Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011185

Physical Location & Seq

Genomic Coordinates Reverse (-)

10131681 .. 10133753

Gene Structure 2073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G130300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGTGTGGTGGCGCTATCATTTCCGACTTCATCTCCGCCAAGCGCGGCCGGACGCTGACGGCGGAGGACCTCTGGTCCGAGTTCGACACCATCTCTGACCTCCTTGGCTTAGACCACTCCTCCTCCTCCAACAACAACAACAAGAAGGACCAGTTTGAGCATCAGCAGAACAACAAGAGCATCGCTCAGAAGCCCAAAATACCTCTCTCTAAAGGAGCAGGGACAAGCGAGAAGCCCAAGAAGACGAGCCCAGGTGCAGGTGCAGGTGCAGGTGCACAGAAGGAGGAGGAGGTGGGCAAGGCTAGTGATAAGAATAAGAGAGTGAGGAAAAACGTGTACAGAGGAATAAGGCAGAGGCCGTGGGGCAAATGGGCAGCAGAGATTCGTGATCCGCAGAAAGGCGTCCGGGTGTGGCTAGGCACTTACAACACAGCTGAGGAAGCCGCCAGAGCCTACGACGACGCCGCCAGGCGCATCAGAGGCGGCAAAGCCAAGCTCAACTTTCCGGAATTACCGCCTTCTTCAGTTCCAGCTCCTGCAACACCGCCTTTGAAGAAGCGGTGCGTTGTTGGTCCAGCCGAGTCGACTCAGTCGAGTTTGGGGAGCAGTGGAAATTATTGTAACTGTGATCCGTTTGAGGGTGGCGAGATTTATGGAAAGAAGGAGGTGGGTGGTGAGTATGAGCTGAAGGAGCAGATATCGAGCTTGGAATCGTTCCTGGGTCTGGATGAGGAGGAGCCGAGTGAGGTGAATGGAAGGGGTGGTGGTGAGTCGAACAACTCGTTGGACCTGTGGATGCTAGGTGACCTGGTGACACATCATCATCATCAGCAGCAGCAGCAGCAGCAGCAGGGTCAGCAGCTGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009753 GO:0009755 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010286 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032870 GO:0035556 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071944 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

290

Amino Acids

31.56

Weight (kDa)

7.66

Isoelectric Point (pI)

