Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0011185

Physical Location & Seq

Genomic Coordinates Reverse (-)

9903777 .. 9905523

Gene Structure 1747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g13920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGTGTGGTGGTGCTATCATTTCCGACTTCATCGCCGCCAAGCGCGGCCGGAAGCTGACGGTGCAGGACCTCTGGTCAGATCTTGACACCATCTCTGACCTCCTCGGCATAGACTACTCCAACAGCATCAACAAACAGCCAGAGAATCACAAGGTGGTCCAAAAGCCCAAACCATCTATCACCAAAGTAGTGACAAGTGATGAGAAACCCAAGAAGGCGAGCGGGTCTGCTGCTGCCGCAGAAGGCAAGAGAGTGAGGAAAAACGTGTACAGAGGAATAAGGCAGAGGCCGTGGGGCAAATGGGCGGCTGAGATTCGCGACCCCCACAAAGGCGTCCGGGTCTGGCTCGGCACCTATGGCACCGCTGAGGAAGCCGCCCGCGCTTACGATGAAGCCGCCGTGCGCATCCGCGGGGACAAGGCCAAGCTCAACTTTGCCCAACCACCACCCTCTTCACCGCTTCCATCTCTGGCTCCGGATACGCCGCCGCCGACGAAGAGGCGGTGCATTGTTGCTGAGTCAACTCTGGTGGAGCCGACTCAACCGAGTTTCCAGACCGGTTCTTACTATTATGATCCATTATATCACGGCGGTGGTGGTGGGGAGATGTATGCTAAGAATGAGGTGGCGGGTGGGGACGGCAGGTATGAGCTGAAGGAGCAGATATGGAGCTTGGAGTCGTTCTTGGGGCTGGACGAGGTGGTGGTAGAGCAGCCGAGTCAGGTGGTGAGTGGAAGCGGTGAGTCGGACTCGTTGGACCTGTGGATGCTGGATGACCTGGTGGCATATCGGCAACAAGGGCAGCTTCTGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009753 GO:0009755 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010286 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032870 GO:0035556 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071944 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

272

Amino Acids

29.8

Weight (kDa)

6.85

Isoelectric Point (pI)

