Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0011185

Physical Location & Seq

Genomic Coordinates Reverse (-)

12835994 .. 12837987

Gene Structure 1994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1163300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGTGTGGTGGTGCTATCATTTCCGACTTCATCGCCGTCAAGCGCGCCCTGAAGCTGACGGCGGAGGACCTCTGGTCAGATCTTGACACCATCTCTGACCTCCTTGGCATAGACTACTCCAACAGCATCAACAAACAGCCGGAGAATCACAAGGTGGTCCAAAAGCCGAAACCATCTATCACCAAAGTGACAAGTGATGAGAAGCCCAAGCAGGCGAGCGGGTCTGCTGCTGCCGCAAAAGGCAAGAGAGTGAGGAAAAACGTGTACAGAGGAATAAGGCAGAGGCCGTGGGGCAAATGGGCGGCTGAGATTCGCGACCCCTACAAAGGCGTCCGGGTCTGGCTCGGCACCTATGACACCGCTGAGGAAGCCGCCCGCGCTTACGATGAAGCCGCCGTGCGCATCCGCGGGGACAAGGCCAAGCTCAACTTTGCCCAACCACCATCCTCTTCACCGCTTCCATCTCTGGCGCCGGATACGCCGCCGCCGACAAAGAGGCGGTGCATTGTTGCTGAGTCAACTCGGGTGGAGCCGACTCAACCGAGTTTCCAGACCGGTTCTTACTATTATGATCCATTATATCACGGCGGTGGTGGTGGGGAAATGTATGCTAAGAAAGAGGTGGCGGGTGGGGACGAGGTGGTGGTAGAGCAGCTGAGTCAGGTGGTGAGTGGAAGCGGAGAGTCGGACTCGTTGTACCTGTGGATGCTGGATGACCTGGTGGCATATCAGCAACAAGGGCAGCTTCTGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009753 GO:0009755 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010286 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032870 GO:0035556 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071944 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

252

Amino Acids

27.57

Weight (kDa)

8.34

Isoelectric Point (pI)

