Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0011185

Physical Location & Seq

Genomic Coordinates Reverse (-)

9860997 .. 9862824

Gene Structure 1828 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g13800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGGCCGTGTCCTGAGAAAAGAAGGCCCACTAAGACAACTTATTGTGTTTTTTGTCGTTATGCAAAAATGTTGGTTGCAACCGACAGTCGTCTATAAATACAGAGCTCTAGAGGAGAAGCTTCTCGCATTGTGCGTGTGTCATGAGAAAGCACTTTTTTCTCTCAAAGTTTCTACAAGAGGCAACCTAAACATGTGTGGTGGTGCTATCATTTCCGACTTCATCGCCTCCAAGCGTGGCCGGAAGCTGACGGCGGAGGACCTCTGGTCGGAGCTTGACACCATCTCTGACCTCCTCGGCATAGACCACTCCAACAGCATCAACAAACAGCCTGAGGATTACAAGGTGGTCCAGAAGCCCAAAGCATCTTTCACCAAAGTAGCGACAAGTGATGAGAAGCCCAAGAAGGCGACCGAGGCAGCTGCCGCTGCTGCTGCCGAAGGCAAGAGAGTGAGGAAAAATGTGTACAGAGGAATAAGGCAGAGGCCGTGGGGCAAATGGGCGGCTGAGATTCGCGACCCCCGCAAAGGCGTCCGAGTCTGGCTCGGCACCTACAACACCGCCGAGGAAGCCGCCCGCGCCTACGACGAAGCCGCCGTGCGCATCCGCGGGGACAAGGCCAAGCTCAACTTTGCACAACCACCACCCTCTTCACTGCCTCCGCCTCTGGCTCCGGCTACGCCGCCGCCAACAAAGAAGCGGTGCATTGTGGCTGAATCAACTCGGGTGAAGTCTACTCAGCCGAGTTTCCAGACCGGTTCTTACCATTATGATCCATTTTATCAGGGTGGCGGTGATATGTATGCTAAGAATGAGGTGGCGGGTGGTGACGGAGGGTATGAGCTGAAGGAGCAAATATCGAGCTTGGAGTCGTTCTTGGGGCTGGATGAGGTGGTGGCGGAGCAGCCGAGTCAGGTGGCGAGTGGAAGCGGTGAATCGGACTCGTTGGACCTGTGGATGCTGGATGACCTGCTGACACACCAGCAACAGCTGCGGGGGCAGTCTCTGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009753 GO:0009755 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010286 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032870 GO:0035556 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071944 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

338

Amino Acids

37.34

Weight (kDa)

9.09

Isoelectric Point (pI)

