Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0011185

Physical Location & Seq

Genomic Coordinates Forward (+)

46186482 .. 46188362

Gene Structure 1881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG248800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGTGTGGAGGTGCCATCATTTCCGACTTCACCGAGGCCAAGCGTGGCTGGAAGCTGACCGCTGAGGGCCTCTGTTTTGAGCTTGACACCATCTCTGACCTCCTTGGCTTGGACTCTTCCAGCAACAACCGCCAGGTTCCGCACCACAAGCTCGCTCAGAAGGCAAAGGTGGACCCAAATCCAGTCACCAAAGTTGCAGTGTCGAGTGAAATCAAGGAGAAGAAGACAAGTATCGGAGTTGCAGAAGATGGGAAGACGAAGAGAGTGAGGAAGAACATCTACAGAGGAATAAGGCAGAGGCCATGGGGTAAATGGGCGGCCGAGATTCGCGACCCGCACAAAGGCGTAAGAGTCTGGCTCGGAACCTTCAACACACCCGAGGAAGCTGCTCGGGCCTATGATGAAGCCGCCAGGCGCATCCGCGGCGACAAGGCCAAGCTCAACTTCCCTCCACAACCTGCCCCGGTTCCTGCTCCGGCTTCGGCTTCGGCTTCGGCCCAGCTCCAGCCACCCTCCAAGAAGCGGTGCATGGCTCTCGAGTCGACTGCACCAGCTATGATGGGCATGGAGCCTTACTATCCTTCATTCCAGAATGAGTTCTACCGTAAGAGTGAGACTGCTGCTGGTCACCATGAGTTTGAGCTGAAAGAGCAAATCTCGAGCTTGGAGTCTTTCCTGGGCCTGGATGAGTCAGTGTCGTCGAATGAGGTGATGAGTGGACTCGGAATCGGAGAGCCGGACTCAGTGGACCTTTGGATGCTGGATGACCTGGTTACACATCACCAGCAGCAAGGTCGTGAGCATCAGCTCGTGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009753 GO:0009755 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010286 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032870 GO:0035556 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071944 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

272

Amino Acids

30.18

Weight (kDa)

7.1

Isoelectric Point (pI)