41.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	88 - 137	1.6e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16770
fragaria_vesca	FvH4_4g18780
malus_domestica	MD13G1163300.v1.1 MD16G1162800.v1.1 MD16G1162900.v1.1
prunus_persica	Prupe.1G130300_v2.0.a1 Prupe.1G130300_v2.0.a1
pyrus_communis	pycom13g13920 pycom16g13800
rosa_chinensis	RchiOBHm_Chr4g0423581
rosa_laevigata	RLG00000007545
rosa_multiflora	Rmu_sc0000464.1_g000024 Rmu_sc0004342.1_g000003
rosa_roxburghii	Rroxscaffold_5G00365800
rosa_rugosa	Rorug04G0188800
rosa_samantha	Rh4AG248300 Rh4BG253500 Rh4CG261600 Rh4DG248800
rosa_wichuraiana	Rw4G021270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	401
AccB1I	GGYRCC	2 cut(s)	347, 469
AccBSI	CCGCTC	1 cut(s)	219
AccII	CGCG	4 cut(s)	45, 315, 378, 408
AclWI	GGATC	1 cut(s)	566
AcuI	CTGAAG	1 cut(s)	71
AcyI	GRCGYC	2 cut(s)	330, 470
AdeI	CACNNNGTG	1 cut(s)	154
AfaI	GTAC	2 cut(s)	266, 698
AfiI	CCNNNNNNNGG	1 cut(s)	326
AflIII	ACRYGT	1 cut(s)	261
AgeI	ACCGGT	1 cut(s)	554
AhdI	GACNNNNNGTC	1 cut(s)	73
AjnI	CCWGG	1 cut(s)	717
AleI	CACNNNNGTG	2 cut(s)	185, 588
AluBI	AGCT	4 cut(s)	55, 424, 655, 745
AluI	AGCT	4 cut(s)	55, 424, 655, 745
AlwI	GGATC	1 cut(s)	566
AlwNI	CAGNNNCTG	1 cut(s)	748
Ama87I	CYCGRG	1 cut(s)	522
AoxI	GGCC	2 cut(s)	284, 417
ApeKI	GCWGC	4 cut(s)	227, 230, 652, 742
AsiGI	ACCGGT	1 cut(s)	554
AspLEI	GCGC	5 cut(s)	45, 47, 380, 402, 472
AspS9I	GGNCC	2 cut(s)	67, 157
AsuC2I	CCSGG	1 cut(s)	335
AsuHPI	GGTGA	3 cut(s)	172, 444, 679
AvaI	CYCGRG	1 cut(s)	522
AvaII	GGWCC	2 cut(s)	67, 157
BanI	GGYRCC	2 cut(s)	347, 469
BbvCI	CCTCAGC	1 cut(s)	363
BbvI	GCAGC	3 cut(s)	214, 217, 664
BccI	CCATC	4 cut(s)	98, 181, 451, 469
BceAI	ACGGC	5 cut(s)	20, 75, 271, 380, 601
BciT130I	CCWGG	1 cut(s)	719
BciVI	GTATCC	1 cut(s)	469
BcnI	CCSGG	1 cut(s)	335
BfoI	RGCGCY	1 cut(s)	473
BfuI	GTATCC	1 cut(s)	469
BglII	AGATCT	1 cut(s)	79
Bme1390I	CCNGG	2 cut(s)	335, 719
Bme18I	GGWCC	2 cut(s)	67, 157
BmeRI	GACNNNNNGTC	1 cut(s)	73
BmeT110I	CYCGRG	1 cut(s)	522
BmgT120I	GGNCC	2 cut(s)	67, 157
BmiI	GGNNCC	3 cut(s)	349, 471, 531
BmrFI	CCNGG	2 cut(s)	335, 719
BmsI	GCATC	3 cut(s)	135, 411, 696
BplI	GAGNNNNNCTC	2 cut(s)	674, 706
Bpu10I	CCTNAGC	1 cut(s)	363
BpuMI	CCSGG	1 cut(s)	335
BsaHI	GRCGYC	2 cut(s)	330, 470
BsaJI	CCNNGG	3 cut(s)	103, 287, 406
BsaWI	WCCGGW	1 cut(s)	554
Bsc4I	CCNNNNNNNGG	1 cut(s)	326
Bse118I	RCCGGY	1 cut(s)	554
BseBI	CCWGG	1 cut(s)	719
BseDI	CCNNGG	3 cut(s)	103, 287, 406
BseGI	GGATG	4 cut(s)	402, 443, 711, 718
BseLI	CCNNNNNNNGG	1 cut(s)	326
BseMII	CTCAG	4 cut(s)	297, 354, 504, 647
BsePI	GCGCGC	1 cut(s)	43
BseXI	GCAGC	3 cut(s)	214, 217, 664
Bsh1236I	CGCG	4 cut(s)	45, 315, 378, 408
BshFI	GGCC	2 cut(s)	286, 419
BshNI	GGYRCC	2 cut(s)	347, 469
BshTI	ACCGGT	1 cut(s)	554
BsiHKCI	CYCGRG	1 cut(s)	522
BsiSI	CCGG	4 cut(s)	140, 334, 473, 555
BslFI	GGGAC	2 cut(s)	425, 647
BslI	CCNNNNNNNGG	1 cut(s)	326
BsmFI	GGGAC	2 cut(s)	425, 647
BsnI	GGCC	2 cut(s)	286, 419
BsoBI	CYCGRG	1 cut(s)	522
Bsp1407I	TGTACA	1 cut(s)	264
Bsp143I	GATC	2 cut(s)	79, 571
Bsp68I	TCGCGA	1 cut(s)	315
