Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0011185

Physical Location & Seq

Genomic Coordinates Forward (+)

45938605 .. 45940183

Gene Structure 1579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G021270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGCAAAGTAATGCAAAATTTAAGAGGTCATTAAGTATACCAAATGACCTAGGGCAAAGGCAGCCCCATGCGACCGTTAAAAGTTTTGGGCCTTTGGCACCATCCGACGTCCGTTACATTTACAGCACCAGCAAAACCAGCTGTTTCCGCGCCACAGTCTCAGTTCAACGTCGTTTTTTGACCCCACCCCTAATCACCACCAGCCACGTAACCAACGTCCATGAAATCAAGGAGAAGAAGACAAGTATCGGAGTTGCCGAAGATGGGAAGACGAAGAGAGTGAGGAAGAACATCTACAGAGGAATAAGGCAGAGGCCGTGGGGCAAATGGGCGGCCGAGATTCGCGACCCGCACAAAGGCGTAAGAGTCTGGCTCGGAACCTTCAACACACCCGAGGAAGCTGCTCGGGCCTATGATGAAGCCGCCAGGCGCATCCGCGGCGACAAGGCCAAGCTCAACTTCCCTCCACAACCTGCCCCGGTTCCTGCTTCGGCCCAGCTCCAGCCACCGTCCAAGAAGCGGTGCATGGCTCTCGAGTCGACTGCACCAGCTATGATGGGCATGGAGCCTTACTATCCTTCATTCCAGAATGAGTTCTACTGTAGGAGTGAGACTGCTGCGGATCACCATGAGTGTGAGCTGAAAGAGCAAATCTCGAGCTTGGAGTCTTTCCTAGGCCTGGATGAGTCAGTGTCGTCGAATGAGGTGATGAGTGGACTCGGAATCGGTGAGCCGGACTCAGTGGACCTGTGGATGCTGGATGACCTGGTTACACATCACCAGCAGCAAGGTGAGCATCAGCTCGTGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009753 GO:0009755 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010286 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032870 GO:0035556 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071944 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

270

Amino Acids

30.41

Weight (kDa)

8.96

Isoelectric Point (pI)

