Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0011185

Physical Location & Seq

Genomic Coordinates Forward (+)

47541127 .. 47542806

Gene Structure 1680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00365800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGTGTGGAGGTGCTATCATTTCCGACTTCACCGAGGCCAAGCGTGGCTGGAAGCTGACCGCTGAGGGCCTCTTGTCTGAGCTTGACACCTTCTCTGACCTCCTTGGCTTGGACTCTCCCAGCAACACCCGCCAGGTTCCGCACCACAAGCTCGCTCAGAAGGCAAAGGTGGACCCAAATCCAGTCACCAAAGTTGCAGTGTCGAGTGAAATCAAGGAAAAGAAGACAACTATCGGAGTTGCAGAAGATGGGAAGACGAAGAGAGTGAGGAAGAACATCTACAGAGGAATAAGGCAGAGGCCATGGGGCAAATGGGCGGCCGAGATTCGCGACCCGCACAAAGGCTTAAGAGTCTGGCTCGGAACCTTCAACACACCCGAGGAAGCTGCTCGGGCCTATGATGAAGCCGCCAAGCGCATCCGCGGCGACAAGGCCAAGCTCAACTTCCCTCCACAACCTGCCCCGGTTCCTGCTCCGGCTTCGGCCCAGCTCCAGCCACCCTCCAAGAAGCGGTGCATGGCTCTCGAGTCGACTGCACCAGCTATGATGGGCATGGAGCCTTACTATCCTTCATTCCAGAATGAGTTCTACTGTAAGAGTGAGACTGCTGATCGCCGTGAGTGTGAGCTGAAAGAGCAAATCTCGAGCTTGGAGTCTTTCCTGGGCCTGGATGAGTCAGTGTCGTCGAATGAGGTGATGAGTGGACTCGGAATCGGTGAGCCGGACTCAGTGGACCTGTGGATGCTGGATGACCTGGTTACACATCACCAGCAGCAAGGTCGTGAGCATCAGCTCGTGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009753 GO:0009755 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010286 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032870 GO:0035556 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071944 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

267

Amino Acids

29.78

Weight (kDa)

7.02

Isoelectric Point (pI)

