Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0011185

Physical Location & Seq

Genomic Coordinates Reverse (-)

17992171 .. 17993507

Gene Structure 1337 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007545

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGTGTGGAGGTGCTATCATTTCCGACTTAATCGAGACCAAGCGTGGCCGGAAGCTGACCGCTGAGACCAGTGAGAACCTCTGGTCTCAGCTTGACACCCTCTCTGACCTCCTTGGCTTGGACTCTTCCAGCAACAACCGCCAGGTTCTGCACCACAAGCTCGCTCAGAAGGCAAAGGTGGACCCAAATCCAGTCACCAAAGTGTCGAGTGAAATCAAGGAGAAGAAGACAACTATCGGAGTTGCAGAAGATGGGAAGACGAAGAGAGTGAGGAAGAACATCTACAGAGGAATAAGGCAGAGGCCATGGGGCAAATGGGCGGCCGAGATTCGCGACCCGCACAAAGGCGTAAGAGTCTGGCTCGGAACCTTCAACACACCCGAGGAAGCTGCTCGGGCCTATGATGAAGCCGCCAAGCGCATCCGCGGCGACAAGGCCAAGCTCAACTTCCCTCCACAACCTGCCCCGGCTTCGGCCCAGCTCCAGCCACCCTCCAAGAAACGGTGCATGGCTCTCGAGTCGACTACACCAGCTATGATGGGCATGGAGCCTTACTATCCTTCATTCCAGAATGAGTTCTACTGCAAGAGTGAGACTGCTGCTGATCACCACGAGTGTGAGCTGAAAGAGCAAATCTCGAGCTTGGAGTCTTTCCTGGGCCTGGATGAGTCAGTGTCGTCGAATGAGGTGATGAGTGGACTCGGAATCGGTGAGCCGGACTCAGTGGACCTGTGGATGCTGGATGACCTGGTTACACATCACCAGCAGTACGGTCGTGAGCATCAGCTCGTGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009753 GO:0009755 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010286 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032870 GO:0035556 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071944 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

266

Amino Acids

29.74

Weight (kDa)

6.72

Isoelectric Point (pI)