49.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	94 - 142	1.2e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16770
fragaria_vesca	FvH4_4g18780
malus_domestica	MD13G1163300.v1.1 MD16G1162800.v1.1 MD16G1162900.v1.1
prunus_persica	Prupe.1G130300_v2.0.a1 Prupe.1G130300_v2.0.a1
pyrus_communis	pycom13g13920 pycom16g13800
rosa_chinensis	RchiOBHm_Chr4g0423581
rosa_laevigata	RLG00000007545
rosa_multiflora	Rmu_sc0000464.1_g000024 Rmu_sc0004342.1_g000003
rosa_roxburghii	Rroxscaffold_5G00365800
rosa_rugosa	Rorug04G0188800
rosa_samantha	Rh4AG248300 Rh4BG253500 Rh4CG261600 Rh4DG248800
rosa_wichuraiana	Rw4G021270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	466
AccB1I	GGYRCC	1 cut(s)	11
AccI	GTMKAC	1 cut(s)	542
AccII	CGCG	2 cut(s)	330, 423
AciI	CCGC	9 cut(s)	60, 130, 140, 317, 335, 408, 421, 423, 523
AcoI	YGGCCR	1 cut(s)	318
AfiI	CCNNNNNNNGG	4 cut(s)	109, 341, 522, 682
AgsI	TTSAA	1 cut(s)	370
AjnI	CCWGG	5 cut(s)	132, 410, 675, 681, 768
AjuI	GAANNNNNNNTTGG	2 cut(s)	428, 460
Alw26I	GTCTC	1 cut(s)	608
Ama87I	CYCGRG	4 cut(s)	377, 390, 536, 658
AoxI	GGCC	8 cut(s)	36, 67, 299, 318, 393, 432, 495, 679
ApeKI	GCWGC	3 cut(s)	386, 620, 787
Asp700I	GAANNNNTTC	1 cut(s)	596
AspLEI	GCGC	1 cut(s)	417
AspS9I	GGNCC	6 cut(s)	67, 172, 393, 496, 679, 748
AsuC2I	CCSGG	1 cut(s)	464
AsuHPI	GGTGA	5 cut(s)	22, 178, 620, 721, 773
AvaI	CYCGRG	4 cut(s)	377, 390, 536, 658
AvaII	GGWCC	2 cut(s)	172, 748
BanI	GGYRCC	1 cut(s)	11
BarI	GAAGNNNNNNTAC	2 cut(s)	263, 295
BauI	CACGAG	1 cut(s)	809
BbsI	GAAGAC	2 cut(s)	230, 260
BbvCI	CCTCAGC	1 cut(s)	63
BbvI	GCAGC	3 cut(s)	373, 607, 799
BccI	CCATC	4 cut(s)	23, 98, 242, 553
BcgI	CGANNNNNNTGC	8 cut(s)	368, 402, 517, 527, 551, 561, 776, 810
BciT130I	CCWGG	5 cut(s)	134, 412, 677, 683, 770
BcnI	CCSGG	1 cut(s)	464
BcoDI	GTCTC	1 cut(s)	608
BfmI	CTRYAG	1 cut(s)	280
BfuAI	ACCTGC	1 cut(s)	466
BisI	GCNGC	6 cut(s)	318, 387, 408, 424, 621, 788
BlsI	GCNGC	6 cut(s)	319, 388, 409, 425, 622, 789
Bme1390I	CCNGG	6 cut(s)	134, 412, 464, 677, 683, 770
Bme18I	GGWCC	2 cut(s)	172, 748
BmeT110I	CYCGRG	4 cut(s)	377, 390, 536, 658
BmgT120I	GGNCC	6 cut(s)	67, 172, 393, 496, 679, 748
BmiI	GGNNCC	6 cut(s)	13, 138, 174, 364, 468, 570
BmrFI	CCNGG	6 cut(s)	134, 412, 464, 677, 683, 770
BmsI	GCATC	3 cut(s)	426, 747, 811
BpiI	GAAGAC	2 cut(s)	230, 260
BplI	GAGNNNNNCTC	6 cut(s)	342, 374, 641, 673, 725, 757
BpmI	CTGGAG	1 cut(s)	488
