Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0011185

Physical Location & Seq

Genomic Coordinates Reverse (-)

13346948 .. 13348949

Gene Structure 2002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1162900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGTGTGGTGGTGCTATCATTTCCGACTTCATCGCCGCCAAGCGTGGCCGGAAGCTGACGGAGAAGGACCTCTGGTCGGAGCTTGACACCATCTCTGACCTCCTCGGCATAGACCACTCCAACAGCATCAACAAACAGCCTGAGGATTACAAGGTGGTCCAGAAGCCCAAACCATCAGTCACCAAAGAACTTCGACAAGTGATGCGAAGCCCAAGAAGGCCACCGGGGCAGCTGCCGCTGCTGCTGCAGAAGGCAAAGAGAGTGAGGAAAAATGTGTACAGAGGAATAAGGCAGAGGCCGTGGGGCAAATGGGCGGCTGAGATTCGCGACCCCCGCAAAGGCGTCCGAGTCTGGCTCGGCACCTACAACACCGCCGAGGAAGCCGCCCGCGCCTACGACGAAGCTGCCGTGCGCATCCGCGGCGACAAGGCCAAGCTCAACTTTTCACAACCACCACCCTCTTCACTGCTTCCACCTCTGGCTCCGGCTACGCCGCCGCCGACAAAGAAGCGGTGCATTGTTGCTGAATCAACTCGGGTGGAGTCGACTCAGCCGAGTTTCCACACCGGTTCTTACTATTATGATACATTTTATCAGGGTGACGGTGATATGTATGCTAAGAATGAGGTGGCGGATGGTGACGGAGGGTATGAGCTGAAGGAGCAAATATCGAGCTTGGAGTCGTTCTTGGGGCTGGATGAGGTGGTGGCGGAGCAGCCGAGTCAGGTGGTGAGTGGAAGCGGTGACTCGGACTCGTTGGACCCGTGGATGCTGGATAACCTGGTGACGCACCTGCAACAGCAACAGCAACGGGGGCAGTTTCTGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009753 GO:0009755 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010286 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032870 GO:0035556 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071944 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

277

Amino Acids

30.99

Weight (kDa)

8.88

Isoelectric Point (pI)