55.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	99 - 147	1.2e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16770
fragaria_vesca	FvH4_4g18780
malus_domestica	MD13G1163300.v1.1 MD16G1162800.v1.1 MD16G1162900.v1.1
prunus_persica	Prupe.1G130300_v2.0.a1 Prupe.1G130300_v2.0.a1
pyrus_communis	pycom13g13920 pycom16g13800
rosa_chinensis	RchiOBHm_Chr4g0423581
rosa_laevigata	RLG00000007545
rosa_multiflora	Rmu_sc0000464.1_g000024 Rmu_sc0004342.1_g000003
rosa_roxburghii	Rroxscaffold_5G00365800
rosa_rugosa	Rorug04G0188800
rosa_samantha	Rh4AG248300 Rh4BG253500 Rh4CG261600 Rh4DG248800
rosa_wichuraiana	Rw4G021270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	111
Acc36I	ACCTGC	1 cut(s)	481
AccB1I	GGYRCC	1 cut(s)	97
AccI	GTMKAC	2 cut(s)	37, 539
AccII	CGCG	3 cut(s)	150, 345, 438
AciI	CCGC	8 cut(s)	148, 332, 350, 423, 436, 438, 520, 620
AclWI	GGATC	1 cut(s)	630
AcoI	YGGCCR	1 cut(s)	333
AcsI	RAATTY	1 cut(s)	17
AcyI	GRCGYC	1 cut(s)	108
AfiI	CCNNNNNNNGG	4 cut(s)	264, 356, 519, 679
AgsI	TTSAA	2 cut(s)	167, 385
AjnI	CCWGG	3 cut(s)	425, 678, 765
AjuI	GAANNNNNNNTTGG	2 cut(s)	443, 475
AluBI	AGCT	8 cut(s)	141, 401, 454, 499, 551, 640, 660, 802
AluI	AGCT	8 cut(s)	141, 401, 454, 499, 551, 640, 660, 802
Alw26I	GTCTC	2 cut(s)	163, 605
AlwI	GGATC	1 cut(s)	630
Ama87I	CYCGRG	4 cut(s)	392, 405, 533, 655
AoxI	GGCC	7 cut(s)	89, 314, 333, 408, 447, 492, 676
ApeKI	GCWGC	4 cut(s)	61, 401, 617, 784
ApoI	RAATTY	1 cut(s)	17
Asp700I	GAANNNNTTC	1 cut(s)	593
AspA2I	CCTAGG	2 cut(s)	49, 673
AspLEI	GCGC	2 cut(s)	152, 432
AspS9I	GGNCC	4 cut(s)	89, 408, 493, 745
AsuC2I	CCSGG	1 cut(s)	479
AsuHPI	GGTGA	6 cut(s)	187, 617, 718, 740, 770, 803
AvaI	CYCGRG	4 cut(s)	392, 405, 533, 655
AvaII	GGWCC	1 cut(s)	745
AvrII	CCTAGG	2 cut(s)	49, 673
BanI	GGYRCC	1 cut(s)	97
BarI	GAAGNNNNNNTAC	2 cut(s)	278, 310
BauI	CACGAG	1 cut(s)	803
BbsI	GAAGAC	2 cut(s)	245, 275
BbvI	GCAGC	4 cut(s)	73, 388, 604, 796
BccI	CCATC	3 cut(s)	109, 257, 550
BceAI	ACGGC	1 cut(s)	301
BcgI	CGANNNNNNTGC	6 cut(s)	383, 417, 514, 524, 548, 558
BciT130I	CCWGG	3 cut(s)	427, 680, 767
BcnI	CCSGG	1 cut(s)	479
BcoDI	GTCTC	2 cut(s)	163, 605
BfaI	CTAG	2 cut(s)	50, 674
BfmI	CTRYAG	2 cut(s)	295, 601
BfuAI	ACCTGC	1 cut(s)	481
BisI	GCNGC	7 cut(s)	62, 333, 402, 423, 439, 618, 785
BlnI	CCTAGG	2 cut(s)	49, 673
BlsI	GCNGC	7 cut(s)	63, 334, 403, 424, 440, 619, 786
Bme1390I	CCNGG	4 cut(s)	427, 479, 680, 767
Bme18I	GGWCC	1 cut(s)	745
BmeT110I	CYCGRG	4 cut(s)	392, 405, 533, 655
BmgT120I	GGNCC	4 cut(s)	89, 408, 493, 745
BmiI	GGNNCC	4 cut(s)	99, 379, 483, 567
BmrFI	CCNGG	4 cut(s)	427, 479, 680, 767
BmsI	GCATC	3 cut(s)	441, 744, 805
BpiI	GAAGAC	2 cut(s)	245, 275
