Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004342.1

Orthogroup ID

OG0011185

Physical Location & Seq

Genomic Coordinates Reverse (-)

10647 .. 11935

Gene Structure 1289 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004342.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

atgtgtggaggtgctatcatttccgacttcaccgaggccaagcgtggctggaagctgaccgctgagggcctctgttttgagcttgacaccatctctgacctccttggcttggactcttccagcaacaaccgccaggttccgcaccacaagctcgctcagaaggcaaaggtggacccaaatccagtcaccaaagtgtcgagtgaaatcaaggagaagaagacaagtatcggagttgcagaagatgggaagacgaagagagtgaggaagaacatctacagaggaataaggcagaggccatggggcaaatgggcggccgagattcgcgacccgcacaaaggcgtaagagtctggctcggaaccttcaacacacccgaggaagctgctcgggcctatgatgaagccgccaggcgcatccgcggcgacaaggccaagctcaacttccctccacaacctgccccggttcctgctccggctccggcttcggcccagctccagccaccctccaagaagcggtgcatggctctcgaggcgactgcaccagctatgatgggcatggagccttactatccttcattccagaatgagttctactgtaggagtgagactgctgctgatcaccatgagtgtgagctgaaagagcaaatctcgagcttggagtctttcctaggcctggatgagtcagtgtcgtcgaatgaggtgatgagtggactcggaatcggtgagccggactcagtggacctgtggatgctggatgacctggttacacatcaccagcagcaaggtgagcatcagctcgtgtattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009753 GO:0009755 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010286 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032870 GO:0035556 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071944 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

267

Amino Acids

29.68

Weight (kDa)

6.26

Isoelectric Point (pI)