49.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	92 - 141	2.1e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16770
fragaria_vesca	FvH4_4g18780
malus_domestica	MD13G1163300.v1.1 MD16G1162800.v1.1 MD16G1162900.v1.1
prunus_persica	Prupe.1G130300_v2.0.a1 Prupe.1G130300_v2.0.a1
pyrus_communis	pycom13g13920 pycom16g13800
rosa_chinensis	RchiOBHm_Chr4g0423581
rosa_laevigata	RLG00000007545
rosa_multiflora	Rmu_sc0000464.1_g000024 Rmu_sc0004342.1_g000003
rosa_roxburghii	Rroxscaffold_5G00365800
rosa_rugosa	Rorug04G0188800
rosa_samantha	Rh4AG248300 Rh4BG253500 Rh4CG261600 Rh4DG248800
rosa_wichuraiana	Rw4G021270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	801
Acc16I	TGCGCA	1 cut(s)	413
Acc36I	ACCTGC	1 cut(s)	801
AccB1I	GGYRCC	1 cut(s)	359
AccI	GTMKAC	1 cut(s)	545
AccII	CGCG	3 cut(s)	327, 390, 420
AcoI	YGGCCR	1 cut(s)	46
AcuI	CTGAAG	1 cut(s)	677
AcyI	GRCGYC	1 cut(s)	342
AfaI	GTAC	1 cut(s)	278
AfiI	CCNNNNNNNGG	2 cut(s)	76, 338
AgeI	ACCGGT	1 cut(s)	566
AhdI	GACNNNNNGTC	1 cut(s)	73
AjnI	CCWGG	1 cut(s)	780
AluBI	AGCT	7 cut(s)	55, 82, 232, 404, 436, 655, 675
AluI	AGCT	7 cut(s)	55, 82, 232, 404, 436, 655, 675
AlwNI	CAGNNNCTG	1 cut(s)	823
Ama87I	CYCGRG	1 cut(s)	534
AoxI	GGCC	4 cut(s)	46, 218, 296, 429
ApeKI	GCWGC	7 cut(s)	229, 232, 238, 241, 244, 404, 715
ArsI	GACNNNNNNTTYG	2 cut(s)	162, 194
AsiGI	ACCGGT	1 cut(s)	566
AspLEI	GCGC	2 cut(s)	392, 414
AspS9I	GGNCC	3 cut(s)	67, 157, 760
AsuC2I	CCSGG	1 cut(s)	225
AsuHPI	GGTGA	7 cut(s)	172, 611, 617, 650, 742, 755, 796
AvaI	CYCGRG	1 cut(s)	534
AvaII	GGWCC	3 cut(s)	67, 157, 760
AxyI	CCTNAGG	1 cut(s)	141
BanI	GGYRCC	1 cut(s)	359
BbvI	GCAGC	7 cut(s)	219, 225, 228, 231, 241, 391, 727
BccI	CCATC	3 cut(s)	98, 181, 629
BceAI	ACGGC	2 cut(s)	283, 392
BcgI	CGANNNNNNTGC	2 cut(s)	386, 420
BciT130I	CCWGG	1 cut(s)	782
BcnI	CCSGG	1 cut(s)	225
BfmI	CTRYAG	1 cut(s)	245
BfuAI	ACCTGC	1 cut(s)	801
BglI	GCCNNNNNGGC	1 cut(s)	226
Bme1390I	CCNGG	2 cut(s)	225, 782
Bme18I	GGWCC	3 cut(s)	67, 157, 760
BmeRI	GACNNNNNGTC	1 cut(s)	73
BmeT110I	CYCGRG	1 cut(s)	534
BmgT120I	GGNCC	3 cut(s)	67, 157, 760
BmiI	GGNNCC	3 cut(s)	361, 483, 762
BmrFI	CCNGG	2 cut(s)	225, 782
BmsI	GCATC	4 cut(s)	135, 192, 423, 759
BplI	GAGNNNNNCTC	2 cut(s)	339, 371
BpuMI	CCSGG	1 cut(s)	225
BsaHI	GRCGYC	1 cut(s)	342
BsaJI	CCNNGG	6 cut(s)	103, 224, 299, 375, 418, 764
BsaWI	WCCGGW	1 cut(s)	566
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 338
Bse118I	RCCGGY	1 cut(s)	566
Bse21I	CCTNAGG	1 cut(s)	141
BseBI	CCWGG	1 cut(s)	782
BseDI	CCNNGG	6 cut(s)	103, 224, 299, 375, 418, 764
BseGI	GGATG	4 cut(s)	414, 640, 703, 774
BseLI	CCNNNNNNNGG	2 cut(s)	76, 338
BseMII	CTCAG	3 cut(s)	132, 309, 563
BseRI	GAGGAG	1 cut(s)	92
BseXI	GCAGC	7 cut(s)	219, 225, 228, 231, 241, 391, 727
Bsh1236I	CGCG	3 cut(s)	327, 390, 420
BshFI	GGCC	4 cut(s)	48, 220, 298, 431
BshNI	GGYRCC	1 cut(s)	359