41.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	155 - 204	2.9e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0011185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16770
fragaria_vesca	FvH4_4g18780
malus_domestica	MD13G1163300.v1.1 MD16G1162800.v1.1 MD16G1162900.v1.1
prunus_persica	Prupe.1G130300_v2.0.a1 Prupe.1G130300_v2.0.a1
pyrus_communis	pycom13g13920 pycom16g13800
rosa_chinensis	RchiOBHm_Chr4g0423581
rosa_laevigata	RLG00000007545
rosa_multiflora	Rmu_sc0000464.1_g000024 Rmu_sc0004342.1_g000003
rosa_roxburghii	Rroxscaffold_5G00365800
rosa_rugosa	Rorug04G0188800
rosa_samantha	Rh4AG248300 Rh4BG253500 Rh4CG261600 Rh4DG248800
rosa_wichuraiana	Rw4G021270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	602
Acc36I	ACCTGC	1 cut(s)	978
AccB1I	GGYRCC	1 cut(s)	548
AccI	GTMKAC	1 cut(s)	734
AccII	CGCG	3 cut(s)	516, 579, 609
AclWI	GGATC	1 cut(s)	767
AcoI	YGGCCR	1 cut(s)	238
AcuI	CTGAAG	1 cut(s)	866
AcyI	GRCGYC	1 cut(s)	531
AfaI	GTAC	1 cut(s)	467
AfiI	CCNNNNNNNGG	2 cut(s)	268, 527
AflIII	ACRYGT	1 cut(s)	192
AgeI	ACCGGT	1 cut(s)	755
AhdI	GACNNNNNGTC	1 cut(s)	265
AjuI	GAANNNNNNNTTGG	2 cut(s)	353, 385
AluBI	AGCT	9 cut(s)	107, 121, 247, 274, 422, 625, 844, 864, 991
AluI	AGCT	9 cut(s)	107, 121, 247, 274, 422, 625, 844, 864, 991
Alw21I	GWGCWC	1 cut(s)	109
Alw26I	GTCTC	1 cut(s)	1008
AlwI	GGATC	1 cut(s)	767
AlwNI	CAGNNNCTG	1 cut(s)	1006
Ama87I	CYCGRG	1 cut(s)	723
AoxI	GGCC	5 cut(s)	4, 25, 238, 485, 618
ApeKI	GCWGC	7 cut(s)	419, 422, 428, 431, 434, 904, 991
AsiGI	ACCGGT	1 cut(s)	755
AspLEI	GCGC	2 cut(s)	581, 603
AspS9I	GGNCC	5 cut(s)	4, 26, 259, 349, 949
AsuHPI	GGTGA	5 cut(s)	364, 739, 806, 839, 944
AvaI	CYCGRG	1 cut(s)	723
AvaII	GGWCC	3 cut(s)	259, 349, 949
AxyI	CCTNAGG	1 cut(s)	333
BanI	GGYRCC	1 cut(s)	548
BanII	GRGCYC	1 cut(s)	109
Bbv12I	GWGCWC	1 cut(s)	109
BbvI	GCAGC	7 cut(s)	409, 415, 418, 421, 431, 916, 978
BccI	CCATC	1 cut(s)	290
BceAI	ACGGC	3 cut(s)	267, 472, 581
BcgI	CGANNNNNNTGC	2 cut(s)	404, 438
BcoDI	GTCTC	1 cut(s)	1008
BfaI	CTAG	1 cut(s)	110
BfuAI	ACCTGC	1 cut(s)	978
Bme18I	GGWCC	3 cut(s)	259, 349, 949
BmeRI	GACNNNNNGTC	1 cut(s)	265
BmeT110I	CYCGRG	1 cut(s)	723
BmgT120I	GGNCC	5 cut(s)	4, 26, 259, 349, 949
BmiI	GGNNCC	2 cut(s)	550, 672
BmsI	GCATC	4 cut(s)	327, 374, 612, 948
BoxI	GACNNNNGTC	1 cut(s)	89
BplI	GAGNNNNNCTC	2 cut(s)	528, 560