40.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	89 - 138	6.1e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16770
fragaria_vesca	FvH4_4g18780
malus_domestica	MD13G1163300.v1.1 MD16G1162800.v1.1 MD16G1162900.v1.1
prunus_persica	Prupe.1G130300_v2.0.a1 Prupe.1G130300_v2.0.a1
pyrus_communis	pycom13g13920 pycom16g13800
rosa_chinensis	RchiOBHm_Chr4g0423581
rosa_laevigata	RLG00000007545
rosa_multiflora	Rmu_sc0000464.1_g000024 Rmu_sc0004342.1_g000003
rosa_roxburghii	Rroxscaffold_5G00365800
rosa_rugosa	Rorug04G0188800
rosa_samantha	Rh4AG248300 Rh4BG253500 Rh4CG261600 Rh4DG248800
rosa_wichuraiana	Rw4G021270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	404
Acc36I	ACCTGC	1 cut(s)	633
AccB1I	GGYRCC	2 cut(s)	350, 359
AccBSI	CCGCTC	1 cut(s)	222
AccII	CGCG	4 cut(s)	45, 318, 381, 411
AccIII	TCCGGA	1 cut(s)	475
AclWI	GGATC	1 cut(s)	569
AcoI	YGGCCR	1 cut(s)	46
AcuI	CTGAAG	1 cut(s)	674
AcyI	GRCGYC	1 cut(s)	333
AdeI	CACNNNGTG	1 cut(s)	154
AfaI	GTAC	1 cut(s)	269
AfiI	CCNNNNNNNGG	1 cut(s)	329
AflIII	ACRYGT	1 cut(s)	264
AgeI	ACCGGT	1 cut(s)	557
AhdI	GACNNNNNGTC	1 cut(s)	73
AjnI	CCWGG	1 cut(s)	777
AleI	CACNNNNGTG	1 cut(s)	591
AluBI	AGCT	5 cut(s)	55, 427, 652, 672, 805
AluI	AGCT	5 cut(s)	55, 427, 652, 672, 805
AlwI	GGATC	1 cut(s)	569
AlwNI	CAGNNNCTG	1 cut(s)	808
Aor13HI	TCCGGA	1 cut(s)	475
AoxI	GGCC	3 cut(s)	46, 287, 420
ApeKI	GCWGC	4 cut(s)	230, 233, 712, 802
AsiGI	ACCGGT	1 cut(s)	557
AspLEI	GCGC	3 cut(s)	45, 383, 405
AspS9I	GGNCC	3 cut(s)	67, 157, 757
AsuC2I	CCSGG	1 cut(s)	338
AsuHPI	GGTGA	4 cut(s)	172, 447, 739, 752
AvaII	GGWCC	3 cut(s)	67, 157, 757
BanI	GGYRCC	2 cut(s)	350, 359
BbvCI	CCTCAGC	1 cut(s)	366
BbvI	GCAGC	3 cut(s)	217, 220, 724
BccI	CCATC	3 cut(s)	98, 181, 472
BceAI	ACGGC	4 cut(s)	274, 383, 604, 655
BciT130I	CCWGG	1 cut(s)	779
BciVI	GTATCC	1 cut(s)	472
BcnI	CCSGG	1 cut(s)	338
BfuAI	ACCTGC	1 cut(s)	633
BfuI	GTATCC	1 cut(s)	472
BglII	AGATCT	1 cut(s)	79
Bme1390I	CCNGG	2 cut(s)	338, 779
Bme18I	GGWCC	3 cut(s)	67, 157, 757
BmeRI	GACNNNNNGTC	1 cut(s)	73
BmgT120I	GGNCC	3 cut(s)	67, 157, 757
BmiI	GGNNCC	4 cut(s)	352, 361, 474, 534
BmrFI	CCNGG	2 cut(s)	338, 779
BmsI	GCATC	3 cut(s)	135, 414, 756
BplI	GAGNNNNNCTC	2 cut(s)	734, 766
Bpu10I	CCTNAGC	1 cut(s)	366
BpuMI	CCSGG	1 cut(s)	338
BsaHI	GRCGYC	1 cut(s)	333
BsaJI	CCNNGG	3 cut(s)	103, 290, 409
BsaWI	WCCGGW	2 cut(s)	475, 557
Bsc4I	CCNNNNNNNGG	1 cut(s)	329
Bse118I	RCCGGY	1 cut(s)	557
BseAI	TCCGGA	1 cut(s)	475
BseBI	CCWGG	1 cut(s)	779
BseDI	CCNNGG	3 cut(s)	103, 290, 409
BseGI	GGATG	3 cut(s)	405, 771, 778
BseLI	CCNNNNNNNGG	1 cut(s)	329
BseMII	CTCAG	3 cut(s)	300, 357, 507
BseRI	GAGGAG	1 cut(s)	92
BseX3I	CGGCCG	1 cut(s)	46
BseXI	GCAGC	3 cut(s)	217, 220, 724
BsgI	GTGCAG	1 cut(s)	83
Bsh1236I	CGCG	4 cut(s)	45, 318, 381, 411
Bsh1285I	CGRYCG	1 cut(s)	49
BshFI	GGCC	3 cut(s)	48, 289, 422
BshNI	GGYRCC	2 cut(s)	350, 359
BshTI	ACCGGT	1 cut(s)	557
BsiEI	CGRYCG	1 cut(s)	49
BsiSI	CCGG	4 cut(s)	49, 337, 476, 558
BslFI	GGGAC	2 cut(s)	428, 650
BslI	CCNNNNNNNGG	1 cut(s)	329
BsmFI	GGGAC	2 cut(s)	428, 650