54.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16770
fragaria_vesca	FvH4_4g18780
malus_domestica	MD13G1163300.v1.1 MD16G1162800.v1.1 MD16G1162900.v1.1
prunus_persica	Prupe.1G130300_v2.0.a1 Prupe.1G130300_v2.0.a1
pyrus_communis	pycom13g13920 pycom16g13800
rosa_chinensis	RchiOBHm_Chr4g0423581
rosa_laevigata	RLG00000007545
rosa_multiflora	Rmu_sc0000464.1_g000024 Rmu_sc0004342.1_g000003
rosa_roxburghii	Rroxscaffold_5G00365800
rosa_rugosa	Rorug04G0188800
rosa_samantha	Rh4AG248300 Rh4BG253500 Rh4CG261600 Rh4DG248800
rosa_wichuraiana	Rw4G021270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	460
AccII	CGCG	2 cut(s)	324, 417
AciI	CCGC	9 cut(s)	60, 130, 140, 311, 329, 402, 415, 417, 511
AcoI	YGGCCR	1 cut(s)	312
AfiI	CCNNNNNNNGG	4 cut(s)	109, 335, 510, 670
AgsI	TTSAA	1 cut(s)	364
AjnI	CCWGG	4 cut(s)	132, 404, 669, 756
AjuI	GAANNNNNNNTTGG	2 cut(s)	422, 454
AleI	CACNNNNGTG	1 cut(s)	191
Alw26I	GTCTC	1 cut(s)	596
Ama87I	CYCGRG	4 cut(s)	371, 384, 524, 646
AoxI	GGCC	8 cut(s)	36, 67, 293, 312, 387, 426, 483, 667
ApeKI	GCWGC	3 cut(s)	380, 608, 775
Asp700I	GAANNNNTTC	1 cut(s)	584
AspA2I	CCTAGG	1 cut(s)	664
AspLEI	GCGC	1 cut(s)	411
AspS9I	GGNCC	5 cut(s)	67, 172, 387, 484, 736
AsuC2I	CCSGG	1 cut(s)	458
AsuHPI	GGTGA	7 cut(s)	22, 178, 608, 709, 731, 761, 794
AvaI	CYCGRG	4 cut(s)	371, 384, 524, 646
AvaII	GGWCC	2 cut(s)	172, 736
AvrII	CCTAGG	1 cut(s)	664
BarI	GAAGNNNNNNTAC	2 cut(s)	257, 289
BauI	CACGAG	1 cut(s)	794
BbsI	GAAGAC	2 cut(s)	224, 254
BbvCI	CCTCAGC	1 cut(s)	63
BbvI	GCAGC	3 cut(s)	367, 595, 787
BccI	CCATC	3 cut(s)	98, 236, 541
BcgI	CGANNNNNNTGC	6 cut(s)	362, 396, 505, 515, 539, 549
BciT130I	CCWGG	4 cut(s)	134, 406, 671, 758
BclI	TGATCA	1 cut(s)	613
BcnI	CCSGG	1 cut(s)	458
BcoDI	GTCTC	1 cut(s)	596
BfaI	CTAG	1 cut(s)	665
BfmI	CTRYAG	2 cut(s)	274, 592
BfuAI	ACCTGC	1 cut(s)	460
BisI	GCNGC	6 cut(s)	312, 381, 402, 418, 609, 776
BlnI	CCTAGG	1 cut(s)	664
BlsI	GCNGC	6 cut(s)	313, 382, 403, 419, 610, 777
Bme1390I	CCNGG	5 cut(s)	134, 406, 458, 671, 758
Bme18I	GGWCC	2 cut(s)	172, 736
BmeT110I	CYCGRG	4 cut(s)	371, 384, 524, 646
BmgT120I	GGNCC	5 cut(s)	67, 172, 387, 484, 736
BmiI	GGNNCC	6 cut(s)	138, 174, 358, 462, 474, 558
BmrFI	CCNGG	5 cut(s)	134, 406, 458, 671, 758
BmsI	GCATC	3 cut(s)	420, 735, 796
BpiI	GAAGAC	2 cut(s)	224, 254
BplI	GAGNNNNNCTC	6 cut(s)	336, 368, 629, 661, 713, 745
BpmI	CTGGAG	1 cut(s)	476
Bpu10I	CCTNAGC	1 cut(s)	63
BpuMI	CCSGG	1 cut(s)	458