BshTI	ACCGGT	1 cut(s)	566
BsiHKCI	CYCGRG	1 cut(s)	534
BsiSI	CCGG	4 cut(s)	49, 224, 485, 567
BslI	CCNNNNNNNGG	2 cut(s)	76, 338
BsnI	GGCC	4 cut(s)	48, 220, 298, 431
BsoBI	CYCGRG	1 cut(s)	534
Bsp1407I	TGTACA	1 cut(s)	276
Bsp68I	TCGCGA	1 cut(s)	327
BspANI	GGCC	4 cut(s)	48, 220, 298, 431
BspCNI	CTCAG	3 cut(s)	133, 310, 562
BspFNI	CGCG	3 cut(s)	327, 390, 420
BspLI	GGNNCC	3 cut(s)	361, 483, 762
BspMAI	CTGCAG	1 cut(s)	249
BspMI	ACCTGC	1 cut(s)	801
BspT107I	GGYRCC	1 cut(s)	359
BsrFI	RCCGGY	1 cut(s)	566
BsrGI	TGTACA	1 cut(s)	276
BssAI	RCCGGY	1 cut(s)	566
BssECI	CCNNGG	6 cut(s)	103, 224, 299, 375, 418, 764
BssNI	GRCGYC	1 cut(s)	342
Bst2UI	CCWGG	1 cut(s)	782
Bst4CI	ACNGT	1 cut(s)	605
Bst6I	CTCTTC	1 cut(s)	466
BstACI	GRCGYC	1 cut(s)	342
BstAUI	TGTACA	1 cut(s)	276
BstC8I	GCNNGC	1 cut(s)	388
BstDEI	CTNAG	4 cut(s)	141, 318, 549, 618
BstDSI	CCRYGG	3 cut(s)	299, 418, 764
BstF5I	GGATG	4 cut(s)	414, 640, 703, 774
BstFNI	CGCG	3 cut(s)	327, 390, 420
BstHHI	GCGC	2 cut(s)	392, 414
BstNI	CCWGG	1 cut(s)	782
BstSCI	CCNGG	2 cut(s)	223, 780
BstSFI	CTRYAG	1 cut(s)	245
BstUI	CGCG	3 cut(s)	327, 390, 420
BstV1I	GCAGC	7 cut(s)	219, 225, 228, 231, 241, 391, 727
Bsu36I	CCTNAGG	1 cut(s)	141
BsuRI	GGCC	4 cut(s)	48, 220, 298, 431
BtgI	CCRYGG	3 cut(s)	299, 418, 764
BtgZI	GCGATG	1 cut(s)	16
BtsCI	GGATG	4 cut(s)	414, 640, 703, 774
BtsI	GCAGTG	1 cut(s)	464
BtsIMutI	CAGTG	1 cut(s)	464
BtuMI	TCGCGA	1 cut(s)	327
BveI	ACCTGC	1 cut(s)	801
Cac8I	GCNNGC	1 cut(s)	388
CaiI	CAGNNNCTG	1 cut(s)	823
CfoI	GCGC	2 cut(s)	392, 414
Cfr10I	RCCGGY	1 cut(s)	566
Cfr13I	GGNCC	3 cut(s)	67, 157, 760
Cfr42I	CCGCGG	1 cut(s)	421
CseI	GACGC	2 cut(s)	331, 796
CsiI	ACCWGGT	1 cut(s)	780
Csp6I	GTAC	1 cut(s)	277
CspAI	ACCGGT	1 cut(s)	566
CspCI	CAANNNNNGTGG	2 cut(s)	519, 554
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	4 cut(s)	141, 318, 549, 618
DriI	GACNNNNNGTC	1 cut(s)	73
EaeI	YGGCCR	1 cut(s)	46
Eam1104I	CTCTTC	1 cut(s)	466
Eam1105I	GACNNNNNGTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	466
EciI	GGCGGA	2 cut(s)	647, 725
Eco47I	GGWCC	3 cut(s)	67, 157, 760
Eco57I	CTGAAG	1 cut(s)	677
Eco81I	CCTNAGG	1 cut(s)	141
Eco88I	CYCGRG	1 cut(s)	534
EcoO109I	RGGNCCY	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	780
FaiI	YATR	5 cut(s)	110, 582, 611, 615, 651
FalI	AAGNNNNNCTT	2 cut(s)	425, 457
FauI	CCCGC	2 cut(s)	341, 395
FblI	GTMKAC	1 cut(s)	545
FokI	GGATG	4 cut(s)	401, 647, 710, 781
FspAI	RTGCGCAY	1 cut(s)	413
FspI	TGCGCA	1 cut(s)	413
GlaI	GCGC	2 cut(s)	391, 413
HaeIII	GGCC	4 cut(s)	48, 220, 298, 431
HapII	CCGG	4 cut(s)	49, 224, 485, 567
HgaI	GACGC	2 cut(s)	331, 796
HhaI	GCGC	2 cut(s)	392, 414
Hin1I	GRCGYC	1 cut(s)	342
Hin6I	GCGC	2 cut(s)	390, 412
HinP1I	GCGC	2 cut(s)	390, 412
HincII	GTYRAC	1 cut(s)	546
HindII	GTYRAC	1 cut(s)	546
HinfI	GANTC	9 cut(s)	322, 348, 527, 542, 547, 680, 721, 746, 752