BsaHI	GRCGYC	1 cut(s)	531
BsaJI	CCNNGG	5 cut(s)	295, 414, 488, 564, 607
BsaWI	WCCGGW	1 cut(s)	755
Bsc4I	CCNNNNNNNGG	2 cut(s)	268, 527
Bse118I	RCCGGY	1 cut(s)	755
Bse21I	CCTNAGG	1 cut(s)	333
BseDI	CCNNGG	5 cut(s)	295, 414, 488, 564, 607
BseGI	GGATG	4 cut(s)	603, 892, 963, 970
BseLI	CCNNNNNNNGG	2 cut(s)	268, 527
BseMII	CTCAG	4 cut(s)	5, 324, 498, 752
BseRI	GAGGAG	2 cut(s)	128, 284
BseXI	GCAGC	7 cut(s)	409, 415, 418, 421, 431, 916, 978
Bsh1236I	CGCG	3 cut(s)	516, 579, 609
Bsh1285I	CGRYCG	1 cut(s)	414
BshFI	GGCC	5 cut(s)	6, 27, 240, 487, 620
BshNI	GGYRCC	1 cut(s)	548
BshTI	ACCGGT	1 cut(s)	755
BsiEI	CGRYCG	1 cut(s)	414
BsiHKAI	GWGCWC	1 cut(s)	109
BsiHKCI	CYCGRG	1 cut(s)	723
BsiSI	CCGG	3 cut(s)	241, 674, 756
BslFI	GGGAC	1 cut(s)	626
BslI	CCNNNNNNNGG	2 cut(s)	268, 527
BsmAI	GTCTC	1 cut(s)	1008
BsmFI	GGGAC	1 cut(s)	626
BsnI	GGCC	5 cut(s)	6, 27, 240, 487, 620
BsoBI	CYCGRG	1 cut(s)	723
Bsp1286I	GDGCHC	1 cut(s)	109
Bsp1407I	TGTACA	1 cut(s)	465
Bsp143I	GATC	1 cut(s)	772
Bsp68I	TCGCGA	1 cut(s)	516
BspANI	GGCC	5 cut(s)	6, 27, 240, 487, 620
BspCNI	CTCAG	4 cut(s)	6, 325, 499, 751
BspFNI	CGCG	3 cut(s)	516, 579, 609
BspHI	TCATGA	1 cut(s)	142
BspLI	GGNNCC	2 cut(s)	550, 672
BspMI	ACCTGC	1 cut(s)	978
BspPI	GGATC	1 cut(s)	767
BspT107I	GGYRCC	1 cut(s)	548
BsrFI	RCCGGY	1 cut(s)	755
BsrGI	TGTACA	1 cut(s)	465
BssAI	RCCGGY	1 cut(s)	755
BssECI	CCNNGG	5 cut(s)	295, 414, 488, 564, 607
BssMI	GATC	1 cut(s)	772
BssNI	GRCGYC	1 cut(s)	531
Bst4CI	ACNGT	1 cut(s)	88
Bst6I	CTCTTC	1 cut(s)	655
BstACI	GRCGYC	1 cut(s)	531
BstAPI	GCANNNNNTGC	1 cut(s)	991
BstAUI	TGTACA	1 cut(s)	465
BstC8I	GCNNGC	1 cut(s)	577
BstDEI	CTNAG	6 cut(s)	14, 32, 333, 507, 738, 807
BstDSI	CCRYGG	2 cut(s)	488, 607
BstF5I	GGATG	4 cut(s)	603, 892, 963, 970
BstFNI	CGCG	3 cut(s)	516, 579, 609
BstHHI	GCGC	2 cut(s)	581, 603
BstKTI	GATC	1 cut(s)	775
BstMAI	GTCTC	1 cut(s)	1008
BstMBI	GATC	1 cut(s)	772
BstMCI	CGRYCG	1 cut(s)	414
BstNSI	RCATGY	1 cut(s)	196
BstPAI	GACNNNNGTC	1 cut(s)	89
BstUI	CGCG	3 cut(s)	516, 579, 609
BstV1I	GCAGC	7 cut(s)	409, 415, 418, 421, 431, 916, 978
Bsu36I	CCTNAGG	1 cut(s)	333
BsuRI	GGCC	5 cut(s)	6, 27, 240, 487, 620
BtgI	CCRYGG	2 cut(s)	488, 607
BtgZI	GCGATG	1 cut(s)	208
BtsCI	GGATG	4 cut(s)	603, 892, 963, 970
BtsI	GCAGTG	1 cut(s)	653
BtsIMutI	CAGTG	1 cut(s)	653
BtuMI	TCGCGA	1 cut(s)	516