Bpu10I	CCTNAGC	1 cut(s)	63
BpuMI	CCSGG	1 cut(s)	464
BsaJI	CCNNGG	7 cut(s)	33, 103, 302, 378, 421, 462, 676
Bsc4I	CCNNNNNNNGG	4 cut(s)	109, 341, 522, 682
Bse1I	ACTGG	1 cut(s)	182
BseBI	CCWGG	5 cut(s)	134, 412, 677, 683, 770
BseDI	CCNNGG	7 cut(s)	33, 103, 302, 378, 421, 462, 676
BseGI	GGATG	4 cut(s)	417, 691, 762, 769
BseLI	CCNNNNNNNGG	4 cut(s)	109, 341, 522, 682
BseMII	CTCAG	3 cut(s)	54, 170, 756
BseNI	ACTGG	1 cut(s)	182
BseX3I	CGGCCG	1 cut(s)	318
BseXI	GCAGC	3 cut(s)	373, 607, 799
BseYI	CCCAGC	1 cut(s)	498
BsgI	GTGCAG	1 cut(s)	531
Bsh1236I	CGCG	2 cut(s)	330, 423
Bsh1285I	CGRYCG	1 cut(s)	321
BshFI	GGCC	8 cut(s)	38, 69, 301, 320, 395, 434, 497, 681
BshNI	GGYRCC	1 cut(s)	11
BsiEI	CGRYCG	1 cut(s)	321
BsiHKCI	CYCGRG	4 cut(s)	377, 390, 536, 658
BsiSI	CCGG	3 cut(s)	464, 476, 737
BslI	CCNNNNNNNGG	4 cut(s)	109, 341, 522, 682
BsmAI	GTCTC	1 cut(s)	608
BsnI	GGCC	8 cut(s)	38, 69, 301, 320, 395, 434, 497, 681
BsoBI	CYCGRG	4 cut(s)	377, 390, 536, 658
Bsp19I	CCATGG	1 cut(s)	302
Bsp68I	TCGCGA	1 cut(s)	330
BspACI	CCGC	9 cut(s)	60, 130, 140, 317, 335, 408, 421, 423, 523
BspANI	GGCC	8 cut(s)	38, 69, 301, 320, 395, 434, 497, 681
BspCNI	CTCAG	3 cut(s)	55, 169, 755
BspFNI	CGCG	2 cut(s)	330, 423
BspLI	GGNNCC	6 cut(s)	13, 138, 174, 364, 468, 570
BspMI	ACCTGC	1 cut(s)	466
BspT107I	GGYRCC	1 cut(s)	11
BsrI	ACTGG	1 cut(s)	182
BssECI	CCNNGG	7 cut(s)	33, 103, 302, 378, 421, 462, 676
BssSI	CACGAG	1 cut(s)	809
BssT1I	CCWWGG	2 cut(s)	103, 302
Bst2BI	CACGAG	1 cut(s)	809
Bst2UI	CCWGG	5 cut(s)	134, 412, 677, 683, 770
Bst4CI	ACNGT	1 cut(s)	605
Bst6I	CTCTTC	2 cut(s)	121, 254
BstC8I	GCNNGC	1 cut(s)	153
BstDEI	CTNAG	3 cut(s)	63, 156, 742
BstDSI	CCRYGG	2 cut(s)	302, 421
BstEII	GGTNACC	1 cut(s)	626
BstF5I	GGATG	4 cut(s)	417, 691, 762, 769
BstFNI	CGCG	2 cut(s)	330, 423
BstHHI	GCGC	1 cut(s)	417
BstMAI	GTCTC	1 cut(s)	608
BstMCI	CGRYCG	1 cut(s)	321
BstMWI	GCNNNNNNNGC	6 cut(s)	129, 148, 161, 392, 423, 649
BstNI	CCWGG	5 cut(s)	134, 412, 677, 683, 770
BstPI	GGTNACC	1 cut(s)	626
BstSCI	CCNGG	6 cut(s)	132, 410, 462, 675, 681, 768
BstSFI	CTRYAG	1 cut(s)	280
BstUI	CGCG	2 cut(s)	330, 423
BstV1I	GCAGC	3 cut(s)	373, 607, 799
BstV2I	GAAGAC	2 cut(s)	230, 260
BstZI	CGGCCG	1 cut(s)	318
BsuRI	GGCC	8 cut(s)	38, 69, 301, 320, 395, 434, 497, 681
BtgI	CCRYGG	2 cut(s)	302, 421
BtsCI	GGATG	4 cut(s)	417, 691, 762, 769
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	3 cut(s)	204, 699, 750