48.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	95 - 143	5.7e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16770
fragaria_vesca	FvH4_4g18780
malus_domestica	MD13G1163300.v1.1 MD16G1162800.v1.1 MD16G1162900.v1.1
prunus_persica	Prupe.1G130300_v2.0.a1 Prupe.1G130300_v2.0.a1
pyrus_communis	pycom13g13920 pycom16g13800
rosa_chinensis	RchiOBHm_Chr4g0423581
rosa_laevigata	RLG00000007545
rosa_multiflora	Rmu_sc0000464.1_g000024 Rmu_sc0004342.1_g000003
rosa_roxburghii	Rroxscaffold_5G00365800
rosa_rugosa	Rorug04G0188800
rosa_samantha	Rh4AG248300 Rh4BG253500 Rh4CG261600 Rh4DG248800
rosa_wichuraiana	Rw4G021270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	469
AccI	GTMKAC	1 cut(s)	521
AccII	CGCG	2 cut(s)	333, 426
AciI	CCGC	7 cut(s)	60, 139, 320, 338, 411, 424, 426
AcoI	YGGCCR	2 cut(s)	46, 321
AfaI	GTAC	1 cut(s)	770
AfiI	CCNNNNNNNGG	5 cut(s)	118, 344, 472, 501, 661
AgsI	TTSAA	1 cut(s)	373
AjnI	CCWGG	4 cut(s)	141, 654, 660, 747
AjuI	GAANNNNNNNTTGG	2 cut(s)	431, 463
AleI	CACNNNNGTG	2 cut(s)	200, 615
Alw26I	GTCTC	4 cut(s)	29, 59, 90, 587
AlwNI	CAGNNNCTG	1 cut(s)	148
Ama87I	CYCGRG	4 cut(s)	380, 393, 515, 637
AoxI	GGCC	7 cut(s)	46, 302, 321, 396, 435, 474, 658
ApeKI	GCWGC	2 cut(s)	389, 599
Asp700I	GAANNNNTTC	1 cut(s)	575
AspLEI	GCGC	1 cut(s)	420
AspS9I	GGNCC	5 cut(s)	181, 396, 475, 658, 727
AsuC2I	CCSGG	1 cut(s)	467
AsuHPI	GGTGA	5 cut(s)	187, 599, 700, 722, 752
AvaI	CYCGRG	4 cut(s)	380, 393, 515, 637
AvaII	GGWCC	2 cut(s)	181, 727
BarI	GAAGNNNNNNTAC	2 cut(s)	266, 298
BauI	CACGAG	2 cut(s)	611, 788
BbsI	GAAGAC	2 cut(s)	233, 263
BbvI	GCAGC	2 cut(s)	376, 586
BccI	CCATC	2 cut(s)	245, 532
BcgI	CGANNNNNNTGC	6 cut(s)	371, 405, 496, 530, 755, 789
BciT130I	CCWGG	4 cut(s)	143, 656, 662, 749
BclI	TGATCA	1 cut(s)	604
BcnI	CCSGG	1 cut(s)	467
BcoDI	GTCTC	4 cut(s)	29, 59, 90, 587
BfmI	CTRYAG	1 cut(s)	283
BfuAI	ACCTGC	1 cut(s)	469
BisI	GCNGC	5 cut(s)	321, 390, 411, 427, 600
BlsI	GCNGC	5 cut(s)	322, 391, 412, 428, 601
Bme1390I	CCNGG	5 cut(s)	143, 467, 656, 662, 749
Bme18I	GGWCC	2 cut(s)	181, 727
BmeT110I	CYCGRG	4 cut(s)	380, 393, 515, 637
BmgT120I	GGNCC	5 cut(s)	181, 396, 475, 658, 727
BmiI	GGNNCC	3 cut(s)	183, 367, 549
BmrFI	CCNGG	5 cut(s)	143, 467, 656, 662, 749
BmsI	GCATC	3 cut(s)	429, 726, 790
BpiI	GAAGAC	2 cut(s)	233, 263
BplI	GAGNNNNNCTC	6 cut(s)	345, 377, 620, 652, 704, 736
BpmI	CTGGAG	1 cut(s)	467
BpuMI	CCSGG	1 cut(s)	467
BsaI	GGTCTC	3 cut(s)	29, 59, 90
BsaJI	CCNNGG	6 cut(s)	112, 305, 381, 424, 465, 655
