Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0011185

Physical Location & Seq

Genomic Coordinates Reverse (-)

13290133 .. 13291981

Gene Structure 1849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1162800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGTGTGGTGGTGCTATCATTTCCGACTTCATCGCCGCCAAGCGTGGCCGGAAGCTGACGGAGAAGGACCTCTGGTCGGAGCTTGACACCATCTCTGACCTCCTCGGCATAGACCACTCCAACAGCATCAACAAACAGCCTGAGGATTACAAGGTGGTCCAGAAGCCCAAACCATCAGTCACCAAAGCGACAAGTGATGCGAAGCCCAAGAAGGCCACCGGGGCAGCTGCCGCTGCTGCTGCAGAAGGCAAGAGAGTGAGGAAAAATGTGTACAGAGGAATAAGGCAGAGGCCGTGGGGCAAATGGGCGGCTGAGATTCGCGACCCCCGCAAAGGCGTCCGAGTCTGGCTCGGCACCTACAACACCGCCGAGGAAGCCGCCCGCGCCTACGACGAAGCTGCCGTGCGCATCCGCGGCGACAAGGCCAAGCTCAACTTTTCACAACCACCACCCTCTTCACTGCTTCCACCTCTGGCTCCGGCTACGCCGCCGCCGACAAAGAAGCGGTGCATTGTTGCTGAATCAACTCGGGTGGAGTCGACTCAGCCGAGTTTCCACACCGGTTCTTACTATTATGATACATTTTATCAGGGTGACGGTGATATGTATGCTAAGAATGAGGTGGCGGATGGTGACGGAGGGTATGAGCTGAAGGAGCAAATATCGAGCTTGGAGTCGTTCTTGGGGCTGGATGAGGTGGTGGCGGAGCAGCCGAGTCAGGTGGTGAGTGGAAGCGGTGACTCGGACTCGTTGGACCCGTGGATGCTGGATAACCTGGTGACGCACCTGCAACAGCAACAGCAACGGGGGCAGTTTCTGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009753 GO:0009755 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010286 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032870 GO:0035556 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071944 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

275

Amino Acids

30.17

Weight (kDa)

7.68

Isoelectric Point (pI)