BveI	ACCTGC	1 cut(s)	978
Cac8I	GCNNGC	1 cut(s)	577
CaiI	CAGNNNCTG	1 cut(s)	1006
CciI	TCATGA	1 cut(s)	142
CfoI	GCGC	2 cut(s)	581, 603
Cfr10I	RCCGGY	1 cut(s)	755
Cfr13I	GGNCC	5 cut(s)	4, 26, 259, 349, 949
Cfr42I	CCGCGG	1 cut(s)	610
CseI	GACGC	1 cut(s)	520
Csp6I	GTAC	1 cut(s)	466
CspAI	ACCGGT	1 cut(s)	755
CviAII	CATG	2 cut(s)	143, 193
CviQI	GTAC	1 cut(s)	466
DdeI	CTNAG	6 cut(s)	14, 32, 333, 507, 738, 807
DpnI	GATC	1 cut(s)	774
DpnII	GATC	1 cut(s)	772
DriI	GACNNNNNGTC	1 cut(s)	265
EaeI	YGGCCR	1 cut(s)	238
Eam1104I	CTCTTC	1 cut(s)	655
Eam1105I	GACNNNNNGTC	1 cut(s)	265
EarI	CTCTTC	1 cut(s)	655
EciI	GGCGGA	3 cut(s)	269, 651, 914
Ecl136II	GAGCTC	1 cut(s)	107
Eco24I	GRGCYC	1 cut(s)	109
Eco47I	GGWCC	3 cut(s)	259, 349, 949
Eco53kI	GAGCTC	1 cut(s)	107
Eco57I	CTGAAG	1 cut(s)	866
Eco81I	CCTNAGG	1 cut(s)	333
Eco88I	CYCGRG	1 cut(s)	723
EcoICRI	GAGCTC	1 cut(s)	107
EcoO109I	RGGNCCY	1 cut(s)	259
EcoT38I	GRGCYC	1 cut(s)	109
FaeI	CATG	2 cut(s)	146, 196
FaiI	YATR	9 cut(s)	62, 96, 144, 194, 302, 771, 800, 804, 840
FalI	AAGNNNNNCTT	2 cut(s)	614, 646
FaqI	GGGAC	1 cut(s)	626
FatI	CATG	2 cut(s)	142, 192
FauI	CCCGC	5 cut(s)	530, 584, 602, 814, 987
FblI	GTMKAC	1 cut(s)	734
FokI	GGATG	4 cut(s)	590, 899, 970, 977
FriOI	GRGCYC	1 cut(s)	109
FspAI	RTGCGCAY	1 cut(s)	602
FspBI	CTAG	1 cut(s)	110
FspI	TGCGCA	1 cut(s)	602
GlaI	GCGC	2 cut(s)	580, 602
HaeIII	GGCC	5 cut(s)	6, 27, 240, 487, 620
HapII	CCGG	3 cut(s)	241, 674, 756
HgaI	GACGC	1 cut(s)	520
HhaI	GCGC	2 cut(s)	581, 603
Hin1I	GRCGYC	1 cut(s)	531
Hin1II	CATG	2 cut(s)	146, 196
Hin6I	GCGC	2 cut(s)	579, 601
HinP1I	GCGC	2 cut(s)	579, 601
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	7 cut(s)	511, 537, 716, 869, 910, 935, 941
HpaII	CCGG	3 cut(s)	241, 674, 756
HphI	GGTGA	5 cut(s)	364, 739, 806, 839, 944
Hpy166II	GTNNAC	2 cut(s)	466, 735
Hpy188I	TCNGA	5 cut(s)	217, 271, 289, 536, 940
Hpy188III	TCNNGA	6 cut(s)	13, 110, 143, 352, 515, 751
Hpy8I	GTNNAC	2 cut(s)	466, 735
Hpy99I	CGWCG	1 cut(s)	590
HpyAV	CCTTC	4 cut(s)	17, 400, 434, 841
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4V	TGCA	4 cut(s)	64, 79, 635, 705
HpyF3I	CTNAG	6 cut(s)	14, 32, 333, 507, 738, 807
Hsp92I	GRCGYC	1 cut(s)	531
Hsp92II	CATG	2 cut(s)	146, 196
HspAI	GCGC	2 cut(s)	579, 601
KspI	CCGCGG	1 cut(s)	610
Kzo9I	GATC	1 cut(s)	772
LmnI	GCTCC	4 cut(s)	271, 676, 850, 901