BspANI	GGCC	2 cut(s)	286, 419
BspCNI	CTCAG	4 cut(s)	298, 355, 505, 648
BspFNI	CGCG	4 cut(s)	45, 315, 378, 408
BspLI	GGNNCC	3 cut(s)	349, 471, 531
BspPI	GGATC	1 cut(s)	566
BspT107I	GGYRCC	2 cut(s)	347, 469
BsrBI	CCGCTC	1 cut(s)	219
BsrFI	RCCGGY	1 cut(s)	554
BsrGI	TGTACA	1 cut(s)	264
BssAI	RCCGGY	1 cut(s)	554
BssECI	CCNNGG	3 cut(s)	103, 287, 406
BssHII	GCGCGC	1 cut(s)	43
BssMI	GATC	2 cut(s)	79, 571
BssNI	GRCGYC	2 cut(s)	330, 470
BssT1I	CCWWGG	1 cut(s)	103
Bst2UI	CCWGG	1 cut(s)	719
Bst6I	CTCTTC	1 cut(s)	454
BstACI	GRCGYC	2 cut(s)	330, 470
BstAUI	TGTACA	1 cut(s)	264
BstC8I	GCNNGC	4 cut(s)	45, 213, 217, 376
BstDEI	CTNAG	5 cut(s)	306, 363, 513, 612, 656
BstDSI	CCRYGG	2 cut(s)	287, 406
BstF5I	GGATG	4 cut(s)	402, 443, 711, 718
BstFNI	CGCG	4 cut(s)	45, 315, 378, 408
BstH2I	RGCGCY	1 cut(s)	473
BstHHI	GCGC	5 cut(s)	45, 47, 380, 402, 472
BstKTI	GATC	2 cut(s)	82, 574
BstMBI	GATC	2 cut(s)	79, 571
BstMWI	GCNNNNNNNGC	5 cut(s)	233, 368, 377, 478, 739
BstNI	CCWGG	1 cut(s)	719
BstSCI	CCNGG	2 cut(s)	333, 717
BstUI	CGCG	4 cut(s)	45, 315, 378, 408
BstV1I	GCAGC	3 cut(s)	214, 217, 664
BstX2I	RGATCY	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	79
BsuI	GTATCC	1 cut(s)	469
BsuRI	GGCC	2 cut(s)	286, 419
BtgI	CCRYGG	2 cut(s)	287, 406
BtgZI	GCGATG	1 cut(s)	16
BtsCI	GGATG	4 cut(s)	402, 443, 711, 718
BtuMI	TCGCGA	1 cut(s)	315
Cac8I	GCNNGC	4 cut(s)	45, 213, 217, 376
CaiI	CAGNNNCTG	1 cut(s)	748
CfoI	GCGC	5 cut(s)	45, 47, 380, 402, 472
Cfr10I	RCCGGY	1 cut(s)	554
Cfr13I	GGNCC	2 cut(s)	67, 157
Cfr42I	CCGCGG	1 cut(s)	409
CseI	GACGC	1 cut(s)	319
CsiI	ACCWGGT	1 cut(s)	717
Csp6I	GTAC	2 cut(s)	265, 697
CspAI	ACCGGT	1 cut(s)	554
CspCI	CAANNNNNGTGG	2 cut(s)	507, 542
CviQI	GTAC	2 cut(s)	265, 697
DdeI	CTNAG	5 cut(s)	306, 363, 513, 612, 656
DinI	GGCGCC	1 cut(s)	471
DpnI	GATC	2 cut(s)	81, 573
DpnII	GATC	2 cut(s)	79, 571
DraIII	CACNNNGTG	1 cut(s)	154
DriI	GACNNNNNGTC	1 cut(s)	73
Eam1104I	CTCTTC	1 cut(s)	454
Eam1105I	GACNNNNNGTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	454
EciI	GGCGGA	1 cut(s)	77
Eco130I	CCWWGG	1 cut(s)	103
Eco47I	GGWCC	2 cut(s)	67, 157
Eco57I	CTGAAG	1 cut(s)	71
Eco88I	CYCGRG	1 cut(s)	522
EcoO109I	RGGNCCY	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	717
EcoT14I	CCWWGG	1 cut(s)	103
EgeI	GGCGCC	1 cut(s)	471
EheI	GGCGCC	1 cut(s)	471
ErhI	CCWWGG	1 cut(s)	103
FaiI	YATR	6 cut(s)	110, 354, 570, 580, 609, 727
FalI	AAGNNNNNCTT	3 cut(s)	413, 445, 729
FaqI	GGGAC	2 cut(s)	425, 647
FauI	CCCGC	4 cut(s)	212, 383, 401, 619
FokI	GGATG	4 cut(s)	389, 430, 718, 725
FspAI	RTGCGCAY	1 cut(s)	401
FspI	TGCGCA	1 cut(s)	401
GlaI	GCGC	5 cut(s)	44, 46, 379, 401, 471
HaeII	RGCGCY	1 cut(s)	473
HaeIII	GGCC	2 cut(s)	286, 419
HapII	CCGG	4 cut(s)	140, 334, 473, 555
HgaI	GACGC	1 cut(s)	319
HhaI	GCGC	5 cut(s)	45, 47, 380, 402, 472
Hin1I	GRCGYC	2 cut(s)	330, 470
Hin6I	GCGC	5 cut(s)	43, 45, 378, 400, 470
HinP1I	GCGC	5 cut(s)	43, 45, 378, 400, 470
HincII	GTYRAC	1 cut(s)	519
HindII	GTYRAC	1 cut(s)	519
HinfI	GANTC	7 cut(s)	145, 310, 515, 535, 658, 683, 689