39.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	90 - 139	2.1e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16770
fragaria_vesca	FvH4_4g18780
malus_domestica	MD13G1163300.v1.1 MD16G1162800.v1.1 MD16G1162900.v1.1
prunus_persica	Prupe.1G130300_v2.0.a1 Prupe.1G130300_v2.0.a1
pyrus_communis	pycom13g13920 pycom16g13800
rosa_chinensis	RchiOBHm_Chr4g0423581
rosa_laevigata	RLG00000007545
rosa_multiflora	Rmu_sc0000464.1_g000024 Rmu_sc0004342.1_g000003
rosa_roxburghii	Rroxscaffold_5G00365800
rosa_rugosa	Rorug04G0188800
rosa_samantha	Rh4AG248300 Rh4BG253500 Rh4CG261600 Rh4DG248800
rosa_wichuraiana	Rw4G021270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	795
Acc16I	TGCGCA	1 cut(s)	407
Acc36I	ACCTGC	1 cut(s)	795
AccB1I	GGYRCC	1 cut(s)	353
AccI	GTMKAC	1 cut(s)	539
AccII	CGCG	3 cut(s)	321, 384, 414
AcoI	YGGCCR	1 cut(s)	46
AcuI	CTGAAG	1 cut(s)	671
AcyI	GRCGYC	1 cut(s)	336
AfaI	GTAC	1 cut(s)	272
AfiI	CCNNNNNNNGG	2 cut(s)	76, 332
AgeI	ACCGGT	1 cut(s)	560
AhdI	GACNNNNNGTC	1 cut(s)	73
AjnI	CCWGG	1 cut(s)	774
AluBI	AGCT	7 cut(s)	55, 82, 227, 398, 430, 649, 669
AluI	AGCT	7 cut(s)	55, 82, 227, 398, 430, 649, 669
AlwNI	CAGNNNCTG	1 cut(s)	817
Ama87I	CYCGRG	1 cut(s)	528
AoxI	GGCC	4 cut(s)	46, 213, 290, 423
ApeKI	GCWGC	7 cut(s)	224, 227, 233, 236, 239, 398, 709
ArsI	GACNNNNNNTTYG	2 cut(s)	162, 194
AsiGI	ACCGGT	1 cut(s)	560
AspLEI	GCGC	2 cut(s)	386, 408
AspS9I	GGNCC	3 cut(s)	67, 157, 754
AsuC2I	CCSGG	1 cut(s)	220
AsuHPI	GGTGA	7 cut(s)	172, 605, 611, 644, 736, 749, 790
AvaI	CYCGRG	1 cut(s)	528
AvaII	GGWCC	3 cut(s)	67, 157, 754
AxyI	CCTNAGG	1 cut(s)	141
BanI	GGYRCC	1 cut(s)	353
BbvI	GCAGC	7 cut(s)	214, 220, 223, 226, 236, 385, 721
BccI	CCATC	3 cut(s)	98, 181, 623
BceAI	ACGGC	2 cut(s)	277, 386
BcgI	CGANNNNNNTGC	2 cut(s)	380, 414
BciT130I	CCWGG	1 cut(s)	776
BcnI	CCSGG	1 cut(s)	220
BfmI	CTRYAG	1 cut(s)	240
BfuAI	ACCTGC	1 cut(s)	795
BglI	GCCNNNNNGGC	1 cut(s)	221
Bme1390I	CCNGG	2 cut(s)	220, 776
Bme18I	GGWCC	3 cut(s)	67, 157, 754
BmeRI	GACNNNNNGTC	1 cut(s)	73
BmeT110I	CYCGRG	1 cut(s)	528
BmgT120I	GGNCC	3 cut(s)	67, 157, 754
BmiI	GGNNCC	3 cut(s)	355, 477, 756
BmrFI	CCNGG	2 cut(s)	220, 776
BmsI	GCATC	4 cut(s)	135, 187, 417, 753
BplI	GAGNNNNNCTC	2 cut(s)	333, 365
BpuMI	CCSGG	1 cut(s)	220
BsaHI	GRCGYC	1 cut(s)	336
BsaJI	CCNNGG	6 cut(s)	103, 219, 293, 369, 412, 758
BsaWI	WCCGGW	1 cut(s)	560
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 332
Bse118I	RCCGGY	1 cut(s)	560
Bse21I	CCTNAGG	1 cut(s)	141
BseBI	CCWGG	1 cut(s)	776
BseDI	CCNNGG	6 cut(s)	103, 219, 293, 369, 412, 758
BseGI	GGATG	4 cut(s)	408, 634, 697, 768
BseLI	CCNNNNNNNGG	2 cut(s)	76, 332
BseMII	CTCAG	3 cut(s)	132, 303, 557
BseRI	GAGGAG	1 cut(s)	92
BseXI	GCAGC	7 cut(s)	214, 220, 223, 226, 236, 385, 721
Bsh1236I	CGCG	3 cut(s)	321, 384, 414
BshFI	GGCC	4 cut(s)	48, 215, 292, 425