BtuMI	TCGCGA	1 cut(s)	330
BveI	ACCTGC	1 cut(s)	466
Cac8I	GCNNGC	1 cut(s)	153
CfoI	GCGC	1 cut(s)	417
Cfr13I	GGNCC	6 cut(s)	67, 172, 393, 496, 679, 748
Cfr42I	CCGCGG	1 cut(s)	424
CsiI	ACCWGGT	1 cut(s)	768
CviAII	CATG	4 cut(s)	303, 529, 565, 632
DdeI	CTNAG	3 cut(s)	63, 156, 742
EaeI	YGGCCR	1 cut(s)	318
EagI	CGGCCG	1 cut(s)	318
Eam1104I	CTCTTC	2 cut(s)	121, 254
EarI	CTCTTC	2 cut(s)	121, 254
EclXI	CGGCCG	1 cut(s)	318
Eco130I	CCWWGG	2 cut(s)	103, 302
Eco47I	GGWCC	2 cut(s)	172, 748
Eco52I	CGGCCG	1 cut(s)	318
Eco88I	CYCGRG	4 cut(s)	377, 390, 536, 658
Eco91I	GGTNACC	1 cut(s)	626
EcoO109I	RGGNCCY	1 cut(s)	67
EcoO65I	GGTNACC	1 cut(s)	626
EcoRII	CCWGG	5 cut(s)	132, 410, 675, 681, 768
EcoT14I	CCWWGG	2 cut(s)	103, 302
ErhI	CCWWGG	2 cut(s)	103, 302
FaeI	CATG	4 cut(s)	306, 532, 568, 635
FaiI	YATR	6 cut(s)	304, 399, 530, 557, 566, 633
FalI	AAGNNNNNCTT	2 cut(s)	428, 460
FatI	CATG	4 cut(s)	302, 528, 564, 631
FauI	CCCGC	1 cut(s)	342
FblI	GTMKAC	1 cut(s)	542
Fnu4HI	GCNGC	6 cut(s)	318, 387, 408, 424, 621, 788
FokI	GGATG	4 cut(s)	404, 698, 769, 776
Fsp4HI	GCNGC	6 cut(s)	318, 387, 408, 424, 621, 788
GlaI	GCGC	1 cut(s)	416
GluI	GCNGC	6 cut(s)	318, 387, 408, 424, 621, 788
GsaI	CCCAGC	1 cut(s)	502
GsuI	CTGGAG	1 cut(s)	488
HaeIII	GGCC	8 cut(s)	38, 69, 301, 320, 395, 434, 497, 681
HapII	CCGG	3 cut(s)	464, 476, 737
HhaI	GCGC	1 cut(s)	417
Hin1II	CATG	4 cut(s)	306, 532, 568, 635
Hin6I	GCGC	1 cut(s)	415
HinP1I	GCGC	1 cut(s)	415
HincII	GTYRAC	1 cut(s)	543
HindII	GTYRAC	1 cut(s)	543
HinfI	GANTC	9 cut(s)	113, 325, 351, 539, 668, 689, 720, 726, 740
HpaII	CCGG	3 cut(s)	464, 476, 737
HphI	GGTGA	5 cut(s)	22, 178, 620, 721, 773
Hpy166II	GTNNAC	4 cut(s)	172, 543, 719, 748
Hpy188I	TCNGA	7 cut(s)	25, 97, 159, 236, 362, 725, 731
Hpy188III	TCNNGA	5 cut(s)	329, 536, 589, 658, 797
Hpy8I	GTNNAC	4 cut(s)	172, 543, 719, 748
Hpy99I	CGWCG	1 cut(s)	703
HpyAV	CCTTC	3 cut(s)	154, 376, 591
HpyCH4III	ACNGT	1 cut(s)	605
HpyCH4V	TGCA	4 cut(s)	197, 242, 528, 548
HpyF10VI	GCNNNNNNNGC	6 cut(s)	129, 148, 161, 392, 423, 649
HpyF3I	CTNAG	3 cut(s)	63, 156, 742
Hsp92II	CATG	4 cut(s)	306, 532, 568, 635
HspAI	GCGC	1 cut(s)	415
KspI	CCGCGG	1 cut(s)	424
LmnI	GCTCC	3 cut(s)	478, 507, 568
Lsp1109I	GCAGC	3 cut(s)	373, 607, 799
LweI	GCATC	3 cut(s)	426, 747, 811
MabI	ACCWGGT	1 cut(s)	768
MaeIII	GTNAC	3 cut(s)	184, 626, 772