BplI	GAGNNNNNCTC	6 cut(s)	357, 389, 638, 670, 722, 754
BpmI	CTGGAG	1 cut(s)	485
BpuMI	CCSGG	1 cut(s)	479
BsaAI	YACGTR	1 cut(s)	208
BsaHI	GRCGYC	1 cut(s)	108
BsaJI	CCNNGG	6 cut(s)	49, 317, 393, 436, 477, 673
Bsc4I	CCNNNNNNNGG	4 cut(s)	264, 356, 519, 679
BseBI	CCWGG	3 cut(s)	427, 680, 767
BseDI	CCNNGG	6 cut(s)	49, 317, 393, 436, 477, 673
BseGI	GGATG	5 cut(s)	101, 432, 688, 759, 766
BseLI	CCNNNNNNNGG	4 cut(s)	264, 356, 519, 679
BseMII	CTCAG	2 cut(s)	174, 753
BseX3I	CGGCCG	1 cut(s)	333
BseXI	GCAGC	4 cut(s)	73, 388, 604, 796
BseYI	CCCAGC	1 cut(s)	495
BsgI	GTGCAG	1 cut(s)	528
Bsh1236I	CGCG	3 cut(s)	150, 345, 438
Bsh1285I	CGRYCG	2 cut(s)	75, 336
BshFI	GGCC	7 cut(s)	91, 316, 335, 410, 449, 494, 678
BshNI	GGYRCC	1 cut(s)	97
BsiEI	CGRYCG	2 cut(s)	75, 336
BsiHKCI	CYCGRG	4 cut(s)	392, 405, 533, 655
BsiSI	CCGG	2 cut(s)	479, 734
BslI	CCNNNNNNNGG	4 cut(s)	264, 356, 519, 679
BsmAI	GTCTC	2 cut(s)	163, 605
BsnI	GGCC	7 cut(s)	91, 316, 335, 410, 449, 494, 678
BsoBI	CYCGRG	4 cut(s)	392, 405, 533, 655
Bsp143I	GATC	1 cut(s)	622
Bsp68I	TCGCGA	1 cut(s)	345
BspACI	CCGC	8 cut(s)	148, 332, 350, 423, 436, 438, 520, 620
BspANI	GGCC	7 cut(s)	91, 316, 335, 410, 449, 494, 678
BspCNI	CTCAG	2 cut(s)	173, 752
BspFNI	CGCG	3 cut(s)	150, 345, 438
BspLI	GGNNCC	4 cut(s)	99, 379, 483, 567
BspMI	ACCTGC	1 cut(s)	481
BspPI	GGATC	1 cut(s)	630
BspT107I	GGYRCC	1 cut(s)	97
BssECI	CCNNGG	6 cut(s)	49, 317, 393, 436, 477, 673
BssMI	GATC	1 cut(s)	622
BssNAI	GTATAC	1 cut(s)	38
BssNI	GRCGYC	1 cut(s)	108
BssSI	CACGAG	1 cut(s)	803
BssT1I	CCWWGG	2 cut(s)	49, 673
Bst1107I	GTATAC	1 cut(s)	38
Bst2BI	CACGAG	1 cut(s)	803
Bst2UI	CCWGG	3 cut(s)	427, 680, 767
Bst4CI	ACNGT	4 cut(s)	76, 157, 510, 602
Bst6I	CTCTTC	1 cut(s)	269
BstACI	GRCGYC	1 cut(s)	108
BstBAI	YACGTR	1 cut(s)	208
BstDEI	CTNAG	2 cut(s)	160, 739
BstDSI	CCRYGG	2 cut(s)	317, 436
BstF5I	GGATG	5 cut(s)	101, 432, 688, 759, 766
BstFNI	CGCG	3 cut(s)	150, 345, 438
BstHHI	GCGC	2 cut(s)	152, 432
BstKTI	GATC	1 cut(s)	625
BstMAI	GTCTC	2 cut(s)	163, 605
BstMBI	GATC	1 cut(s)	622
BstMCI	CGRYCG	2 cut(s)	75, 336
BstMWI	GCNNNNNNNGC	7 cut(s)	61, 138, 147, 407, 438, 646, 793
BstNI	CCWGG	3 cut(s)	427, 680, 767
BstSCI	CCNGG	4 cut(s)	425, 477, 678, 765
BstSFI	CTRYAG	2 cut(s)	295, 601
BstUI	CGCG	3 cut(s)	150, 345, 438
BstV1I	GCAGC	4 cut(s)	73, 388, 604, 796
BstV2I	GAAGAC	2 cut(s)	245, 275
BstZ17I	GTATAC	1 cut(s)	38
BstZI	CGGCCG	1 cut(s)	333
BsuRI	GGCC	7 cut(s)	91, 316, 335, 410, 449, 494, 678
BtgI	CCRYGG	2 cut(s)	317, 436
BtsCI	GGATG	5 cut(s)	101, 432, 688, 759, 766
BtsIMutI	CAGTG	2 cut(s)	696, 747
BtuMI	TCGCGA	1 cut(s)	345
BveI	ACCTGC	1 cut(s)	481
CfoI	GCGC	2 cut(s)	152, 432
Cfr13I	GGNCC	4 cut(s)	89, 408, 493, 745
Cfr42I	CCGCGG	1 cut(s)	439