BshNI	GGYRCC	1 cut(s)	353
BshTI	ACCGGT	1 cut(s)	560
BsiHKCI	CYCGRG	1 cut(s)	528
BsiSI	CCGG	4 cut(s)	49, 219, 479, 561
BslI	CCNNNNNNNGG	2 cut(s)	76, 332
BsnI	GGCC	4 cut(s)	48, 215, 292, 425
BsoBI	CYCGRG	1 cut(s)	528
Bsp1407I	TGTACA	1 cut(s)	270
Bsp68I	TCGCGA	1 cut(s)	321
BspANI	GGCC	4 cut(s)	48, 215, 292, 425
BspCNI	CTCAG	3 cut(s)	133, 304, 556
BspFNI	CGCG	3 cut(s)	321, 384, 414
BspLI	GGNNCC	3 cut(s)	355, 477, 756
BspMAI	CTGCAG	1 cut(s)	244
BspMI	ACCTGC	1 cut(s)	795
BspT107I	GGYRCC	1 cut(s)	353
BsrFI	RCCGGY	1 cut(s)	560
BsrGI	TGTACA	1 cut(s)	270
BssAI	RCCGGY	1 cut(s)	560
BssECI	CCNNGG	6 cut(s)	103, 219, 293, 369, 412, 758
BssNI	GRCGYC	1 cut(s)	336
Bst2UI	CCWGG	1 cut(s)	776
Bst4CI	ACNGT	1 cut(s)	599
Bst6I	CTCTTC	1 cut(s)	460
BstACI	GRCGYC	1 cut(s)	336
BstAUI	TGTACA	1 cut(s)	270
BstC8I	GCNNGC	1 cut(s)	382
BstDEI	CTNAG	4 cut(s)	141, 312, 543, 612
BstDSI	CCRYGG	3 cut(s)	293, 412, 758
BstF5I	GGATG	4 cut(s)	408, 634, 697, 768
BstFNI	CGCG	3 cut(s)	321, 384, 414
BstHHI	GCGC	2 cut(s)	386, 408
BstNI	CCWGG	1 cut(s)	776
BstSCI	CCNGG	2 cut(s)	218, 774
BstSFI	CTRYAG	1 cut(s)	240
BstUI	CGCG	3 cut(s)	321, 384, 414
BstV1I	GCAGC	7 cut(s)	214, 220, 223, 226, 236, 385, 721
Bsu36I	CCTNAGG	1 cut(s)	141
BsuRI	GGCC	4 cut(s)	48, 215, 292, 425
BtgI	CCRYGG	3 cut(s)	293, 412, 758
BtgZI	GCGATG	1 cut(s)	16
BtsCI	GGATG	4 cut(s)	408, 634, 697, 768
BtsI	GCAGTG	1 cut(s)	458
BtsIMutI	CAGTG	1 cut(s)	458
BtuMI	TCGCGA	1 cut(s)	321
BveI	ACCTGC	1 cut(s)	795
Cac8I	GCNNGC	1 cut(s)	382
CaiI	CAGNNNCTG	1 cut(s)	817
CfoI	GCGC	2 cut(s)	386, 408
Cfr10I	RCCGGY	1 cut(s)	560
Cfr13I	GGNCC	3 cut(s)	67, 157, 754
Cfr42I	CCGCGG	1 cut(s)	415
CseI	GACGC	2 cut(s)	325, 790
CsiI	ACCWGGT	1 cut(s)	774
Csp6I	GTAC	1 cut(s)	271
CspAI	ACCGGT	1 cut(s)	560
CspCI	CAANNNNNGTGG	2 cut(s)	513, 548
CviQI	GTAC	1 cut(s)	271
DdeI	CTNAG	4 cut(s)	141, 312, 543, 612
DriI	GACNNNNNGTC	1 cut(s)	73
EaeI	YGGCCR	1 cut(s)	46
Eam1104I	CTCTTC	1 cut(s)	460
Eam1105I	GACNNNNNGTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	460
EciI	GGCGGA	2 cut(s)	641, 719
Eco47I	GGWCC	3 cut(s)	67, 157, 754
Eco57I	CTGAAG	1 cut(s)	671
Eco81I	CCTNAGG	1 cut(s)	141
Eco88I	CYCGRG	1 cut(s)	528
EcoO109I	RGGNCCY	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	774
FaiI	YATR	5 cut(s)	110, 576, 605, 609, 645
FalI	AAGNNNNNCTT	2 cut(s)	419, 451
FauI	CCCGC	2 cut(s)	335, 389
FblI	GTMKAC	1 cut(s)	539
FokI	GGATG	4 cut(s)	395, 641, 704, 775
FspAI	RTGCGCAY	1 cut(s)	407
FspI	TGCGCA	1 cut(s)	407
GlaI	GCGC	2 cut(s)	385, 407
HaeIII	GGCC	4 cut(s)	48, 215, 292, 425
HapII	CCGG	4 cut(s)	49, 219, 479, 561
HgaI	GACGC	2 cut(s)	325, 790
HhaI	GCGC	2 cut(s)	386, 408
Hin1I	GRCGYC	1 cut(s)	336
Hin6I	GCGC	2 cut(s)	384, 406
HinP1I	GCGC	2 cut(s)	384, 406
HincII	GTYRAC	1 cut(s)	540
HindII	GTYRAC	1 cut(s)	540
HinfI	GANTC	9 cut(s)	316, 342, 521, 536, 541, 674, 715, 740, 746