46.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16770
fragaria_vesca	FvH4_4g18780
malus_domestica	MD13G1163300.v1.1 MD16G1162800.v1.1 MD16G1162900.v1.1
prunus_persica	Prupe.1G130300_v2.0.a1 Prupe.1G130300_v2.0.a1
pyrus_communis	pycom13g13920 pycom16g13800
rosa_chinensis	RchiOBHm_Chr4g0423581
rosa_laevigata	RLG00000007545
rosa_multiflora	Rmu_sc0000464.1_g000024 Rmu_sc0004342.1_g000003
rosa_roxburghii	Rroxscaffold_5G00365800
rosa_rugosa	Rorug04G0188800
rosa_samantha	Rh4AG248300 Rh4BG253500 Rh4CG261600 Rh4DG248800
rosa_wichuraiana	Rw4G021270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	248, 254, 260
Acc36I	ACCTGC	3 cut(s)	248, 254, 260
AccI	GTMKAC	1 cut(s)	584
AccII	CGCG	1 cut(s)	45
AccIII	TCCGGA	1 cut(s)	505
AclWI	GGATC	2 cut(s)	383, 623
AcoI	YGGCCR	1 cut(s)	46
AcuI	CTGAAG	2 cut(s)	507, 707
AcyI	GRCGYC	2 cut(s)	402, 462
AfaI	GTAC	1 cut(s)	338
AfiI	CCNNNNNNNGG	4 cut(s)	257, 398, 638, 724
AflIII	ACRYGT	1 cut(s)	333
AgsI	TTSAA	1 cut(s)	553
AhdI	GACNNNNNGTC	1 cut(s)	73
AjnI	CCWGG	4 cut(s)	250, 467, 717, 807
AjuI	GAANNNNNNNTTGG	2 cut(s)	767, 799
AluBI	AGCT	6 cut(s)	434, 496, 533, 685, 705, 862
AluI	AGCT	6 cut(s)	434, 496, 533, 685, 705, 862
Alw21I	GWGCWC	1 cut(s)	277
Alw44I	GTGCAC	1 cut(s)	273
AlwI	GGATC	2 cut(s)	383, 623
AlwNI	CAGNNNCTG	2 cut(s)	536, 862
Aor13HI	TCCGGA	1 cut(s)	505
AoxI	GGCC	2 cut(s)	46, 356
ApaLI	GTGCAC	1 cut(s)	273
ApeKI	GCWGC	8 cut(s)	374, 832, 835, 838, 841, 844, 847, 859
AspLEI	GCGC	3 cut(s)	14, 45, 474
AspS9I	GGNCC	5 cut(s)	67, 75, 148, 572, 787
AsuC2I	CCSGG	1 cut(s)	407
AsuHPI	GGTGA	5 cut(s)	686, 760, 779, 815, 823
AvaII	GGWCC	5 cut(s)	67, 75, 148, 572, 787
BaeGI	GKGCMC	1 cut(s)	277
BanII	GRGCYC	1 cut(s)	251
BbsI	GAAGAC	1 cut(s)	248
Bbv12I	GWGCWC	1 cut(s)	277
BbvCI	CCTCAGC	1 cut(s)	435
BbvI	GCAGC	7 cut(s)	386, 844, 847, 850, 853, 856, 859
BccI	CCATC	1 cut(s)	98
BceAI	ACGGC	2 cut(s)	75, 343
BciT130I	CCWGG	4 cut(s)	252, 469, 719, 809
BcnI	CCSGG	1 cut(s)	407
BfaI	CTAG	3 cut(s)	303, 416, 800
BfoI	RGCGCY	1 cut(s)	15
BfuAI	ACCTGC	3 cut(s)	248, 254, 260
Bme1390I	CCNGG	5 cut(s)	252, 407, 469, 719, 809
Bme18I	GGWCC	5 cut(s)	67, 75, 148, 572, 787
BmeRI	GACNNNNNGTC	1 cut(s)	73
BmgT120I	GGNCC	5 cut(s)	67, 75, 148, 572, 787
BmiI	GGNNCC	1 cut(s)	738
BmrFI	CCNGG	5 cut(s)	252, 407, 469, 719, 809
BmsI	GCATC	4 cut(s)	169, 189, 483, 786
BpiI	GAAGAC	1 cut(s)	248
BplI	GAGNNNNNCTC	2 cut(s)	169, 201
Bpu10I	CCTNAGC	1 cut(s)	435
BpuMI	CCSGG	1 cut(s)	407
BsaHI	GRCGYC	2 cut(s)	402, 462