55.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	94 - 142	1e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16770
fragaria_vesca	FvH4_4g18780
malus_domestica	MD13G1163300.v1.1 MD16G1162800.v1.1 MD16G1162900.v1.1
prunus_persica	Prupe.1G130300_v2.0.a1 Prupe.1G130300_v2.0.a1
pyrus_communis	pycom13g13920 pycom16g13800
rosa_chinensis	RchiOBHm_Chr4g0423581
rosa_laevigata	RLG00000007545
rosa_multiflora	Rmu_sc0000464.1_g000024 Rmu_sc0004342.1_g000003
rosa_roxburghii	Rroxscaffold_5G00365800
rosa_rugosa	Rorug04G0188800
rosa_samantha	Rh4AG248300 Rh4BG253500 Rh4CG261600 Rh4DG248800
rosa_wichuraiana	Rw4G021270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	466
AccI	GTMKAC	1 cut(s)	530
AccII	CGCG	2 cut(s)	330, 423
AciI	CCGC	9 cut(s)	60, 130, 140, 317, 335, 408, 421, 423, 511
AcoI	YGGCCR	1 cut(s)	318
AfiI	CCNNNNNNNGG	4 cut(s)	109, 341, 510, 667
AflII	CTTAAG	1 cut(s)	346
AgsI	TTSAA	1 cut(s)	370
AjnI	CCWGG	4 cut(s)	132, 660, 666, 753
AjuI	GAANNNNNNNTTGG	2 cut(s)	428, 460
Alw26I	GTCTC	1 cut(s)	596
Ama87I	CYCGRG	4 cut(s)	377, 390, 524, 643
AoxI	GGCC	8 cut(s)	36, 67, 299, 318, 393, 432, 483, 664
ApeKI	GCWGC	2 cut(s)	386, 772
Asp700I	GAANNNNTTC	1 cut(s)	584
AspLEI	GCGC	1 cut(s)	417
AspS9I	GGNCC	6 cut(s)	67, 172, 393, 484, 664, 733
AsuC2I	CCSGG	1 cut(s)	464
AsuHPI	GGTGA	5 cut(s)	22, 178, 706, 728, 758
AvaI	CYCGRG	4 cut(s)	377, 390, 524, 643
AvaII	GGWCC	2 cut(s)	172, 733
BarI	GAAGNNNNNNTAC	2 cut(s)	263, 295
BauI	CACGAG	1 cut(s)	794
BbsI	GAAGAC	2 cut(s)	230, 260
BbvCI	CCTCAGC	1 cut(s)	63
BbvI	GCAGC	2 cut(s)	373, 784
BccI	CCATC	2 cut(s)	242, 541
BceAI	ACGGC	1 cut(s)	600
BcgI	CGANNNNNNTGC	8 cut(s)	368, 402, 505, 515, 539, 549, 761, 795
BciT130I	CCWGG	4 cut(s)	134, 662, 668, 755
BcnI	CCSGG	1 cut(s)	464
BcoDI	GTCTC	1 cut(s)	596
BfmI	CTRYAG	1 cut(s)	280
BfrI	CTTAAG	1 cut(s)	346
BfuAI	ACCTGC	1 cut(s)	466
BisI	GCNGC	5 cut(s)	318, 387, 408, 424, 773
BlsI	GCNGC	5 cut(s)	319, 388, 409, 425, 774
Bme1390I	CCNGG	5 cut(s)	134, 464, 662, 668, 755
Bme18I	GGWCC	2 cut(s)	172, 733
BmeT110I	CYCGRG	4 cut(s)	377, 390, 524, 643
BmgT120I	GGNCC	6 cut(s)	67, 172, 393, 484, 664, 733
BmiI	GGNNCC	5 cut(s)	138, 174, 364, 468, 558
BmrFI	CCNGG	5 cut(s)	134, 464, 662, 668, 755
BmsI	GCATC	3 cut(s)	426, 732, 796
BpiI	GAAGAC	2 cut(s)	230, 260
BplI	GAGNNNNNCTC	6 cut(s)	342, 374, 626, 658, 710, 742
BpmI	CTGGAG	1 cut(s)	476
Bpu10I	CCTNAGC	1 cut(s)	63
BpuMI	CCSGG	1 cut(s)	464