BsaJI	CCNNGG	7 cut(s)	33, 103, 296, 372, 415, 456, 664
Bsc4I	CCNNNNNNNGG	4 cut(s)	109, 335, 510, 670
Bse1I	ACTGG	1 cut(s)	182
BseBI	CCWGG	4 cut(s)	134, 406, 671, 758
BseDI	CCNNGG	7 cut(s)	33, 103, 296, 372, 415, 456, 664
BseGI	GGATG	4 cut(s)	411, 679, 750, 757
BseLI	CCNNNNNNNGG	4 cut(s)	109, 335, 510, 670
BseMII	CTCAG	3 cut(s)	54, 170, 744
BseNI	ACTGG	1 cut(s)	182
BseX3I	CGGCCG	1 cut(s)	312
BseXI	GCAGC	3 cut(s)	367, 595, 787
BseYI	CCCAGC	1 cut(s)	486
BsgI	GTGCAG	1 cut(s)	519
Bsh1236I	CGCG	2 cut(s)	324, 417
Bsh1285I	CGRYCG	1 cut(s)	315
BshFI	GGCC	8 cut(s)	38, 69, 295, 314, 389, 428, 485, 669
BsiEI	CGRYCG	1 cut(s)	315
BsiHKCI	CYCGRG	4 cut(s)	371, 384, 524, 646
BsiSI	CCGG	4 cut(s)	458, 470, 476, 725
BslI	CCNNNNNNNGG	4 cut(s)	109, 335, 510, 670
BsmAI	GTCTC	1 cut(s)	596
BsnI	GGCC	8 cut(s)	38, 69, 295, 314, 389, 428, 485, 669
BsoBI	CYCGRG	4 cut(s)	371, 384, 524, 646
Bsp143I	GATC	1 cut(s)	613
Bsp19I	CCATGG	1 cut(s)	296
Bsp68I	TCGCGA	1 cut(s)	324
BspACI	CCGC	9 cut(s)	60, 130, 140, 311, 329, 402, 415, 417, 511
BspANI	GGCC	8 cut(s)	38, 69, 295, 314, 389, 428, 485, 669
BspCNI	CTCAG	3 cut(s)	55, 169, 743
BspFNI	CGCG	2 cut(s)	324, 417
BspLI	GGNNCC	6 cut(s)	138, 174, 358, 462, 474, 558
BspMI	ACCTGC	1 cut(s)	460
BsrI	ACTGG	1 cut(s)	182
BssECI	CCNNGG	7 cut(s)	33, 103, 296, 372, 415, 456, 664
BssMI	GATC	1 cut(s)	613
BssSI	CACGAG	1 cut(s)	794
BssT1I	CCWWGG	3 cut(s)	103, 296, 664
Bst2BI	CACGAG	1 cut(s)	794
Bst2UI	CCWGG	4 cut(s)	134, 406, 671, 758
Bst4CI	ACNGT	1 cut(s)	593
Bst6I	CTCTTC	2 cut(s)	121, 248
BstC8I	GCNNGC	1 cut(s)	153
BstDEI	CTNAG	3 cut(s)	63, 156, 730
BstDSI	CCRYGG	2 cut(s)	296, 415
BstF5I	GGATG	4 cut(s)	411, 679, 750, 757
BstFNI	CGCG	2 cut(s)	324, 417
BstHHI	GCGC	1 cut(s)	411
BstKTI	GATC	1 cut(s)	616
BstMAI	GTCTC	1 cut(s)	596
BstMBI	GATC	1 cut(s)	613
BstMCI	CGRYCG	1 cut(s)	315
BstMWI	GCNNNNNNNGC	8 cut(s)	129, 148, 161, 386, 417, 527, 637, 784
BstNI	CCWGG	4 cut(s)	134, 406, 671, 758
BstSCI	CCNGG	5 cut(s)	132, 404, 456, 669, 756
BstSFI	CTRYAG	2 cut(s)	274, 592
BstUI	CGCG	2 cut(s)	324, 417
BstV1I	GCAGC	3 cut(s)	367, 595, 787
BstV2I	GAAGAC	2 cut(s)	224, 254
BstZI	CGGCCG	1 cut(s)	312
BsuRI	GGCC	8 cut(s)	38, 69, 295, 314, 389, 428, 485, 669
BtgI	CCRYGG	2 cut(s)	296, 415
BtsCI	GGATG	4 cut(s)	411, 679, 750, 757
BtsIMutI	CAGTG	2 cut(s)	687, 738
BtuMI	TCGCGA	1 cut(s)	324
BveI	ACCTGC	1 cut(s)	460
Cac8I	GCNNGC	1 cut(s)	153
CfoI	GCGC	1 cut(s)	411
Cfr13I	GGNCC	5 cut(s)	67, 172, 387, 484, 736