Lsp1109I	GCAGC	7 cut(s)	409, 415, 418, 421, 431, 916, 978
LweI	GCATC	4 cut(s)	327, 374, 612, 948
MaeI	CTAG	1 cut(s)	110
MaeIII	GTNAC	1 cut(s)	827
MalI	GATC	1 cut(s)	774
MboI	GATC	1 cut(s)	772
MboII	GAAGA	1 cut(s)	642
MhlI	GDGCHC	1 cut(s)	109
MlyI	GAGTC	4 cut(s)	546, 878, 919, 935
MmeI	TCCRAC	4 cut(s)	240, 249, 336, 927
MseI	TTAA	1 cut(s)	1012
MspA1I	CMGCKG	4 cut(s)	422, 428, 609, 991
MspI	CCGG	3 cut(s)	241, 674, 756
MvnI	CGCG	3 cut(s)	516, 579, 609
NdeII	GATC	1 cut(s)	772
NlaIII	CATG	2 cut(s)	146, 196
NlaIV	GGNNCC	2 cut(s)	550, 672
NmeAIII	GCCGAG	5 cut(s)	276, 525, 589, 768, 933
NmuCI	GTSAC	1 cut(s)	827
NruI	TCGCGA	1 cut(s)	516
NsbI	TGCGCA	1 cut(s)	602
NspI	RCATGY	1 cut(s)	196
PagI	TCATGA	1 cut(s)	142
PciI	ACATGT	1 cut(s)	192
PcsI	WCGNNNNNNNCGW	2 cut(s)	132, 594
PfeI	GAWTC	3 cut(s)	511, 716, 935
PinAI	ACCGGT	1 cut(s)	755
PleI	GAGTC	4 cut(s)	545, 877, 918, 935
PpsI	GAGTC	4 cut(s)	545, 877, 918, 935
PpuMI	RGGWCCY	1 cut(s)	259
PscI	ACATGT	1 cut(s)	192
PshAI	GACNNNNGTC	1 cut(s)	89
Psp124BI	GAGCTC	1 cut(s)	109
Psp5II	RGGWCCY	1 cut(s)	259
PspN4I	GGNNCC	2 cut(s)	550, 672
PspPI	GGNCC	5 cut(s)	4, 26, 259, 349, 949
PspPPI	RGGWCCY	1 cut(s)	259
PstNI	CAGNNNCTG	1 cut(s)	1006
PvuII	CAGCTG	2 cut(s)	422, 991
RruI	TCGCGA	1 cut(s)	516
RsaI	GTAC	1 cut(s)	467
RsaNI	GTAC	1 cut(s)	466
SacI	GAGCTC	1 cut(s)	109
SacII	CCGCGG	1 cut(s)	610
SaqAI	TTAA	1 cut(s)	1012
Sau3AI	GATC	1 cut(s)	772
Sau96I	GGNCC	5 cut(s)	4, 26, 259, 349, 949
SchI	GAGTC	4 cut(s)	546, 878, 919, 935
SduI	GDGCHC	1 cut(s)	109
SfaNI	GCATC	4 cut(s)	327, 374, 612, 948
Sfr303I	CCGCGG	1 cut(s)	610
SgrBI	CCGCGG	1 cut(s)	610
SinI	GGWCC	3 cut(s)	259, 349, 949
SspMI	CTAG	1 cut(s)	110
SstI	GAGCTC	1 cut(s)	109
TaaI	ACNGT	1 cut(s)	88
TaqI	TCGA	1 cut(s)	860
TaqII	GACCGA	1 cut(s)	428
TatI	WGTACW	1 cut(s)	465
TauI	GCSGC	6 cut(s)	428, 506, 575, 596, 685, 688
TfiI	GAWTC	3 cut(s)	511, 716, 935
Tru1I	TTAA	1 cut(s)	1012
Tru9I	TTAA	1 cut(s)	1012
TscAI	CASTG	1 cut(s)	660
TseFI	GTSAC	1 cut(s)	827
TseI	GCWGC	7 cut(s)	419, 422, 428, 431, 434, 904, 991
Tsp45I	GTSAC	1 cut(s)	827
TspDTI	ATGAA	1 cut(s)	211
TspGWI	ACGGA	1 cut(s)	846
TspRI	CASTG	1 cut(s)	660
VpaK11BI	GGWCC	3 cut(s)	259, 349, 949
XbaI	TCTAGA	1 cut(s)	109
XceI	RCATGY	1 cut(s)	196
XmiI	GTMKAC	1 cut(s)	734
XspI	CTAG	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.