CsiI	ACCWGGT	1 cut(s)	765
CviAII	CATG	5 cut(s)	68, 221, 526, 562, 629
DdeI	CTNAG	2 cut(s)	160, 739
DpnI	GATC	1 cut(s)	624
DpnII	GATC	1 cut(s)	622
EaeI	YGGCCR	1 cut(s)	333
EagI	CGGCCG	1 cut(s)	333
Eam1104I	CTCTTC	1 cut(s)	269
EarI	CTCTTC	1 cut(s)	269
EclXI	CGGCCG	1 cut(s)	333
Eco130I	CCWWGG	2 cut(s)	49, 673
Eco147I	AGGCCT	1 cut(s)	678
Eco47I	GGWCC	1 cut(s)	745
Eco52I	CGGCCG	1 cut(s)	333
Eco88I	CYCGRG	4 cut(s)	392, 405, 533, 655
EcoRII	CCWGG	3 cut(s)	425, 678, 765
EcoT14I	CCWWGG	2 cut(s)	49, 673
ErhI	CCWWGG	2 cut(s)	49, 673
FaeI	CATG	5 cut(s)	71, 224, 529, 565, 632
FaiI	YATR	8 cut(s)	38, 69, 222, 414, 527, 554, 563, 630
FalI	AAGNNNNNCTT	2 cut(s)	443, 475
FatI	CATG	5 cut(s)	67, 220, 525, 561, 628
FauI	CCCGC	1 cut(s)	357
FblI	GTMKAC	2 cut(s)	37, 539
Fnu4HI	GCNGC	7 cut(s)	62, 333, 402, 423, 439, 618, 785
FokI	GGATG	5 cut(s)	88, 419, 695, 766, 773
Fsp4HI	GCNGC	7 cut(s)	62, 333, 402, 423, 439, 618, 785
FspBI	CTAG	2 cut(s)	50, 674
GlaI	GCGC	2 cut(s)	151, 431
GluI	GCNGC	7 cut(s)	62, 333, 402, 423, 439, 618, 785
GsaI	CCCAGC	1 cut(s)	499
GsuI	CTGGAG	1 cut(s)	485
HaeIII	GGCC	7 cut(s)	91, 316, 335, 410, 449, 494, 678
HapII	CCGG	2 cut(s)	479, 734
HhaI	GCGC	2 cut(s)	152, 432
Hin1I	GRCGYC	1 cut(s)	108
Hin1II	CATG	5 cut(s)	71, 224, 529, 565, 632
Hin6I	GCGC	2 cut(s)	150, 430
HinP1I	GCGC	2 cut(s)	150, 430
HincII	GTYRAC	1 cut(s)	540
HindII	GTYRAC	1 cut(s)	540
HinfI	GANTC	8 cut(s)	340, 366, 536, 665, 686, 717, 723, 737
HpaII	CCGG	2 cut(s)	479, 734
HphI	GGTGA	6 cut(s)	187, 617, 718, 740, 770, 803
Hpy166II	GTNNAC	4 cut(s)	38, 540, 716, 745
Hpy188I	TCNGA	4 cut(s)	106, 251, 377, 722
Hpy188III	TCNNGA	4 cut(s)	344, 533, 586, 655
Hpy8I	GTNNAC	4 cut(s)	38, 540, 716, 745
Hpy99I	CGWCG	3 cut(s)	110, 174, 700
HpyAV	CCTTC	2 cut(s)	391, 588
HpyCH4III	ACNGT	4 cut(s)	76, 157, 510, 602
HpyCH4IV	ACGT	4 cut(s)	108, 169, 207, 216
HpyCH4V	TGCA	4 cut(s)	4, 14, 525, 545
HpyF10VI	GCNNNNNNNGC	7 cut(s)	61, 138, 147, 407, 438, 646, 793
HpyF3I	CTNAG	2 cut(s)	160, 739
HpySE526I	ACGT	4 cut(s)	108, 169, 207, 216
Hsp92I	GRCGYC	1 cut(s)	108
Hsp92II	CATG	5 cut(s)	71, 224, 529, 565, 632
HspAI	GCGC	2 cut(s)	150, 430
KspI	CCGCGG	1 cut(s)	439
Kzo9I	GATC	1 cut(s)	622
LmnI	GCTCC	2 cut(s)	504, 565
Lsp1109I	GCAGC	4 cut(s)	73, 388, 604, 796
LweI	GCATC	3 cut(s)	441, 744, 805
MabI	ACCWGGT	1 cut(s)	765
MaeI	CTAG	2 cut(s)	50, 674
MaeII	ACGT	4 cut(s)	108, 169, 207, 216
MaeIII	GTNAC	3 cut(s)	113, 208, 769
MalI	GATC	1 cut(s)	624
MboI	GATC	1 cut(s)	622
MboII	GAAGA	6 cut(s)	247, 250, 272, 280, 286, 298
MluCI	AATT	1 cut(s)	17
MlyI	GAGTC	6 cut(s)	375, 545, 674, 695, 711, 731
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	7 cut(s)	18, 276, 293, 306, 388, 474, 697