BsnI	GGCC	3 cut(s)	48, 289, 422
Bsp13I	TCCGGA	1 cut(s)	475
Bsp1407I	TGTACA	1 cut(s)	267
Bsp143I	GATC	2 cut(s)	79, 574
Bsp68I	TCGCGA	1 cut(s)	318
BspANI	GGCC	3 cut(s)	48, 289, 422
BspCNI	CTCAG	3 cut(s)	301, 358, 508
BspEI	TCCGGA	1 cut(s)	475
BspFNI	CGCG	4 cut(s)	45, 318, 381, 411
BspLI	GGNNCC	4 cut(s)	352, 361, 474, 534
BspMI	ACCTGC	1 cut(s)	633
BspPI	GGATC	1 cut(s)	569
BspT107I	GGYRCC	2 cut(s)	350, 359
BsrBI	CCGCTC	1 cut(s)	222
BsrFI	RCCGGY	1 cut(s)	557
BsrGI	TGTACA	1 cut(s)	267
BssAI	RCCGGY	1 cut(s)	557
BssECI	CCNNGG	3 cut(s)	103, 290, 409
BssMI	GATC	2 cut(s)	79, 574
BssNI	GRCGYC	1 cut(s)	333
Bst2UI	CCWGG	1 cut(s)	779
Bst4CI	ACNGT	1 cut(s)	61
Bst6I	CTCTTC	2 cut(s)	457, 491
BstACI	GRCGYC	1 cut(s)	333
BstAUI	TGTACA	1 cut(s)	267
BstC8I	GCNNGC	2 cut(s)	220, 379
BstDEI	CTNAG	4 cut(s)	309, 366, 516, 615
BstDSI	CCRYGG	2 cut(s)	290, 409
BstF5I	GGATG	3 cut(s)	405, 771, 778
BstFNI	CGCG	4 cut(s)	45, 318, 381, 411
BstHHI	GCGC	3 cut(s)	45, 383, 405
BstKTI	GATC	2 cut(s)	82, 577
BstMBI	GATC	2 cut(s)	79, 574
BstMCI	CGRYCG	1 cut(s)	49
BstMWI	GCNNNNNNNGC	7 cut(s)	61, 236, 357, 371, 380, 658, 799
BstNI	CCWGG	1 cut(s)	779
BstSCI	CCNGG	2 cut(s)	336, 777
BstUI	CGCG	4 cut(s)	45, 318, 381, 411
BstV1I	GCAGC	3 cut(s)	217, 220, 724
BstX2I	RGATCY	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	79
BstZI	CGGCCG	1 cut(s)	46
BsuI	GTATCC	1 cut(s)	472
BsuRI	GGCC	3 cut(s)	48, 289, 422
BtgI	CCRYGG	2 cut(s)	290, 409
BtgZI	GCGATG	1 cut(s)	16
BtsCI	GGATG	3 cut(s)	405, 771, 778
BtuMI	TCGCGA	1 cut(s)	318
BveI	ACCTGC	1 cut(s)	633
Cac8I	GCNNGC	2 cut(s)	220, 379
CaiI	CAGNNNCTG	1 cut(s)	808
CfoI	GCGC	3 cut(s)	45, 383, 405
Cfr10I	RCCGGY	1 cut(s)	557
Cfr13I	GGNCC	3 cut(s)	67, 157, 757
Cfr42I	CCGCGG	1 cut(s)	412
CseI	GACGC	1 cut(s)	322
CsiI	ACCWGGT	1 cut(s)	777
Csp6I	GTAC	1 cut(s)	268
CspAI	ACCGGT	1 cut(s)	557
CspCI	CAANNNNNGTGG	2 cut(s)	510, 545
CviQI	GTAC	1 cut(s)	268
DdeI	CTNAG	4 cut(s)	309, 366, 516, 615
DpnI	GATC	2 cut(s)	81, 576
DpnII	GATC	2 cut(s)	79, 574
DraIII	CACNNNGTG	1 cut(s)	154
DriI	GACNNNNNGTC	1 cut(s)	73
EaeI	YGGCCR	1 cut(s)	46
EagI	CGGCCG	1 cut(s)	46
Eam1104I	CTCTTC	2 cut(s)	457, 491
Eam1105I	GACNNNNNGTC	1 cut(s)	73
EarI	CTCTTC	2 cut(s)	457, 491
EclXI	CGGCCG	1 cut(s)	46
Eco47I	GGWCC	3 cut(s)	67, 157, 757
Eco52I	CGGCCG	1 cut(s)	46
Eco57I	CTGAAG	1 cut(s)	674
EcoO109I	RGGNCCY	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	777
FaiI	YATR	8 cut(s)	110, 357, 573, 583, 612, 648, 667, 787
FalI	AAGNNNNNCTT	3 cut(s)	416, 448, 789
FaqI	GGGAC	2 cut(s)	428, 650
FauI	CCCGC	4 cut(s)	215, 386, 404, 622
FokI	GGATG	3 cut(s)	392, 778, 785
FspAI	RTGCGCAY	1 cut(s)	404
FspI	TGCGCA	1 cut(s)	404
GlaI	GCGC	3 cut(s)	44, 382, 404
HaeIII	GGCC	3 cut(s)	48, 289, 422
HapII	CCGG	4 cut(s)	49, 337, 476, 558
HgaI	GACGC	1 cut(s)	322
HhaI	GCGC	3 cut(s)	45, 383, 405
Hin1I	GRCGYC	1 cut(s)	333
Hin6I	GCGC	3 cut(s)	43, 381, 403
HinP1I	GCGC	3 cut(s)	43, 381, 403
HincII	GTYRAC	1 cut(s)	522
HindII	GTYRAC	1 cut(s)	522
HinfI	GANTC	8 cut(s)	145, 313, 518, 538, 677, 718, 743, 749
HpaII	CCGG	4 cut(s)	49, 337, 476, 558