BsaJI	CCNNGG	7 cut(s)	33, 103, 302, 378, 421, 462, 661
Bsc4I	CCNNNNNNNGG	4 cut(s)	109, 341, 510, 667
Bse1I	ACTGG	1 cut(s)	182
BseBI	CCWGG	4 cut(s)	134, 662, 668, 755
BseDI	CCNNGG	7 cut(s)	33, 103, 302, 378, 421, 462, 661
BseGI	GGATG	4 cut(s)	417, 676, 747, 754
BseLI	CCNNNNNNNGG	4 cut(s)	109, 341, 510, 667
BseMII	CTCAG	4 cut(s)	54, 69, 170, 741
BseNI	ACTGG	1 cut(s)	182
BseX3I	CGGCCG	1 cut(s)	318
BseXI	GCAGC	2 cut(s)	373, 784
BseYI	CCCAGC	2 cut(s)	119, 486
BsgI	GTGCAG	1 cut(s)	519
Bsh1236I	CGCG	2 cut(s)	330, 423
Bsh1285I	CGRYCG	1 cut(s)	321
BshFI	GGCC	8 cut(s)	38, 69, 301, 320, 395, 434, 485, 666
BsiEI	CGRYCG	1 cut(s)	321
BsiHKCI	CYCGRG	4 cut(s)	377, 390, 524, 643
BsiSI	CCGG	3 cut(s)	464, 476, 722
BslI	CCNNNNNNNGG	4 cut(s)	109, 341, 510, 667
BsmAI	GTCTC	1 cut(s)	596
BsnI	GGCC	8 cut(s)	38, 69, 301, 320, 395, 434, 485, 666
BsoBI	CYCGRG	4 cut(s)	377, 390, 524, 643
Bsp143I	GATC	1 cut(s)	610
Bsp19I	CCATGG	1 cut(s)	302
Bsp68I	TCGCGA	1 cut(s)	330
BspACI	CCGC	9 cut(s)	60, 130, 140, 317, 335, 408, 421, 423, 511
BspANI	GGCC	8 cut(s)	38, 69, 301, 320, 395, 434, 485, 666
BspCNI	CTCAG	4 cut(s)	55, 70, 169, 740
BspFNI	CGCG	2 cut(s)	330, 423
BspLI	GGNNCC	5 cut(s)	138, 174, 364, 468, 558
BspMI	ACCTGC	1 cut(s)	466
BspTI	CTTAAG	1 cut(s)	346
BsrI	ACTGG	1 cut(s)	182
BssECI	CCNNGG	7 cut(s)	33, 103, 302, 378, 421, 462, 661
BssMI	GATC	1 cut(s)	610
BssSI	CACGAG	1 cut(s)	794
BssT1I	CCWWGG	2 cut(s)	103, 302
Bst2BI	CACGAG	1 cut(s)	794
Bst2UI	CCWGG	4 cut(s)	134, 662, 668, 755
Bst4CI	ACNGT	1 cut(s)	593
Bst6I	CTCTTC	1 cut(s)	254
BstAFI	CTTAAG	1 cut(s)	346
BstC8I	GCNNGC	1 cut(s)	153
BstDEI	CTNAG	4 cut(s)	63, 78, 156, 727
BstDSI	CCRYGG	2 cut(s)	302, 421
BstF5I	GGATG	4 cut(s)	417, 676, 747, 754
BstFNI	CGCG	2 cut(s)	330, 423
BstHHI	GCGC	1 cut(s)	417
BstKTI	GATC	1 cut(s)	613
BstMAI	GTCTC	1 cut(s)	596
BstMBI	GATC	1 cut(s)	610
BstMCI	CGRYCG	1 cut(s)	321
BstMWI	GCNNNNNNNGC	6 cut(s)	129, 148, 161, 392, 423, 634
BstNI	CCWGG	4 cut(s)	134, 662, 668, 755
BstSCI	CCNGG	5 cut(s)	132, 462, 660, 666, 753
BstSFI	CTRYAG	1 cut(s)	280
BstUI	CGCG	2 cut(s)	330, 423
BstV1I	GCAGC	2 cut(s)	373, 784
BstV2I	GAAGAC	2 cut(s)	230, 260
BstZI	CGGCCG	1 cut(s)	318
BsuRI	GGCC	8 cut(s)	38, 69, 301, 320, 395, 434, 485, 666
BtgI	CCRYGG	2 cut(s)	302, 421
BtsCI	GGATG	4 cut(s)	417, 676, 747, 754
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	3 cut(s)	204, 684, 735
BtuMI	TCGCGA	1 cut(s)	330