MroXI	GAANNNNTTC	1 cut(s)	593
MseI	TTAA	3 cut(s)	21, 32, 78
MslI	CAYNNNNRTG	1 cut(s)	633
MspA1I	CMGCKG	2 cut(s)	141, 438
MspI	CCGG	2 cut(s)	479, 734
MspR9I	CCNGG	4 cut(s)	427, 479, 680, 767
MvaI	CCWGG	3 cut(s)	427, 680, 767
MvnI	CGCG	3 cut(s)	150, 345, 438
MwoI	GCNNNNNNNGC	7 cut(s)	61, 138, 147, 407, 438, 646, 793
NciI	CCSGG	1 cut(s)	479
NdeII	GATC	1 cut(s)	622
NlaIII	CATG	5 cut(s)	71, 224, 529, 565, 632
NlaIV	GGNNCC	4 cut(s)	99, 379, 483, 567
NmeAIII	GCCGAG	1 cut(s)	361
NruI	TCGCGA	1 cut(s)	345
PaeR7I	CTCGAG	2 cut(s)	533, 655
PceI	AGGCCT	1 cut(s)	678
PcsI	WCGNNNNNNNCGW	2 cut(s)	213, 255
PdmI	GAANNNNTTC	1 cut(s)	593
PfeI	GAWTC	2 cut(s)	340, 723
PkrI	GCNGC	7 cut(s)	63, 334, 403, 424, 440, 619, 786
PleI	GAGTC	6 cut(s)	374, 544, 673, 694, 711, 731
PpsI	GAGTC	6 cut(s)	374, 544, 673, 694, 711, 731
Ppu21I	YACGTR	1 cut(s)	208
Psp6I	CCWGG	3 cut(s)	425, 678, 765
PspFI	CCCAGC	1 cut(s)	495
PspGI	CCWGG	3 cut(s)	425, 678, 765
PspN4I	GGNNCC	4 cut(s)	99, 379, 483, 567
PspPI	GGNCC	4 cut(s)	89, 408, 493, 745
PvuII	CAGCTG	1 cut(s)	141
RruI	TCGCGA	1 cut(s)	345
RseI	CAYNNNNRTG	1 cut(s)	633
SacII	CCGCGG	1 cut(s)	439
SalI	GTCGAC	1 cut(s)	538
SaqAI	TTAA	3 cut(s)	21, 32, 78
SatI	GCNGC	7 cut(s)	62, 333, 402, 423, 439, 618, 785
Sau3AI	GATC	1 cut(s)	622
Sau96I	GGNCC	4 cut(s)	89, 408, 493, 745
SchI	GAGTC	6 cut(s)	375, 545, 674, 695, 711, 731
ScrFI	CCNGG	4 cut(s)	427, 479, 680, 767
SexAI	ACCWGGT	1 cut(s)	765
SfaNI	GCATC	3 cut(s)	441, 744, 805
SfcI	CTRYAG	2 cut(s)	295, 601
Sfr274I	CTCGAG	2 cut(s)	533, 655
Sfr303I	CCGCGG	1 cut(s)	439
SgrBI	CCGCGG	1 cut(s)	439
SinI	GGWCC	1 cut(s)	745
SlaI	CTCGAG	2 cut(s)	533, 655
SmiMI	CAYNNNNRTG	1 cut(s)	633
SmlI	CTYRAG	2 cut(s)	533, 655
SmoI	CTYRAG	2 cut(s)	533, 655
Sse9I	AATT	1 cut(s)	17
SseBI	AGGCCT	1 cut(s)	678
SsiI	CCGC	8 cut(s)	148, 332, 350, 423, 436, 438, 520, 620
SspMI	CTAG	2 cut(s)	50, 674
StuI	AGGCCT	1 cut(s)	678
StyD4I	CCNGG	4 cut(s)	425, 477, 678, 765
StyI	CCWWGG	2 cut(s)	49, 673
TaaI	ACNGT	4 cut(s)	76, 157, 510, 602
TaiI	ACGT	4 cut(s)	111, 172, 210, 219
TaqI	TCGA	4 cut(s)	534, 539, 656, 698
TasI	AATT	1 cut(s)	17
TauI	GCSGC	3 cut(s)	335, 425, 441
TfiI	GAWTC	2 cut(s)	340, 723
Tru1I	TTAA	3 cut(s)	21, 32, 78
Tru9I	TTAA	3 cut(s)	21, 32, 78
TscAI	CASTG	2 cut(s)	696, 747
TseI	GCWGC	4 cut(s)	61, 401, 617, 784
TspDTI	ATGAA	3 cut(s)	237, 432, 570
TspGWI	ACGGA	1 cut(s)	101
TspRI	CASTG	2 cut(s)	696, 747
VpaK11BI	GGWCC	1 cut(s)	745
XapI	RAATTY	1 cut(s)	17
XhoI	CTCGAG	2 cut(s)	533, 655
XmaJI	CCTAGG	2 cut(s)	49, 673
XmiI	GTMKAC	2 cut(s)	37, 539
XmnI	GAANNNNTTC	1 cut(s)	593
XspI	CTAG	2 cut(s)	50, 674
ZraI	GACGTC	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.