BsaJI	CCNNGG	4 cut(s)	103, 250, 359, 718
BsaWI	WCCGGW	1 cut(s)	505
BsaXI	ACNNNNNCTCC	6 cut(s)	17, 47, 104, 107, 134, 137
Bsc4I	CCNNNNNNNGG	4 cut(s)	257, 398, 638, 724
Bse1I	ACTGG	1 cut(s)	151
BseAI	TCCGGA	1 cut(s)	505
BseBI	CCWGG	4 cut(s)	252, 469, 719, 809
BseDI	CCNNGG	4 cut(s)	103, 250, 359, 718
BseGI	GGATG	2 cut(s)	733, 801
BseLI	CCNNNNNNNGG	4 cut(s)	257, 398, 638, 724
BseMII	CTCAG	3 cut(s)	200, 426, 602
BseNI	ACTGG	1 cut(s)	151
BseRI	GAGGAG	7 cut(s)	109, 112, 115, 299, 302, 746, 749
BseSI	GKGCMC	1 cut(s)	277
BseX3I	CGGCCG	1 cut(s)	46
BseXI	GCAGC	7 cut(s)	386, 844, 847, 850, 853, 856, 859
BsgI	GTGCAG	3 cut(s)	276, 282, 288
Bsh1236I	CGCG	1 cut(s)	45
Bsh1285I	CGRYCG	1 cut(s)	49
BshFI	GGCC	2 cut(s)	48, 358
BsiEI	CGRYCG	1 cut(s)	49
BsiHKAI	GWGCWC	1 cut(s)	277
BsiSI	CCGG	3 cut(s)	49, 406, 506
BslFI	GGGAC	1 cut(s)	235
BslI	CCNNNNNNNGG	4 cut(s)	257, 398, 638, 724
BsmFI	GGGAC	1 cut(s)	235
BsnI	GGCC	2 cut(s)	48, 358
Bsp1286I	GDGCHC	2 cut(s)	251, 277
Bsp13I	TCCGGA	1 cut(s)	505
Bsp1407I	TGTACA	1 cut(s)	336
Bsp143I	GATC	2 cut(s)	388, 628
BspANI	GGCC	2 cut(s)	48, 358
BspCNI	CTCAG	3 cut(s)	199, 427, 601
BspEI	TCCGGA	1 cut(s)	505
BspFNI	CGCG	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	738
BspMI	ACCTGC	3 cut(s)	248, 254, 260
BspPI	GGATC	2 cut(s)	383, 623
BsrGI	TGTACA	1 cut(s)	336
BsrI	ACTGG	1 cut(s)	151
BssECI	CCNNGG	4 cut(s)	103, 250, 359, 718
BssMI	GATC	2 cut(s)	388, 628
BssNI	GRCGYC	2 cut(s)	402, 462
BssT1I	CCWWGG	1 cut(s)	103
Bst2UI	CCWGG	4 cut(s)	252, 469, 719, 809
Bst4CI	ACNGT	1 cut(s)	626
BstACI	GRCGYC	2 cut(s)	402, 462
BstAUI	TGTACA	1 cut(s)	336
BstDEI	CTNAG	4 cut(s)	109, 186, 435, 588
BstDSI	CCRYGG	1 cut(s)	359
BstEII	GGTNACC	1 cut(s)	803
BstF5I	GGATG	2 cut(s)	733, 801
BstFNI	CGCG	1 cut(s)	45
BstH2I	RGCGCY	1 cut(s)	15
BstHHI	GCGC	3 cut(s)	14, 45, 474
BstKTI	GATC	2 cut(s)	391, 631
BstMBI	GATC	2 cut(s)	388, 628
BstMCI	CGRYCG	1 cut(s)	49
BstMWI	GCNNNNNNNGC	9 cut(s)	440, 449, 480, 691, 838, 841, 844, 847, 856
BstNI	CCWGG	4 cut(s)	252, 469, 719, 809
BstPI	GGTNACC	1 cut(s)	803
BstSCI	CCNGG	5 cut(s)	250, 405, 467, 717, 807
BstSLI	GKGCMC	1 cut(s)	277
BstUI	CGCG	1 cut(s)	45
BstV1I	GCAGC	7 cut(s)	386, 844, 847, 850, 853, 856, 859
BstV2I	GAAGAC	1 cut(s)	248
BstZI	CGGCCG	1 cut(s)	46
BsuRI	GGCC	2 cut(s)	48, 358
BtgI	CCRYGG	1 cut(s)	359
BtgZI	GCGATG	1 cut(s)	166
BtsCI	GGATG	2 cut(s)	733, 801
BtsI	GCAGTG	1 cut(s)	613
BtsIMutI	CAGTG	1 cut(s)	613
BveI	ACCTGC	3 cut(s)	248, 254, 260