Bsc4I	CCNNNNNNNGG	5 cut(s)	118, 344, 472, 501, 661
Bse1I	ACTGG	2 cut(s)	69, 191
BseBI	CCWGG	4 cut(s)	143, 656, 662, 749
BseDI	CCNNGG	6 cut(s)	112, 305, 381, 424, 465, 655
BseGI	GGATG	4 cut(s)	420, 670, 741, 748
BseLI	CCNNNNNNNGG	5 cut(s)	118, 344, 472, 501, 661
BseMII	CTCAG	4 cut(s)	54, 101, 179, 735
BseNI	ACTGG	2 cut(s)	69, 191
BseX3I	CGGCCG	1 cut(s)	321
BseXI	GCAGC	2 cut(s)	376, 586
BseYI	CCCAGC	1 cut(s)	477
BsgI	GTGCAG	1 cut(s)	134
Bsh1236I	CGCG	2 cut(s)	333, 426
Bsh1285I	CGRYCG	2 cut(s)	324, 775
BshFI	GGCC	7 cut(s)	48, 304, 323, 398, 437, 476, 660
BsiEI	CGRYCG	2 cut(s)	324, 775
BsiHKCI	CYCGRG	4 cut(s)	380, 393, 515, 637
BsiSI	CCGG	3 cut(s)	49, 467, 716
BslI	CCNNNNNNNGG	5 cut(s)	118, 344, 472, 501, 661
BsmAI	GTCTC	4 cut(s)	29, 59, 90, 587
BsnI	GGCC	7 cut(s)	48, 304, 323, 398, 437, 476, 660
Bso31I	GGTCTC	3 cut(s)	29, 59, 90
BsoBI	CYCGRG	4 cut(s)	380, 393, 515, 637
Bsp143I	GATC	1 cut(s)	604
Bsp19I	CCATGG	1 cut(s)	305
Bsp68I	TCGCGA	1 cut(s)	333
BspACI	CCGC	7 cut(s)	60, 139, 320, 338, 411, 424, 426
BspANI	GGCC	7 cut(s)	48, 304, 323, 398, 437, 476, 660
BspCNI	CTCAG	4 cut(s)	55, 100, 178, 734
BspFNI	CGCG	2 cut(s)	333, 426
BspLI	GGNNCC	3 cut(s)	183, 367, 549
BspMI	ACCTGC	1 cut(s)	469
BspTNI	GGTCTC	3 cut(s)	29, 59, 90
BsrI	ACTGG	2 cut(s)	69, 191
BssECI	CCNNGG	6 cut(s)	112, 305, 381, 424, 465, 655
BssMI	GATC	1 cut(s)	604
BssSI	CACGAG	2 cut(s)	611, 788
BssT1I	CCWWGG	2 cut(s)	112, 305
Bst2BI	CACGAG	2 cut(s)	611, 788
Bst2UI	CCWGG	4 cut(s)	143, 656, 662, 749
Bst4CI	ACNGT	2 cut(s)	504, 773
Bst6I	CTCTTC	2 cut(s)	130, 257
BstC8I	GCNNGC	1 cut(s)	162
BstDEI	CTNAG	4 cut(s)	63, 87, 165, 721
BstDSI	CCRYGG	2 cut(s)	305, 424
BstF5I	GGATG	4 cut(s)	420, 670, 741, 748
BstFNI	CGCG	2 cut(s)	333, 426
BstHHI	GCGC	1 cut(s)	420
BstKTI	GATC	1 cut(s)	607
BstMAI	GTCTC	4 cut(s)	29, 59, 90, 587
BstMBI	GATC	1 cut(s)	604
BstMCI	CGRYCG	2 cut(s)	324, 775
BstMWI	GCNNNNNNNGC	6 cut(s)	138, 157, 170, 395, 426, 628
BstNI	CCWGG	4 cut(s)	143, 656, 662, 749
BstSCI	CCNGG	5 cut(s)	141, 465, 654, 660, 747
BstSFI	CTRYAG	1 cut(s)	283
BstUI	CGCG	2 cut(s)	333, 426
BstV1I	GCAGC	2 cut(s)	376, 586
BstV2I	GAAGAC	2 cut(s)	233, 263
BstZI	CGGCCG	1 cut(s)	321
BsuRI	GGCC	7 cut(s)	48, 304, 323, 398, 437, 476, 660
BtgI	CCRYGG	2 cut(s)	305, 424
BtsCI	GGATG	4 cut(s)	420, 670, 741, 748
BtsIMutI	CAGTG	3 cut(s)	76, 678, 729
BtuMI	TCGCGA	1 cut(s)	333
BveI	ACCTGC	1 cut(s)	469
Cac8I	GCNNGC	1 cut(s)	162
CaiI	CAGNNNCTG	1 cut(s)	148
CfoI	GCGC	1 cut(s)	420