HpaII	CCGG	4 cut(s)	140, 334, 473, 555
HphI	GGTGA	3 cut(s)	172, 444, 679
Hpy166II	GTNNAC	2 cut(s)	265, 519
Hpy188I	TCNGA	4 cut(s)	25, 79, 97, 688
Hpy188III	TCNNGA	3 cut(s)	83, 314, 550
Hpy8I	GTNNAC	2 cut(s)	265, 519
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	1 cut(s)	504
HpyF10VI	GCNNNNNNNGC	5 cut(s)	233, 368, 377, 478, 739
HpyF3I	CTNAG	5 cut(s)	306, 363, 513, 612, 656
HpySE526I	ACGT	1 cut(s)	261
Hsp92I	GRCGYC	2 cut(s)	330, 470
HspAI	GCGC	5 cut(s)	43, 45, 378, 400, 470
KasI	GGCGCC	1 cut(s)	469
KspI	CCGCGG	1 cut(s)	409
Kzo9I	GATC	2 cut(s)	79, 571
LmnI	GCTCC	1 cut(s)	529
Lsp1109I	GCAGC	3 cut(s)	214, 217, 664
LweI	GCATC	3 cut(s)	135, 411, 696
MabI	ACCWGGT	1 cut(s)	717
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	1 cut(s)	187
MalI	GATC	2 cut(s)	81, 573
MbiI	CCGCTC	1 cut(s)	219
MboI	GATC	2 cut(s)	79, 571
MboII	GAAGA	1 cut(s)	441
MflI	RGATCY	1 cut(s)	79
Mly113I	GGCGCC	1 cut(s)	470
MlyI	GAGTC	5 cut(s)	524, 529, 667, 683, 692
MmeI	TCCRAC	3 cut(s)	48, 144, 666
MseI	TTAA	1 cut(s)	754
MslI	CAYNNNNRTG	2 cut(s)	185, 588
MspA1I	CMGCKG	3 cut(s)	362, 408, 655
MspI	CCGG	4 cut(s)	140, 334, 473, 555
MspR9I	CCNGG	2 cut(s)	335, 719
MvaI	CCWGG	1 cut(s)	719
MvnI	CGCG	4 cut(s)	45, 315, 378, 408
MwoI	GCNNNNNNNGC	5 cut(s)	233, 368, 377, 478, 739
NarI	GGCGCC	1 cut(s)	470
NciI	CCSGG	1 cut(s)	335
NdeII	GATC	2 cut(s)	79, 571
NlaIV	GGNNCC	3 cut(s)	349, 471, 531
NmeAIII	GCCGAG	1 cut(s)	324
NmuCI	GTSAC	1 cut(s)	187
NruI	TCGCGA	1 cut(s)	315
NsbI	TGCGCA	1 cut(s)	401
OliI	CACNNNNGTG	2 cut(s)	185, 588
PauI	GCGCGC	1 cut(s)	43
PcsI	WCGNNNNNNNCGW	1 cut(s)	485
PfeI	GAWTC	2 cut(s)	145, 310
PinAI	ACCGGT	1 cut(s)	554
PleI	GAGTC	5 cut(s)	523, 529, 666, 683, 691
PluTI	GGCGCC	1 cut(s)	473
PpsI	GAGTC	5 cut(s)	523, 529, 666, 683, 691
PpuMI	RGGWCCY	1 cut(s)	67
Psp5II	RGGWCCY	1 cut(s)	67
Psp6I	CCWGG	1 cut(s)	717
PspGI	CCWGG	1 cut(s)	717
PspN4I	GGNNCC	3 cut(s)	349, 471, 531
PspPI	GGNCC	2 cut(s)	67, 157
PspPPI	RGGWCCY	1 cut(s)	67
PstNI	CAGNNNCTG	1 cut(s)	748
PsuI	RGATCY	1 cut(s)	79
PteI	GCGCGC	1 cut(s)	43
PvuII	CAGCTG	1 cut(s)	655
RruI	TCGCGA	1 cut(s)	315
RsaI	GTAC	2 cut(s)	266, 698
RsaNI	GTAC	2 cut(s)	265, 697
RseI	CAYNNNNRTG	2 cut(s)	185, 588
SacII	CCGCGG	1 cut(s)	409
SaqAI	TTAA	1 cut(s)	754
Sau3AI	GATC	2 cut(s)	79, 571
Sau96I	GGNCC	2 cut(s)	67, 157
SchI	GAGTC	5 cut(s)	524, 529, 667, 683, 692
ScrFI	CCNGG	2 cut(s)	335, 719
SexAI	ACCWGGT	1 cut(s)	717
SfaNI	GCATC	3 cut(s)	135, 411, 696
SfoI	GGCGCC	1 cut(s)	471
Sfr303I	CCGCGG	1 cut(s)	409
SgrBI	CCGCGG	1 cut(s)	409
SinI	GGWCC	2 cut(s)	67, 157
SmiMI	CAYNNNNRTG	2 cut(s)	185, 588
SspDI	GGCGCC	1 cut(s)	469
StyD4I	CCNGG	2 cut(s)	333, 717
StyI	CCWWGG	1 cut(s)	103
TaiI	ACGT	1 cut(s)	264
TatI	WGTACW	1 cut(s)	264
TauI	GCSGC	6 cut(s)	236, 305, 374, 395, 484, 487
TfiI	GAWTC	2 cut(s)	145, 310
Tru1I	TTAA	1 cut(s)	754
Tru9I	TTAA	1 cut(s)	754
TseFI	GTSAC	1 cut(s)	187
TseI	GCWGC	4 cut(s)	227, 230, 652, 742
Tsp45I	GTSAC	1 cut(s)	187
TspDTI	ATGAA	2 cut(s)	19, 402
VpaK11BI	GGWCC	2 cut(s)	67, 157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.