BveI	ACCTGC	1 cut(s)	466
Cac8I	GCNNGC	1 cut(s)	153
CfoI	GCGC	1 cut(s)	417
Cfr13I	GGNCC	6 cut(s)	67, 172, 393, 484, 664, 733
Cfr42I	CCGCGG	1 cut(s)	424
CsiI	ACCWGGT	1 cut(s)	753
CviAII	CATG	3 cut(s)	303, 517, 553
DdeI	CTNAG	4 cut(s)	63, 78, 156, 727
DpnI	GATC	1 cut(s)	612
DpnII	GATC	1 cut(s)	610
EaeI	YGGCCR	1 cut(s)	318
EagI	CGGCCG	1 cut(s)	318
Eam1104I	CTCTTC	1 cut(s)	254
EarI	CTCTTC	1 cut(s)	254
EclXI	CGGCCG	1 cut(s)	318
Eco130I	CCWWGG	2 cut(s)	103, 302
Eco47I	GGWCC	2 cut(s)	172, 733
Eco52I	CGGCCG	1 cut(s)	318
Eco88I	CYCGRG	4 cut(s)	377, 390, 524, 643
EcoO109I	RGGNCCY	1 cut(s)	67
EcoRII	CCWGG	4 cut(s)	132, 660, 666, 753
EcoT14I	CCWWGG	2 cut(s)	103, 302
ErhI	CCWWGG	2 cut(s)	103, 302
FaeI	CATG	3 cut(s)	306, 520, 556
FaiI	YATR	5 cut(s)	304, 399, 518, 545, 554
FalI	AAGNNNNNCTT	2 cut(s)	428, 460
FatI	CATG	3 cut(s)	302, 516, 552
FauI	CCCGC	2 cut(s)	137, 342
FblI	GTMKAC	1 cut(s)	530
Fnu4HI	GCNGC	5 cut(s)	318, 387, 408, 424, 773
FokI	GGATG	4 cut(s)	404, 683, 754, 761
Fsp4HI	GCNGC	5 cut(s)	318, 387, 408, 424, 773
GlaI	GCGC	1 cut(s)	416
GluI	GCNGC	5 cut(s)	318, 387, 408, 424, 773
GsaI	CCCAGC	2 cut(s)	123, 490
GsuI	CTGGAG	1 cut(s)	476
HaeIII	GGCC	8 cut(s)	38, 69, 301, 320, 395, 434, 485, 666
HapII	CCGG	3 cut(s)	464, 476, 722
HhaI	GCGC	1 cut(s)	417
Hin1II	CATG	3 cut(s)	306, 520, 556
Hin6I	GCGC	1 cut(s)	415
HinP1I	GCGC	1 cut(s)	415
HincII	GTYRAC	1 cut(s)	531
HindII	GTYRAC	1 cut(s)	531
HinfI	GANTC	9 cut(s)	113, 325, 351, 527, 653, 674, 705, 711, 725
HpaII	CCGG	3 cut(s)	464, 476, 722
HphI	GGTGA	5 cut(s)	22, 178, 706, 728, 758
Hpy166II	GTNNAC	4 cut(s)	172, 531, 704, 733
Hpy188I	TCNGA	7 cut(s)	25, 79, 97, 159, 236, 362, 710
Hpy188III	TCNNGA	5 cut(s)	329, 524, 577, 643, 782
Hpy8I	GTNNAC	4 cut(s)	172, 531, 704, 733
Hpy99I	CGWCG	1 cut(s)	688
HpyAV	CCTTC	4 cut(s)	100, 154, 376, 579
HpyCH4III	ACNGT	1 cut(s)	593
HpyCH4V	TGCA	4 cut(s)	197, 242, 516, 536
HpyF10VI	GCNNNNNNNGC	6 cut(s)	129, 148, 161, 392, 423, 634
HpyF3I	CTNAG	4 cut(s)	63, 78, 156, 727
Hsp92II	CATG	3 cut(s)	306, 520, 556
HspAI	GCGC	1 cut(s)	415
KspI	CCGCGG	1 cut(s)	424
Kzo9I	GATC	1 cut(s)	610
LmnI	GCTCC	3 cut(s)	478, 495, 556
Lsp1109I	GCAGC	2 cut(s)	373, 784
LweI	GCATC	3 cut(s)	426, 732, 796
MabI	ACCWGGT	1 cut(s)	753
MaeIII	GTNAC	2 cut(s)	184, 757
MalI	GATC	1 cut(s)	612
MboI	GATC	1 cut(s)	610
MboII	GAAGA	5 cut(s)	235, 257, 265, 271, 283
MlyI	GAGTC	7 cut(s)	107, 360, 536, 662, 683, 699, 719