Cfr13I	GGNCC	5 cut(s)	181, 396, 475, 658, 727
Cfr42I	CCGCGG	1 cut(s)	427
CsiI	ACCWGGT	1 cut(s)	747
Csp6I	GTAC	1 cut(s)	769
CviAII	CATG	3 cut(s)	306, 508, 544
CviQI	GTAC	1 cut(s)	769
DdeI	CTNAG	4 cut(s)	63, 87, 165, 721
DpnI	GATC	1 cut(s)	606
DpnII	GATC	1 cut(s)	604
EaeI	YGGCCR	2 cut(s)	46, 321
EagI	CGGCCG	1 cut(s)	321
Eam1104I	CTCTTC	2 cut(s)	130, 257
EarI	CTCTTC	2 cut(s)	130, 257
EclXI	CGGCCG	1 cut(s)	321
Eco130I	CCWWGG	2 cut(s)	112, 305
Eco31I	GGTCTC	3 cut(s)	29, 59, 90
Eco47I	GGWCC	2 cut(s)	181, 727
Eco52I	CGGCCG	1 cut(s)	321
Eco88I	CYCGRG	4 cut(s)	380, 393, 515, 637
EcoRII	CCWGG	4 cut(s)	141, 654, 660, 747
EcoT14I	CCWWGG	2 cut(s)	112, 305
ErhI	CCWWGG	2 cut(s)	112, 305
FaeI	CATG	3 cut(s)	309, 511, 547
FaiI	YATR	5 cut(s)	307, 402, 509, 536, 545
FalI	AAGNNNNNCTT	2 cut(s)	431, 463
FatI	CATG	3 cut(s)	305, 507, 543
FauI	CCCGC	1 cut(s)	345
FbaI	TGATCA	1 cut(s)	604
FblI	GTMKAC	1 cut(s)	521
Fnu4HI	GCNGC	5 cut(s)	321, 390, 411, 427, 600
FokI	GGATG	4 cut(s)	407, 677, 748, 755
Fsp4HI	GCNGC	5 cut(s)	321, 390, 411, 427, 600
GlaI	GCGC	1 cut(s)	419
GluI	GCNGC	5 cut(s)	321, 390, 411, 427, 600
GsaI	CCCAGC	1 cut(s)	481
GsuI	CTGGAG	1 cut(s)	467
HaeIII	GGCC	7 cut(s)	48, 304, 323, 398, 437, 476, 660
HapII	CCGG	3 cut(s)	49, 467, 716
HhaI	GCGC	1 cut(s)	420
Hin1II	CATG	3 cut(s)	309, 511, 547
Hin6I	GCGC	1 cut(s)	418
HinP1I	GCGC	1 cut(s)	418
HincII	GTYRAC	1 cut(s)	522
HindII	GTYRAC	1 cut(s)	522
HinfI	GANTC	9 cut(s)	122, 328, 354, 518, 647, 668, 699, 705, 719
HpaII	CCGG	3 cut(s)	49, 467, 716
HphI	GGTGA	5 cut(s)	187, 599, 700, 722, 752
Hpy166II	GTNNAC	4 cut(s)	181, 522, 698, 727
Hpy188I	TCNGA	6 cut(s)	25, 106, 168, 239, 365, 704
Hpy188III	TCNNGA	6 cut(s)	34, 332, 515, 568, 637, 776
Hpy8I	GTNNAC	4 cut(s)	181, 522, 698, 727
Hpy99I	CGWCG	1 cut(s)	682
HpyAV	CCTTC	3 cut(s)	163, 379, 570
HpyCH4III	ACNGT	2 cut(s)	504, 773
HpyCH4V	TGCA	4 cut(s)	151, 245, 507, 585
HpyF10VI	GCNNNNNNNGC	6 cut(s)	138, 157, 170, 395, 426, 628
HpyF3I	CTNAG	4 cut(s)	63, 87, 165, 721
Hsp92II	CATG	3 cut(s)	309, 511, 547
HspAI	GCGC	1 cut(s)	418
Ksp22I	TGATCA	1 cut(s)	604
KspI	CCGCGG	1 cut(s)	427
Kzo9I	GATC	1 cut(s)	604
LmnI	GCTCC	2 cut(s)	486, 547
Lsp1109I	GCAGC	2 cut(s)	376, 586
LweI	GCATC	3 cut(s)	429, 726, 790
MabI	ACCWGGT	1 cut(s)	747
MaeIII	GTNAC	2 cut(s)	193, 751
MalI	GATC	1 cut(s)	606
MboI	GATC	1 cut(s)	604
MboII	GAAGA	7 cut(s)	117, 235, 238, 260, 268, 274, 286
MlyI	GAGTC	7 cut(s)	116, 363, 527, 656, 677, 693, 713
MmeI	TCCRAC	1 cut(s)	48
MroXI	GAANNNNTTC	1 cut(s)	575