MboII	GAAGA	7 cut(s)	108, 232, 235, 257, 265, 271, 283
MlyI	GAGTC	7 cut(s)	107, 360, 548, 677, 698, 714, 734
MmeI	TCCRAC	1 cut(s)	48
MroXI	GAANNNNTTC	1 cut(s)	596
MspA1I	CMGCKG	2 cut(s)	62, 423
MspI	CCGG	3 cut(s)	464, 476, 737
MspR9I	CCNGG	6 cut(s)	134, 412, 464, 677, 683, 770
MvaI	CCWGG	5 cut(s)	134, 412, 677, 683, 770
MvnI	CGCG	2 cut(s)	330, 423
MwoI	GCNNNNNNNGC	6 cut(s)	129, 148, 161, 392, 423, 649
NciI	CCSGG	1 cut(s)	464
NcoI	CCATGG	1 cut(s)	302
NlaIII	CATG	4 cut(s)	306, 532, 568, 635
NlaIV	GGNNCC	6 cut(s)	13, 138, 174, 364, 468, 570
NmeAIII	GCCGAG	1 cut(s)	346
NmuCI	GTSAC	2 cut(s)	184, 626
NruI	TCGCGA	1 cut(s)	330
PaeR7I	CTCGAG	2 cut(s)	536, 658
PdmI	GAANNNNTTC	1 cut(s)	596
PfeI	GAWTC	2 cut(s)	325, 726
PkrI	GCNGC	6 cut(s)	319, 388, 409, 425, 622, 789
PleI	GAGTC	7 cut(s)	107, 359, 547, 676, 697, 714, 734
PpsI	GAGTC	7 cut(s)	107, 359, 547, 676, 697, 714, 734
Psp6I	CCWGG	5 cut(s)	132, 410, 675, 681, 768
PspEI	GGTNACC	1 cut(s)	626
PspFI	CCCAGC	1 cut(s)	498
PspGI	CCWGG	5 cut(s)	132, 410, 675, 681, 768
PspN4I	GGNNCC	6 cut(s)	13, 138, 174, 364, 468, 570
PspPI	GGNCC	6 cut(s)	67, 172, 393, 496, 679, 748
RruI	TCGCGA	1 cut(s)	330
SacII	CCGCGG	1 cut(s)	424
SalI	GTCGAC	1 cut(s)	541
SatI	GCNGC	6 cut(s)	318, 387, 408, 424, 621, 788
Sau96I	GGNCC	6 cut(s)	67, 172, 393, 496, 679, 748
SchI	GAGTC	7 cut(s)	107, 360, 548, 677, 698, 714, 734
ScrFI	CCNGG	6 cut(s)	134, 412, 464, 677, 683, 770
SexAI	ACCWGGT	1 cut(s)	768
SfaNI	GCATC	3 cut(s)	426, 747, 811
SfcI	CTRYAG	1 cut(s)	280
Sfr274I	CTCGAG	2 cut(s)	536, 658
Sfr303I	CCGCGG	1 cut(s)	424
SgrBI	CCGCGG	1 cut(s)	424
SinI	GGWCC	2 cut(s)	172, 748
SlaI	CTCGAG	2 cut(s)	536, 658
SmlI	CTYRAG	2 cut(s)	536, 658
SmoI	CTYRAG	2 cut(s)	536, 658
SsiI	CCGC	9 cut(s)	60, 130, 140, 317, 335, 408, 421, 423, 523
StyD4I	CCNGG	6 cut(s)	132, 410, 462, 675, 681, 768
StyI	CCWWGG	2 cut(s)	103, 302
TaaI	ACNGT	1 cut(s)	605
TaqI	TCGA	5 cut(s)	203, 537, 542, 659, 701
TauI	GCSGC	3 cut(s)	320, 410, 426
TfiI	GAWTC	2 cut(s)	325, 726
TscAI	CASTG	3 cut(s)	204, 699, 750
TseFI	GTSAC	2 cut(s)	184, 626
TseI	GCWGC	3 cut(s)	386, 620, 787
Tsp45I	GTSAC	2 cut(s)	184, 626
TspDTI	ATGAA	2 cut(s)	417, 573
TspRI	CASTG	3 cut(s)	204, 699, 750
VpaK11BI	GGWCC	2 cut(s)	172, 748
XcmI	CCANNNNNNNNNTGG	1 cut(s)	309
XhoI	CTCGAG	2 cut(s)	536, 658
XmiI	GTMKAC	1 cut(s)	542
XmnI	GAANNNNTTC	1 cut(s)	596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.