CaiI	CAGNNNCTG	2 cut(s)	536, 862
CfoI	GCGC	3 cut(s)	14, 45, 474
Cfr13I	GGNCC	5 cut(s)	67, 75, 148, 572, 787
CseI	GACGC	3 cut(s)	61, 391, 470
CsiI	ACCWGGT	1 cut(s)	807
Csp6I	GTAC	1 cut(s)	337
CviQI	GTAC	1 cut(s)	337
DdeI	CTNAG	4 cut(s)	109, 186, 435, 588
DpnI	GATC	2 cut(s)	390, 630
DpnII	GATC	2 cut(s)	388, 628
DriI	GACNNNNNGTC	1 cut(s)	73
EaeI	YGGCCR	1 cut(s)	46
EagI	CGGCCG	1 cut(s)	46
Eam1105I	GACNNNNNGTC	1 cut(s)	73
EciI	GGCGGA	2 cut(s)	25, 77
EclXI	CGGCCG	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	103
Eco24I	GRGCYC	1 cut(s)	251
Eco32I	GATATC	1 cut(s)	699
Eco47I	GGWCC	5 cut(s)	67, 75, 148, 572, 787
Eco52I	CGGCCG	1 cut(s)	46
Eco57I	CTGAAG	2 cut(s)	507, 707
Eco91I	GGTNACC	1 cut(s)	803
EcoO109I	RGGNCCY	1 cut(s)	67
EcoO65I	GGTNACC	1 cut(s)	803
EcoRII	CCWGG	4 cut(s)	250, 467, 717, 807
EcoRV	GATATC	1 cut(s)	699
EcoT14I	CCWWGG	1 cut(s)	103
EcoT38I	GRGCYC	1 cut(s)	251
ErhI	CCWWGG	1 cut(s)	103
FaiI	YATR	2 cut(s)	654, 681
FalI	AAGNNNNNCTT	2 cut(s)	485, 517
FaqI	GGGAC	1 cut(s)	235
FblI	GTMKAC	1 cut(s)	584
FokI	GGATG	2 cut(s)	740, 808
FriOI	GRGCYC	1 cut(s)	251
FspBI	CTAG	3 cut(s)	303, 416, 800
GlaI	GCGC	3 cut(s)	13, 44, 473
HaeII	RGCGCY	1 cut(s)	15
HaeIII	GGCC	2 cut(s)	48, 358
HapII	CCGG	3 cut(s)	49, 406, 506
HgaI	GACGC	3 cut(s)	61, 391, 470
HhaI	GCGC	3 cut(s)	14, 45, 474
Hin1I	GRCGYC	2 cut(s)	402, 462
Hin6I	GCGC	3 cut(s)	12, 43, 472
HinP1I	GCGC	3 cut(s)	12, 43, 472
HincII	GTYRAC	1 cut(s)	585
HindII	GTYRAC	1 cut(s)	585
HinfI	GANTC	5 cut(s)	382, 581, 586, 710, 770
HpaII	CCGG	3 cut(s)	49, 406, 506
HphI	GGTGA	5 cut(s)	686, 760, 779, 815, 823
Hpy166II	GTNNAC	3 cut(s)	275, 337, 585
Hpy188I	TCNGA	5 cut(s)	25, 79, 97, 189, 479
Hpy188III	TCNNGA	3 cut(s)	386, 506, 725
Hpy8I	GTNNAC	3 cut(s)	275, 337, 585
Hpy99I	CGWCG	2 cut(s)	461, 464
HpyAV	CCTTC	6 cut(s)	139, 274, 528, 655, 682, 750
HpyCH4III	ACNGT	1 cut(s)	626
HpyCH4IV	ACGT	1 cut(s)	333
HpyCH4V	TGCA	5 cut(s)	257, 263, 269, 275, 539
HpyF10VI	GCNNNNNNNGC	9 cut(s)	440, 449, 480, 691, 838, 841, 844, 847, 856
HpyF3I	CTNAG	4 cut(s)	109, 186, 435, 588
HpySE526I	ACGT	1 cut(s)	333
Hsp92I	GRCGYC	2 cut(s)	402, 462
HspAI	GCGC	3 cut(s)	12, 43, 472
Kpn2I	TCCGGA	1 cut(s)	505
Kzo9I	GATC	2 cut(s)	388, 628
LmnI	GCTCC	5 cut(s)	215, 538, 603, 691, 736
Lsp1109I	GCAGC	7 cut(s)	386, 844, 847, 850, 853, 856, 859
LweI	GCATC	4 cut(s)	169, 189, 483, 786
MabI	ACCWGGT	1 cut(s)	807
MaeI	CTAG	3 cut(s)	303, 416, 800
MaeII	ACGT	1 cut(s)	333
MaeIII	GTNAC	3 cut(s)	620, 803, 811