HpaII	CCGG	4 cut(s)	49, 224, 485, 567
HphI	GGTGA	7 cut(s)	172, 611, 617, 650, 742, 755, 796
Hpy166II	GTNNAC	2 cut(s)	277, 546
Hpy188I	TCNGA	5 cut(s)	25, 79, 97, 347, 751
Hpy188III	TCNNGA	2 cut(s)	160, 326
Hpy8I	GTNNAC	2 cut(s)	277, 546
Hpy99I	CGWCG	1 cut(s)	401
HpyAV	CCTTC	4 cut(s)	58, 210, 244, 652
HpyCH4III	ACNGT	1 cut(s)	605
HpyCH4V	TGCA	3 cut(s)	247, 516, 796
HpyF3I	CTNAG	4 cut(s)	141, 318, 549, 618
Hsp92I	GRCGYC	1 cut(s)	342
HspAI	GCGC	2 cut(s)	390, 412
KspI	CCGCGG	1 cut(s)	421
LmnI	GCTCC	4 cut(s)	79, 487, 661, 712
Lsp1109I	GCAGC	7 cut(s)	219, 225, 228, 231, 241, 391, 727
LweI	GCATC	4 cut(s)	135, 192, 423, 759
MabI	ACCWGGT	1 cut(s)	780
MaeIII	GTNAC	5 cut(s)	178, 599, 638, 743, 784
MboII	GAAGA	1 cut(s)	453
MlyI	GAGTC	7 cut(s)	357, 541, 551, 689, 730, 740, 746
MmeI	TCCRAC	4 cut(s)	48, 57, 144, 738
MseI	TTAA	1 cut(s)	829
MspA1I	CMGCKG	3 cut(s)	232, 238, 420
MspI	CCGG	4 cut(s)	49, 224, 485, 567
MspR9I	CCNGG	2 cut(s)	225, 782
MvaI	CCWGG	1 cut(s)	782
MvnI	CGCG	3 cut(s)	327, 390, 420
NciI	CCSGG	1 cut(s)	225
NlaIV	GGNNCC	3 cut(s)	361, 483, 762
NmeAIII	GCCGAG	5 cut(s)	84, 336, 400, 579, 744
NmuCI	GTSAC	5 cut(s)	178, 599, 638, 743, 784
NruI	TCGCGA	1 cut(s)	327
NsbI	TGCGCA	1 cut(s)	413
PaqCI	CACCTGC	1 cut(s)	801
PcsI	WCGNNNNNNNCGW	4 cut(s)	405, 497, 551, 761
PfeI	GAWTC	2 cut(s)	322, 527
PinAI	ACCGGT	1 cut(s)	566
PleI	GAGTC	7 cut(s)	356, 541, 550, 688, 729, 740, 746
PpsI	GAGTC	7 cut(s)	356, 541, 550, 688, 729, 740, 746
PpuMI	RGGWCCY	1 cut(s)	67
Psp5II	RGGWCCY	1 cut(s)	67
Psp6I	CCWGG	1 cut(s)	780
PspGI	CCWGG	1 cut(s)	780
PspN4I	GGNNCC	3 cut(s)	361, 483, 762
PspPI	GGNCC	3 cut(s)	67, 157, 760
PspPPI	RGGWCCY	1 cut(s)	67
PstI	CTGCAG	1 cut(s)	249
PstNI	CAGNNNCTG	1 cut(s)	823
PvuII	CAGCTG	1 cut(s)	232
RruI	TCGCGA	1 cut(s)	327
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
SacII	CCGCGG	1 cut(s)	421
SalI	GTCGAC	1 cut(s)	544
SaqAI	TTAA	1 cut(s)	829
Sau96I	GGNCC	3 cut(s)	67, 157, 760
SchI	GAGTC	7 cut(s)	357, 541, 551, 689, 730, 740, 746
ScrFI	CCNGG	2 cut(s)	225, 782
SexAI	ACCWGGT	1 cut(s)	780
SfaNI	GCATC	4 cut(s)	135, 192, 423, 759
SfcI	CTRYAG	1 cut(s)	245
Sfr303I	CCGCGG	1 cut(s)	421
SgrBI	CCGCGG	1 cut(s)	421
SinI	GGWCC	3 cut(s)	67, 157, 760
StyD4I	CCNGG	2 cut(s)	223, 780
TaaI	ACNGT	1 cut(s)	605
TaqI	TCGA	3 cut(s)	193, 545, 671
TatI	WGTACW	1 cut(s)	276
TauI	GCSGC	7 cut(s)	38, 238, 317, 386, 423, 496, 499
TfiI	GAWTC	2 cut(s)	322, 527
Tru1I	TTAA	1 cut(s)	829
Tru9I	TTAA	1 cut(s)	829
TscAI	CASTG	1 cut(s)	471
TseFI	GTSAC	5 cut(s)	178, 599, 638, 743, 784
TseI	GCWGC	7 cut(s)	229, 232, 238, 241, 244, 404, 715
Tsp45I	GTSAC	5 cut(s)	178, 599, 638, 743, 784
TspDTI	ATGAA	1 cut(s)	19
TspGWI	ACGGA	2 cut(s)	74, 657
TspRI	CASTG	1 cut(s)	471
VpaK11BI	GGWCC	3 cut(s)	67, 157, 760
XmiI	GTMKAC	1 cut(s)	545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.