HphI	GGTGA	4 cut(s)	172, 447, 739, 752
Hpy166II	GTNNAC	2 cut(s)	268, 522
Hpy188I	TCNGA	4 cut(s)	25, 79, 97, 748
Hpy188III	TCNNGA	4 cut(s)	83, 317, 476, 553
Hpy8I	GTNNAC	2 cut(s)	268, 522
Hpy99I	CGWCG	1 cut(s)	496
HpyAV	CCTTC	3 cut(s)	208, 236, 649
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4IV	ACGT	1 cut(s)	264
HpyCH4V	TGCA	2 cut(s)	64, 507
HpyF10VI	GCNNNNNNNGC	7 cut(s)	61, 236, 357, 371, 380, 658, 799
HpyF3I	CTNAG	4 cut(s)	309, 366, 516, 615
HpySE526I	ACGT	1 cut(s)	264
Hsp92I	GRCGYC	1 cut(s)	333
HspAI	GCGC	3 cut(s)	43, 381, 403
Kpn2I	TCCGGA	1 cut(s)	475
KspI	CCGCGG	1 cut(s)	412
Kzo9I	GATC	2 cut(s)	79, 574
LmnI	GCTCC	4 cut(s)	478, 532, 658, 669
Lsp1109I	GCAGC	3 cut(s)	217, 220, 724
LweI	GCATC	3 cut(s)	135, 414, 756
MabI	ACCWGGT	1 cut(s)	777
MaeII	ACGT	1 cut(s)	264
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	2 cut(s)	81, 576
MbiI	CCGCTC	1 cut(s)	222
MboI	GATC	2 cut(s)	79, 574
MboII	GAAGA	2 cut(s)	444, 508
MflI	RGATCY	1 cut(s)	79
MlyI	GAGTC	6 cut(s)	527, 532, 686, 727, 743, 752
MmeI	TCCRAC	4 cut(s)	48, 144, 726, 735
MroI	TCCGGA	1 cut(s)	475
MseI	TTAA	1 cut(s)	814
MslI	CAYNNNNRTG	1 cut(s)	591
MspA1I	CMGCKG	2 cut(s)	365, 411
MspI	CCGG	4 cut(s)	49, 337, 476, 558
MspR9I	CCNGG	2 cut(s)	338, 779
MvaI	CCWGG	1 cut(s)	779
MvnI	CGCG	4 cut(s)	45, 318, 381, 411
MwoI	GCNNNNNNNGC	7 cut(s)	61, 236, 357, 371, 380, 658, 799
NciI	CCSGG	1 cut(s)	338
NdeII	GATC	2 cut(s)	79, 574
NlaIV	GGNNCC	4 cut(s)	352, 361, 474, 534
NmeAIII	GCCGAG	3 cut(s)	84, 327, 741
NmuCI	GTSAC	1 cut(s)	190
NruI	TCGCGA	1 cut(s)	318
NsbI	TGCGCA	1 cut(s)	404
OliI	CACNNNNGTG	1 cut(s)	591
PcsI	WCGNNNNNNNCGW	1 cut(s)	488
PfeI	GAWTC	2 cut(s)	145, 313
PinAI	ACCGGT	1 cut(s)	557
PleI	GAGTC	6 cut(s)	526, 532, 685, 726, 743, 751
PpsI	GAGTC	6 cut(s)	526, 532, 685, 726, 743, 751
PpuMI	RGGWCCY	1 cut(s)	67
Psp5II	RGGWCCY	1 cut(s)	67
Psp6I	CCWGG	1 cut(s)	777
PspGI	CCWGG	1 cut(s)	777
PspN4I	GGNNCC	4 cut(s)	352, 361, 474, 534
PspPI	GGNCC	3 cut(s)	67, 157, 757
PspPPI	RGGWCCY	1 cut(s)	67
PstNI	CAGNNNCTG	1 cut(s)	808
PsuI	RGATCY	1 cut(s)	79
RruI	TCGCGA	1 cut(s)	318
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
RseI	CAYNNNNRTG	1 cut(s)	591
SacII	CCGCGG	1 cut(s)	412
SaqAI	TTAA	1 cut(s)	814
Sau3AI	GATC	2 cut(s)	79, 574
Sau96I	GGNCC	3 cut(s)	67, 157, 757
SchI	GAGTC	6 cut(s)	527, 532, 686, 727, 743, 752
ScrFI	CCNGG	2 cut(s)	338, 779
SexAI	ACCWGGT	1 cut(s)	777
SfaNI	GCATC	3 cut(s)	135, 414, 756
Sfr303I	CCGCGG	1 cut(s)	412
SgrBI	CCGCGG	1 cut(s)	412
SinI	GGWCC	3 cut(s)	67, 157, 757
SmiMI	CAYNNNNRTG	1 cut(s)	591
StyD4I	CCNGG	2 cut(s)	336, 777
TaaI	ACNGT	1 cut(s)	61
TaiI	ACGT	1 cut(s)	267
TatI	WGTACW	1 cut(s)	267
TauI	GCSGC	8 cut(s)	38, 48, 239, 308, 377, 398, 487, 490
TfiI	GAWTC	2 cut(s)	145, 313
Tru1I	TTAA	1 cut(s)	814
Tru9I	TTAA	1 cut(s)	814
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	4 cut(s)	230, 233, 712, 802
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	2 cut(s)	19, 405
VpaK11BI	GGWCC	3 cut(s)	67, 157, 757

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.