Cfr42I	CCGCGG	1 cut(s)	418
CsiI	ACCWGGT	1 cut(s)	756
CviAII	CATG	4 cut(s)	297, 517, 553, 620
DdeI	CTNAG	3 cut(s)	63, 156, 730
DpnI	GATC	1 cut(s)	615
DpnII	GATC	1 cut(s)	613
EaeI	YGGCCR	1 cut(s)	312
EagI	CGGCCG	1 cut(s)	312
Eam1104I	CTCTTC	2 cut(s)	121, 248
EarI	CTCTTC	2 cut(s)	121, 248
EclXI	CGGCCG	1 cut(s)	312
Eco130I	CCWWGG	3 cut(s)	103, 296, 664
Eco147I	AGGCCT	1 cut(s)	669
Eco47I	GGWCC	2 cut(s)	172, 736
Eco52I	CGGCCG	1 cut(s)	312
Eco88I	CYCGRG	4 cut(s)	371, 384, 524, 646
EcoO109I	RGGNCCY	1 cut(s)	67
EcoRII	CCWGG	4 cut(s)	132, 404, 669, 756
EcoT14I	CCWWGG	3 cut(s)	103, 296, 664
ErhI	CCWWGG	3 cut(s)	103, 296, 664
FaeI	CATG	4 cut(s)	300, 520, 556, 623
FaiI	YATR	6 cut(s)	298, 393, 518, 545, 554, 621
FalI	AAGNNNNNCTT	2 cut(s)	422, 454
FatI	CATG	4 cut(s)	296, 516, 552, 619
FauI	CCCGC	1 cut(s)	336
FbaI	TGATCA	1 cut(s)	613
Fnu4HI	GCNGC	6 cut(s)	312, 381, 402, 418, 609, 776
FokI	GGATG	4 cut(s)	398, 686, 757, 764
Fsp4HI	GCNGC	6 cut(s)	312, 381, 402, 418, 609, 776
FspBI	CTAG	1 cut(s)	665
GlaI	GCGC	1 cut(s)	410
GluI	GCNGC	6 cut(s)	312, 381, 402, 418, 609, 776
GsaI	CCCAGC	1 cut(s)	490
GsuI	CTGGAG	1 cut(s)	476
HaeIII	GGCC	8 cut(s)	38, 69, 295, 314, 389, 428, 485, 669
HapII	CCGG	4 cut(s)	458, 470, 476, 725
HhaI	GCGC	1 cut(s)	411
Hin1II	CATG	4 cut(s)	300, 520, 556, 623
Hin6I	GCGC	1 cut(s)	409
HinP1I	GCGC	1 cut(s)	409
HinfI	GANTC	8 cut(s)	113, 319, 345, 656, 677, 708, 714, 728
HpaII	CCGG	4 cut(s)	458, 470, 476, 725
HphI	GGTGA	7 cut(s)	22, 178, 608, 709, 731, 761, 794
Hpy166II	GTNNAC	3 cut(s)	172, 707, 736
Hpy188I	TCNGA	6 cut(s)	25, 97, 159, 230, 356, 713
Hpy188III	TCNNGA	4 cut(s)	323, 524, 577, 646
Hpy8I	GTNNAC	3 cut(s)	172, 707, 736
Hpy99I	CGWCG	1 cut(s)	691
HpyAV	CCTTC	3 cut(s)	154, 370, 579
HpyCH4III	ACNGT	1 cut(s)	593
HpyCH4V	TGCA	3 cut(s)	236, 516, 536
HpyF10VI	GCNNNNNNNGC	8 cut(s)	129, 148, 161, 386, 417, 527, 637, 784
HpyF3I	CTNAG	3 cut(s)	63, 156, 730
Hsp92II	CATG	4 cut(s)	300, 520, 556, 623
HspAI	GCGC	1 cut(s)	409
Ksp22I	TGATCA	1 cut(s)	613
KspI	CCGCGG	1 cut(s)	418
Kzo9I	GATC	1 cut(s)	613
LmnI	GCTCC	4 cut(s)	472, 478, 495, 556
Lsp1109I	GCAGC	3 cut(s)	367, 595, 787
LweI	GCATC	3 cut(s)	420, 735, 796
MabI	ACCWGGT	1 cut(s)	756
MaeI	CTAG	1 cut(s)	665
MaeIII	GTNAC	2 cut(s)	184, 760
MalI	GATC	1 cut(s)	615
MboI	GATC	1 cut(s)	613
MboII	GAAGA	7 cut(s)	108, 226, 229, 251, 259, 265, 277
MlyI	GAGTC	6 cut(s)	107, 354, 665, 686, 702, 722
MmeI	TCCRAC	1 cut(s)	48
MroXI	GAANNNNTTC	1 cut(s)	584