MseI	TTAA	1 cut(s)	29
MslI	CAYNNNNRTG	2 cut(s)	200, 615
MspA1I	CMGCKG	2 cut(s)	62, 426
MspI	CCGG	3 cut(s)	49, 467, 716
MspR9I	CCNGG	5 cut(s)	143, 467, 656, 662, 749
MvaI	CCWGG	4 cut(s)	143, 656, 662, 749
MvnI	CGCG	2 cut(s)	333, 426
MwoI	GCNNNNNNNGC	6 cut(s)	138, 157, 170, 395, 426, 628
NciI	CCSGG	1 cut(s)	467
NcoI	CCATGG	1 cut(s)	305
NdeII	GATC	1 cut(s)	604
NlaIII	CATG	3 cut(s)	309, 511, 547
NlaIV	GGNNCC	3 cut(s)	183, 367, 549
NmeAIII	GCCGAG	1 cut(s)	349
NmuCI	GTSAC	1 cut(s)	193
NruI	TCGCGA	1 cut(s)	333
OliI	CACNNNNGTG	2 cut(s)	200, 615
PaeR7I	CTCGAG	2 cut(s)	515, 637
PdmI	GAANNNNTTC	1 cut(s)	575
PfeI	GAWTC	2 cut(s)	328, 705
PkrI	GCNGC	5 cut(s)	322, 391, 412, 428, 601
PleI	GAGTC	7 cut(s)	116, 362, 526, 655, 676, 693, 713
PpsI	GAGTC	7 cut(s)	116, 362, 526, 655, 676, 693, 713
Psp6I	CCWGG	4 cut(s)	141, 654, 660, 747
PspFI	CCCAGC	1 cut(s)	477
PspGI	CCWGG	4 cut(s)	141, 654, 660, 747
PspN4I	GGNNCC	3 cut(s)	183, 367, 549
PspPI	GGNCC	5 cut(s)	181, 396, 475, 658, 727
PstNI	CAGNNNCTG	1 cut(s)	148
RruI	TCGCGA	1 cut(s)	333
RsaI	GTAC	1 cut(s)	770
RsaNI	GTAC	1 cut(s)	769
RseI	CAYNNNNRTG	2 cut(s)	200, 615
SacII	CCGCGG	1 cut(s)	427
SalI	GTCGAC	1 cut(s)	520
SaqAI	TTAA	1 cut(s)	29
SatI	GCNGC	5 cut(s)	321, 390, 411, 427, 600
Sau3AI	GATC	1 cut(s)	604
Sau96I	GGNCC	5 cut(s)	181, 396, 475, 658, 727
SchI	GAGTC	7 cut(s)	116, 363, 527, 656, 677, 693, 713
ScrFI	CCNGG	5 cut(s)	143, 467, 656, 662, 749
SexAI	ACCWGGT	1 cut(s)	747
SfaNI	GCATC	3 cut(s)	429, 726, 790
SfcI	CTRYAG	1 cut(s)	283
Sfr274I	CTCGAG	2 cut(s)	515, 637
Sfr303I	CCGCGG	1 cut(s)	427
SgrBI	CCGCGG	1 cut(s)	427
SinI	GGWCC	2 cut(s)	181, 727
SlaI	CTCGAG	2 cut(s)	515, 637
SmiMI	CAYNNNNRTG	2 cut(s)	200, 615
SmlI	CTYRAG	2 cut(s)	515, 637
SmoI	CTYRAG	2 cut(s)	515, 637
SsiI	CCGC	7 cut(s)	60, 139, 320, 338, 411, 424, 426
StyD4I	CCNGG	5 cut(s)	141, 465, 654, 660, 747
StyI	CCWWGG	2 cut(s)	112, 305
TaaI	ACNGT	2 cut(s)	504, 773
TaqI	TCGA	6 cut(s)	33, 206, 516, 521, 638, 680
TauI	GCSGC	3 cut(s)	323, 413, 429
TfiI	GAWTC	2 cut(s)	328, 705
Tru1I	TTAA	1 cut(s)	29
Tru9I	TTAA	1 cut(s)	29
TscAI	CASTG	3 cut(s)	76, 678, 729
TseFI	GTSAC	1 cut(s)	193
TseI	GCWGC	2 cut(s)	389, 599
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	2 cut(s)	420, 552
TspRI	CASTG	3 cut(s)	76, 678, 729
VpaK11BI	GGWCC	2 cut(s)	181, 727
XcmI	CCANNNNNNNNNTGG	1 cut(s)	312
XhoI	CTCGAG	2 cut(s)	515, 637
XmiI	GTMKAC	1 cut(s)	521
XmnI	GAANNNNTTC	1 cut(s)	575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.