HpaII	CCGG	4 cut(s)	49, 219, 479, 561
HphI	GGTGA	7 cut(s)	172, 605, 611, 644, 736, 749, 790
Hpy166II	GTNNAC	2 cut(s)	271, 540
Hpy188I	TCNGA	5 cut(s)	25, 79, 97, 341, 745
Hpy188III	TCNNGA	2 cut(s)	160, 320
Hpy8I	GTNNAC	2 cut(s)	271, 540
Hpy99I	CGWCG	1 cut(s)	395
HpyAV	CCTTC	4 cut(s)	58, 205, 239, 646
HpyCH4III	ACNGT	1 cut(s)	599
HpyCH4V	TGCA	3 cut(s)	242, 510, 790
HpyF3I	CTNAG	4 cut(s)	141, 312, 543, 612
Hsp92I	GRCGYC	1 cut(s)	336
HspAI	GCGC	2 cut(s)	384, 406
KspI	CCGCGG	1 cut(s)	415
LmnI	GCTCC	4 cut(s)	79, 481, 655, 706
Lsp1109I	GCAGC	7 cut(s)	214, 220, 223, 226, 236, 385, 721
LweI	GCATC	4 cut(s)	135, 187, 417, 753
MabI	ACCWGGT	1 cut(s)	774
MaeIII	GTNAC	5 cut(s)	178, 593, 632, 737, 778
MboII	GAAGA	1 cut(s)	447
MlyI	GAGTC	7 cut(s)	351, 535, 545, 683, 724, 734, 740
MmeI	TCCRAC	4 cut(s)	48, 57, 144, 732
MseI	TTAA	1 cut(s)	823
MspA1I	CMGCKG	3 cut(s)	227, 233, 414
MspI	CCGG	4 cut(s)	49, 219, 479, 561
MspR9I	CCNGG	2 cut(s)	220, 776
MvaI	CCWGG	1 cut(s)	776
MvnI	CGCG	3 cut(s)	321, 384, 414
NciI	CCSGG	1 cut(s)	220
NlaIV	GGNNCC	3 cut(s)	355, 477, 756
NmeAIII	GCCGAG	5 cut(s)	84, 330, 394, 573, 738
NmuCI	GTSAC	5 cut(s)	178, 593, 632, 737, 778
NruI	TCGCGA	1 cut(s)	321
NsbI	TGCGCA	1 cut(s)	407
PaqCI	CACCTGC	1 cut(s)	795
PcsI	WCGNNNNNNNCGW	4 cut(s)	399, 491, 545, 755
PfeI	GAWTC	2 cut(s)	316, 521
PinAI	ACCGGT	1 cut(s)	560
PleI	GAGTC	7 cut(s)	350, 535, 544, 682, 723, 734, 740
PpsI	GAGTC	7 cut(s)	350, 535, 544, 682, 723, 734, 740
PpuMI	RGGWCCY	1 cut(s)	67
Psp5II	RGGWCCY	1 cut(s)	67
Psp6I	CCWGG	1 cut(s)	774
PspGI	CCWGG	1 cut(s)	774
PspN4I	GGNNCC	3 cut(s)	355, 477, 756
PspPI	GGNCC	3 cut(s)	67, 157, 754
PspPPI	RGGWCCY	1 cut(s)	67
PstI	CTGCAG	1 cut(s)	244
PstNI	CAGNNNCTG	1 cut(s)	817
PvuII	CAGCTG	1 cut(s)	227
RruI	TCGCGA	1 cut(s)	321
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
SacII	CCGCGG	1 cut(s)	415
SalI	GTCGAC	1 cut(s)	538
SaqAI	TTAA	1 cut(s)	823
Sau96I	GGNCC	3 cut(s)	67, 157, 754
SchI	GAGTC	7 cut(s)	351, 535, 545, 683, 724, 734, 740
ScrFI	CCNGG	2 cut(s)	220, 776
SexAI	ACCWGGT	1 cut(s)	774
SfaNI	GCATC	4 cut(s)	135, 187, 417, 753
SfcI	CTRYAG	1 cut(s)	240
Sfr303I	CCGCGG	1 cut(s)	415
SgrBI	CCGCGG	1 cut(s)	415
SinI	GGWCC	3 cut(s)	67, 157, 754
StyD4I	CCNGG	2 cut(s)	218, 774
TaaI	ACNGT	1 cut(s)	599
TaqI	TCGA	2 cut(s)	539, 665
TatI	WGTACW	1 cut(s)	270
TauI	GCSGC	7 cut(s)	38, 233, 311, 380, 417, 490, 493
TfiI	GAWTC	2 cut(s)	316, 521
Tru1I	TTAA	1 cut(s)	823
Tru9I	TTAA	1 cut(s)	823
TscAI	CASTG	1 cut(s)	465
TseFI	GTSAC	5 cut(s)	178, 593, 632, 737, 778
TseI	GCWGC	7 cut(s)	224, 227, 233, 236, 239, 398, 709
Tsp45I	GTSAC	5 cut(s)	178, 593, 632, 737, 778
TspDTI	ATGAA	1 cut(s)	19
TspGWI	ACGGA	2 cut(s)	74, 651
TspRI	CASTG	1 cut(s)	465
VpaK11BI	GGWCC	3 cut(s)	67, 157, 754
XmiI	GTMKAC	1 cut(s)	539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.