MslI	CAYNNNNRTG	2 cut(s)	191, 624
MspA1I	CMGCKG	2 cut(s)	62, 417
MspI	CCGG	4 cut(s)	458, 470, 476, 725
MspR9I	CCNGG	5 cut(s)	134, 406, 458, 671, 758
MvaI	CCWGG	4 cut(s)	134, 406, 671, 758
MvnI	CGCG	2 cut(s)	324, 417
MwoI	GCNNNNNNNGC	8 cut(s)	129, 148, 161, 386, 417, 527, 637, 784
NciI	CCSGG	1 cut(s)	458
NcoI	CCATGG	1 cut(s)	296
NdeII	GATC	1 cut(s)	613
NlaIII	CATG	4 cut(s)	300, 520, 556, 623
NlaIV	GGNNCC	6 cut(s)	138, 174, 358, 462, 474, 558
NmeAIII	GCCGAG	1 cut(s)	340
NmuCI	GTSAC	1 cut(s)	184
NruI	TCGCGA	1 cut(s)	324
OliI	CACNNNNGTG	1 cut(s)	191
PaeR7I	CTCGAG	2 cut(s)	524, 646
PceI	AGGCCT	1 cut(s)	669
PdmI	GAANNNNTTC	1 cut(s)	584
PfeI	GAWTC	2 cut(s)	319, 714
PkrI	GCNGC	6 cut(s)	313, 382, 403, 419, 610, 777
PleI	GAGTC	6 cut(s)	107, 353, 664, 685, 702, 722
PpsI	GAGTC	6 cut(s)	107, 353, 664, 685, 702, 722
Psp6I	CCWGG	4 cut(s)	132, 404, 669, 756
PspFI	CCCAGC	1 cut(s)	486
PspGI	CCWGG	4 cut(s)	132, 404, 669, 756
PspN4I	GGNNCC	6 cut(s)	138, 174, 358, 462, 474, 558
PspPI	GGNCC	5 cut(s)	67, 172, 387, 484, 736
RruI	TCGCGA	1 cut(s)	324
RseI	CAYNNNNRTG	2 cut(s)	191, 624
SacII	CCGCGG	1 cut(s)	418
SatI	GCNGC	6 cut(s)	312, 381, 402, 418, 609, 776
Sau3AI	GATC	1 cut(s)	613
Sau96I	GGNCC	5 cut(s)	67, 172, 387, 484, 736
SchI	GAGTC	6 cut(s)	107, 354, 665, 686, 702, 722
ScrFI	CCNGG	5 cut(s)	134, 406, 458, 671, 758
SexAI	ACCWGGT	1 cut(s)	756
SfaNI	GCATC	3 cut(s)	420, 735, 796
SfcI	CTRYAG	2 cut(s)	274, 592
Sfr274I	CTCGAG	2 cut(s)	524, 646
Sfr303I	CCGCGG	1 cut(s)	418
SgrBI	CCGCGG	1 cut(s)	418
SinI	GGWCC	2 cut(s)	172, 736
SlaI	CTCGAG	2 cut(s)	524, 646
SmiMI	CAYNNNNRTG	2 cut(s)	191, 624
SmlI	CTYRAG	2 cut(s)	524, 646
SmoI	CTYRAG	2 cut(s)	524, 646
SseBI	AGGCCT	1 cut(s)	669
SsiI	CCGC	9 cut(s)	60, 130, 140, 311, 329, 402, 415, 417, 511
SspMI	CTAG	1 cut(s)	665
StuI	AGGCCT	1 cut(s)	669
StyD4I	CCNGG	5 cut(s)	132, 404, 456, 669, 756
StyI	CCWWGG	3 cut(s)	103, 296, 664
TaaI	ACNGT	1 cut(s)	593
TaqI	TCGA	4 cut(s)	197, 525, 647, 689
TauI	GCSGC	3 cut(s)	314, 404, 420
TfiI	GAWTC	2 cut(s)	319, 714
TscAI	CASTG	2 cut(s)	687, 738
TseFI	GTSAC	1 cut(s)	184
TseI	GCWGC	3 cut(s)	380, 608, 775
Tsp45I	GTSAC	1 cut(s)	184
TspDTI	ATGAA	2 cut(s)	411, 561
TspRI	CASTG	2 cut(s)	687, 738
VpaK11BI	GGWCC	2 cut(s)	172, 736
XcmI	CCANNNNNNNNNTGG	1 cut(s)	303
XhoI	CTCGAG	2 cut(s)	524, 646
XmaJI	CCTAGG	1 cut(s)	664
XmnI	GAANNNNTTC	1 cut(s)	584
XspI	CTAG	1 cut(s)	665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.