	4 cut(s)	72, 276, 501, 581
DpnI	GATC	6 cut(s)	288, 374, 408, 460, 468, 609
DpnII	GATC	6 cut(s)	286, 372, 406, 458, 466, 607
EaeI	YGGCCR	1 cut(s)	363
Eam1104I	CTCTTC	1 cut(s)	215
EarI	CTCTTC	1 cut(s)	215
EciI	GGCGGA	4 cut(s)	91, 347, 432, 680
Ecl136II	GAGCTC	1 cut(s)	91
Eco105I	TACGTA	1 cut(s)	248
Eco130I	CCWWGG	4 cut(s)	45, 51, 257, 345
Eco24I	GRGCYC	1 cut(s)	93
Eco32I	GATATC	1 cut(s)	624
Eco53kI	GAGCTC	1 cut(s)	91
EcoICRI	GAGCTC	1 cut(s)	91
EcoRV	GATATC	1 cut(s)	624
EcoT14I	CCWWGG	4 cut(s)	45, 51, 257, 345
EcoT38I	GRGCYC	1 cut(s)	93
ErhI	CCWWGG	4 cut(s)	45, 51, 257, 345
FaeI	CATG	2 cut(s)	261, 349
FalI	AAGNNNNNCTT	2 cut(s)	383, 415
FaqI	GGGAC	1 cut(s)	578
FatI	CATG	2 cut(s)	257, 345
Fnu4HI	GCNGC	4 cut(s)	105, 273, 342, 363
FokI	GGATG	3 cut(s)	132, 402, 727
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	4 cut(s)	105, 273, 342, 363
GluI	GCNGC	4 cut(s)	105, 273, 342, 363
HaeIII	GGCC	3 cut(s)	50, 57, 365
HapII	CCGG	4 cut(s)	206, 476, 536, 599
HgaI	GACGC	2 cut(s)	242, 723
Hin1II	CATG	2 cut(s)	261, 349
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HinfI	GANTC	4 cut(s)	280, 635, 676, 689
HpaI	GTTAAC	1 cut(s)	163
HpaII	CCGG	4 cut(s)	206, 476, 536, 599
HphI	GGTGA	2 cut(s)	34, 392
Hpy166II	GTNNAC	2 cut(s)	62, 163
Hpy188I	TCNGA	6 cut(s)	25, 88, 504, 576, 612, 700
Hpy188III	TCNNGA	1 cut(s)	284
Hpy8I	GTNNAC	2 cut(s)	62, 163
Hpy99I	CGWCG	2 cut(s)	113, 739
HpyAV	CCTTC	2 cut(s)	181, 478
HpyCH4III	ACNGT	1 cut(s)	656
HpyCH4IV	ACGT	3 cut(s)	165, 247, 320
HpyCH4V	TGCA	1 cut(s)	412
HpyF10VI	GCNNNNNNNGC	4 cut(s)	104, 338, 347, 451
HpyF3I	CTNAG	4 cut(s)	72, 276, 501, 581
HpySE526I	ACGT	3 cut(s)	165, 247, 320
Hsp92II	CATG	2 cut(s)	261, 349
KspAI	GTTAAC	1 cut(s)	163
Kzo9I	GATC	6 cut(s)	286, 372, 406, 458, 466, 607
LmnI	GCTCC	2 cut(s)	190, 667
Lsp1109I	GCAGC	1 cut(s)	328
LweI	GCATC	2 cut(s)	85, 705
MaeII	ACGT	3 cut(s)	165, 247, 320
MaeIII	GTNAC	3 cut(s)	40, 584, 656
MalI	GATC	6 cut(s)	288, 374, 408, 460, 468, 609
MboI	GATC	6 cut(s)	286, 372, 406, 458, 466, 607
MboII	GAAGA	4 cut(s)	196, 232, 238, 493
MflI	RGATCY	3 cut(s)	286, 372, 406
MhlI	GDGCHC	1 cut(s)	93
MluCI	AATT	1 cut(s)	430
MlyI	GAGTC	2 cut(s)	685, 698
MseI	TTAA	2 cut(s)	162, 518
MspI	CCGG	4 cut(s)	206, 476, 536, 599
MspR9I	CCNGG	2 cut(s)	207, 536
MwoI	GCNNNNNNNGC	4 cut(s)	104, 338, 347, 451
NciI	CCSGG	2 cut(s)	207, 536
NcoI	CCATGG	2 cut(s)	257, 345
NdeII	GATC	6 cut(s)	286, 372, 406, 458, 466, 607
NlaIII	CATG	2 cut(s)	261, 349
NmeAIII	GCCGAG	1 cut(s)	552
NmuCI	GTSAC	1 cut(s)	40
PcsI	WCGNNNNNNNCGW	1 cut(s)	289
PfeI	GAWTC	2 cut(s)	280, 635
PkrI	GCNGC	4 cut(s)	106, 274, 343, 364
PleI	GAGTC	2 cut(s)	684, 697
PpsI	GAGTC	2 cut(s)	684, 697
Ppu21I	YACGTR	1 cut(s)	248
Psp124BI	GAGCTC	1 cut(s)	93
PspPI	GGNCC	1 cut(s)	55
PsrI	GAACNNNNNNTAC	2 cut(s)	569, 601
PstNI	CAGNNNCTG	1 cut(s)	580
PsuI	RGATCY	3 cut(s)	286, 372, 406
RsaI	GTAC	1 cut(s)	319
RsaNI	GTAC	1 cut(s)	318
SacI	GAGCTC	1 cut(s)	93
SaqAI	TTAA	2 cut(s)	162, 518
SatI	GCNGC	4 cut(s)	105, 273, 342, 363
Sau3AI	GATC	6 cut(s)	286, 372, 406, 458, 466, 607
Sau96I	GGNCC	1 cut(s)	55
SchI	GAGTC	2 cut(s)	685, 698
ScrFI	CCNGG	2 cut(s)	207, 536
SduI	GDGCHC	1 cut(s)	93
SfaNI	GCATC	2 cut(s)	85, 705
SmlI	CTYRAG	1 cut(s)	644
SmoI	CTYRAG	1 cut(s)	644
SnaBI	TACGTA	1 cut(s)	248
Sse9I	AATT	1 cut(s)	430
SsiI	CCGC	8 cut(s)	9, 102, 105, 272, 332, 362, 443, 665
SstI	GAGCTC	1 cut(s)	93
StyD4I	CCNGG	2 cut(s)	205, 534
StyI	CCWWGG	4 cut(s)	45, 51, 257, 345
TaaI	ACNGT	1 cut(s)	656
TaiI	ACGT	3 cut(s)	168, 250, 323
TaqI	TCGA	3 cut(s)	93, 283, 626
TasI	AATT	1 cut(s)	430
TauI	GCSGC	3 cut(s)	107, 275, 365
TfiI	GAWTC	2 cut(s)	280, 635
Tru1I	TTAA	2 cut(s)	162, 518
Tru9I	TTAA	2 cut(s)	162, 518
TscAI	CASTG	1 cut(s)	186
TseFI	GTSAC	1 cut(s)	40
TseI	GCWGC	1 cut(s)	341
Tsp45I	GTSAC	1 cut(s)	40
TspGWI	ACGGA	4 cut(s)	229, 365, 603, 682
TspRI	CASTG	1 cut(s)	186
XcmI	CCANNNNNNNNNTGG	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.