MalI	GATC	2 cut(s)	390, 630
MboI	GATC	2 cut(s)	388, 628
MboII	GAAGA	3 cut(s)	253, 513, 565
MhlI	GDGCHC	2 cut(s)	251, 277
MluCI	AATT	2 cut(s)	509, 613
MlyI	GAGTC	3 cut(s)	580, 590, 779
MmeI	TCCRAC	3 cut(s)	48, 153, 765
MroI	TCCGGA	1 cut(s)	505
MseI	TTAA	1 cut(s)	868
MspA1I	CMGCKG	2 cut(s)	434, 862
MspI	CCGG	3 cut(s)	49, 406, 506
MspR9I	CCNGG	5 cut(s)	252, 407, 469, 719, 809
MvaI	CCWGG	4 cut(s)	252, 469, 719, 809
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	9 cut(s)	440, 449, 480, 691, 838, 841, 844, 847, 856
NciI	CCSGG	1 cut(s)	407
NdeII	GATC	2 cut(s)	388, 628
NlaIV	GGNNCC	1 cut(s)	738
NmeAIII	GCCGAG	2 cut(s)	604, 765
NmuCI	GTSAC	2 cut(s)	803, 811
PaqCI	CACCTGC	3 cut(s)	248, 254, 260
PcsI	WCGNNNNNNNCGW	2 cut(s)	590, 779
PfeI	GAWTC	2 cut(s)	382, 710
PflFI	GACNNNGTC	1 cut(s)	589
PleI	GAGTC	3 cut(s)	580, 589, 778
PpsI	GAGTC	3 cut(s)	580, 589, 778
PpuMI	RGGWCCY	1 cut(s)	67
Psp5II	RGGWCCY	1 cut(s)	67
Psp6I	CCWGG	4 cut(s)	250, 467, 717, 807
PspEI	GGTNACC	1 cut(s)	803
PspGI	CCWGG	4 cut(s)	250, 467, 717, 807
PspN4I	GGNNCC	1 cut(s)	738
PspPI	GGNCC	5 cut(s)	67, 75, 148, 572, 787
PspPPI	RGGWCCY	1 cut(s)	67
PstNI	CAGNNNCTG	2 cut(s)	536, 862
PsyI	GACNNNGTC	1 cut(s)	589
PvuII	CAGCTG	2 cut(s)	434, 862
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
SalI	GTCGAC	1 cut(s)	583
SaqAI	TTAA	1 cut(s)	868
Sau3AI	GATC	2 cut(s)	388, 628
Sau96I	GGNCC	5 cut(s)	67, 75, 148, 572, 787
SchI	GAGTC	3 cut(s)	580, 590, 779
ScrFI	CCNGG	5 cut(s)	252, 407, 469, 719, 809
SduI	GDGCHC	2 cut(s)	251, 277
SexAI	ACCWGGT	1 cut(s)	807
SfaNI	GCATC	4 cut(s)	169, 189, 483, 786
SinI	GGWCC	5 cut(s)	67, 75, 148, 572, 787
Sse9I	AATT	2 cut(s)	509, 613
SspMI	CTAG	3 cut(s)	303, 416, 800
StyD4I	CCNGG	5 cut(s)	250, 405, 467, 717, 807
StyI	CCWWGG	1 cut(s)	103
TaaI	ACNGT	1 cut(s)	626
TaiI	ACGT	1 cut(s)	336
TaqI	TCGA	5 cut(s)	84, 584, 593, 701, 773
TasI	AATT	2 cut(s)	509, 613
TatI	WGTACW	1 cut(s)	336
TauI	GCSGC	4 cut(s)	48, 446, 467, 486
TfiI	GAWTC	2 cut(s)	382, 710
Tru1I	TTAA	1 cut(s)	868
Tru9I	TTAA	1 cut(s)	868
TscAI	CASTG	1 cut(s)	613
TseFI	GTSAC	2 cut(s)	803, 811
TseI	GCWGC	8 cut(s)	374, 832, 835, 838, 841, 844, 847, 859
Tsp45I	GTSAC	2 cut(s)	803, 811
TspDTI	ATGAA	1 cut(s)	19
TspGWI	ACGGA	1 cut(s)	621
TspRI	CASTG	1 cut(s)	613
Tth111I	GACNNNGTC	1 cut(s)	589
VneI	GTGCAC	1 cut(s)	273
VpaK11BI	GGWCC	5 cut(s)	67, 75, 148, 572, 787
XmiI	GTMKAC	1 cut(s)	584
XspI	CTAG	3 cut(s)	303, 416, 800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.