MmeI	TCCRAC	1 cut(s)	48
MroXI	GAANNNNTTC	1 cut(s)	584
MseI	TTAA	1 cut(s)	347
MspA1I	CMGCKG	2 cut(s)	62, 423
MspCI	CTTAAG	1 cut(s)	346
MspI	CCGG	3 cut(s)	464, 476, 722
MspR9I	CCNGG	5 cut(s)	134, 464, 662, 668, 755
MvaI	CCWGG	4 cut(s)	134, 662, 668, 755
MvnI	CGCG	2 cut(s)	330, 423
MwoI	GCNNNNNNNGC	6 cut(s)	129, 148, 161, 392, 423, 634
NciI	CCSGG	1 cut(s)	464
NcoI	CCATGG	1 cut(s)	302
NdeII	GATC	1 cut(s)	610
NlaIII	CATG	3 cut(s)	306, 520, 556
NlaIV	GGNNCC	5 cut(s)	138, 174, 364, 468, 558
NmeAIII	GCCGAG	1 cut(s)	346
NmuCI	GTSAC	1 cut(s)	184
NruI	TCGCGA	1 cut(s)	330
PaeR7I	CTCGAG	2 cut(s)	524, 643
PdmI	GAANNNNTTC	1 cut(s)	584
PfeI	GAWTC	2 cut(s)	325, 711
PkrI	GCNGC	5 cut(s)	319, 388, 409, 425, 774
PleI	GAGTC	7 cut(s)	107, 359, 535, 661, 682, 699, 719
PpsI	GAGTC	7 cut(s)	107, 359, 535, 661, 682, 699, 719
Psp6I	CCWGG	4 cut(s)	132, 660, 666, 753
PspFI	CCCAGC	2 cut(s)	119, 486
PspGI	CCWGG	4 cut(s)	132, 660, 666, 753
PspN4I	GGNNCC	5 cut(s)	138, 174, 364, 468, 558
PspPI	GGNCC	6 cut(s)	67, 172, 393, 484, 664, 733
RruI	TCGCGA	1 cut(s)	330
SacII	CCGCGG	1 cut(s)	424
SalI	GTCGAC	1 cut(s)	529
SaqAI	TTAA	1 cut(s)	347
SatI	GCNGC	5 cut(s)	318, 387, 408, 424, 773
Sau3AI	GATC	1 cut(s)	610
Sau96I	GGNCC	6 cut(s)	67, 172, 393, 484, 664, 733
SchI	GAGTC	7 cut(s)	107, 360, 536, 662, 683, 699, 719
ScrFI	CCNGG	5 cut(s)	134, 464, 662, 668, 755
SexAI	ACCWGGT	1 cut(s)	753
SfaNI	GCATC	3 cut(s)	426, 732, 796
SfcI	CTRYAG	1 cut(s)	280
Sfr274I	CTCGAG	2 cut(s)	524, 643
Sfr303I	CCGCGG	1 cut(s)	424
SgrBI	CCGCGG	1 cut(s)	424
SinI	GGWCC	2 cut(s)	172, 733
SlaI	CTCGAG	2 cut(s)	524, 643
SmlI	CTYRAG	3 cut(s)	346, 524, 643
SmoI	CTYRAG	3 cut(s)	346, 524, 643
SsiI	CCGC	9 cut(s)	60, 130, 140, 317, 335, 408, 421, 423, 511
StyD4I	CCNGG	5 cut(s)	132, 462, 660, 666, 753
StyI	CCWWGG	2 cut(s)	103, 302
TaaI	ACNGT	1 cut(s)	593
TaqI	TCGA	5 cut(s)	203, 525, 530, 644, 686
TauI	GCSGC	3 cut(s)	320, 410, 426
TfiI	GAWTC	2 cut(s)	325, 711
Tru1I	TTAA	1 cut(s)	347
Tru9I	TTAA	1 cut(s)	347
TscAI	CASTG	3 cut(s)	204, 684, 735
TseFI	GTSAC	1 cut(s)	184
TseI	GCWGC	2 cut(s)	386, 772
Tsp45I	GTSAC	1 cut(s)	184
TspDTI	ATGAA	2 cut(s)	417, 561
TspRI	CASTG	3 cut(s)	204, 684, 735
Vha464I	CTTAAG	1 cut(s)	346
VpaK11BI	GGWCC	2 cut(s)	172, 733
XcmI	CCANNNNNNNNNTGG	1 cut(s)	309
XhoI	CTCGAG	2 cut(s)	524, 643
XmiI	GTMKAC	1 cut(s)	530
XmnI	GAANNNNTTC	1 cut(s)	584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.