Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011185

Physical Location & Seq

Genomic Coordinates Forward (+)

49240670 .. 49242452

Gene Structure 1783 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39294

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGTGTGGAGGTGCTATCATTTCCGACTTCACCGAGGCCAAGCGTGGCTGGAAGCTGACCGCTGAGGGCCTCTGGTCTGAGCTTGACACCATCTCTGACCTCCTTGGCTTGGACTCTTCCAGCAACAACCGCCAGGTTCCGCACCACAACCTCGCTCAGAAGGCAAAGGTGGACCCAAATCCAGTCACCAAAGTTGCAGAAGATGGGAAGACGAAGAGAGTGAGGAAGAACATCTACAGAGGAATAAGGCAGAGGCCATGGGGCAAATGGGCGGCCGAGATTCGCGACCCGCACAAAGGCGTAAGAGTCTGGCTCGGAACCTTCAACACACCCGAGGAAGCTGCTCGGGCCTATGATGAAGCCGCCAGGCGCATCCGCGGCGACAAGGCCAAGCTCAACTTCCCTCCACAACCTGCCCCGGTTCCTGCTCCGGCTCCGGCTTCGGCCCAGCTCCAGCCACCCTCCAAGAAGCGGTGCATGGCTCTCGAGTCGACTGCACCAGCTATGATGGGCATGGAGCCTTACTATCCTTCATTCCAGAATGAGTTCTACTGTAAGAGTGAGACTGCTGCTGGTCACCATGAGTGTGAGCTGAAAGAGCAAATCTCGAGCTTGGAGTCTTTCCTGGGCCTGGATGAGTCAGTGTCGTCGAATGAGGTTATGAGTGGACTTGGAATCGGTGAGCCGGACTCAGTGGACCTGTGGATGCTGGATGACCTGGTTACACATCACCAGCAGCAAGGTCGTGAGCATCAGCTCGTGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009753 GO:0009755 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010286 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032870 GO:0035556 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071944 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

255

Amino Acids

28.39

Weight (kDa)

6.26

Isoelectric Point (pI)

55.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	79 - 127	1.1e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16770
fragaria_vesca	FvH4_4g18780
malus_domestica	MD13G1163300.v1.1 MD16G1162800.v1.1 MD16G1162900.v1.1
prunus_persica	Prupe.1G130300_v2.0.a1 Prupe.1G130300_v2.0.a1
pyrus_communis	pycom13g13920 pycom16g13800
rosa_chinensis	RchiOBHm_Chr4g0423581
rosa_laevigata	RLG00000007545
rosa_multiflora	Rmu_sc0000464.1_g000024 Rmu_sc0004342.1_g000003
rosa_roxburghii	Rroxscaffold_5G00365800
rosa_rugosa	Rorug04G0188800
rosa_samantha	Rh4AG248300 Rh4BG253500 Rh4CG261600 Rh4DG248800
rosa_wichuraiana	Rw4G021270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	421
AccI	GTMKAC	1 cut(s)	491
AccII	CGCG	2 cut(s)	285, 378
AciI	CCGC	9 cut(s)	60, 130, 140, 272, 290, 363, 376, 378, 472
AcoI	YGGCCR	1 cut(s)	273
AfiI	CCNNNNNNNGG	4 cut(s)	109, 296, 471, 631
AgsI	TTSAA	1 cut(s)	325
AjnI	CCWGG	5 cut(s)	132, 365, 624, 630, 717
AjuI	GAANNNNNNNTTGG	2 cut(s)	383, 415
AluBI	AGCT	9 cut(s)	55, 82, 341, 394, 451, 503, 592, 612, 757
AluI	AGCT	9 cut(s)	55, 82, 341, 394, 451, 503, 592, 612, 757
Alw26I	GTCTC	1 cut(s)	557
Ama87I	CYCGRG	4 cut(s)	332, 345, 485, 607
AoxI	GGCC	8 cut(s)	36, 67, 254, 273, 348, 387, 444, 628
ApeKI	GCWGC	3 cut(s)	341, 569, 736
Asp700I	GAANNNNTTC	1 cut(s)	545
AspLEI	GCGC	1 cut(s)	372
AspS9I	GGNCC	6 cut(s)	67, 172, 348, 445, 628, 697
AsuC2I	CCSGG	1 cut(s)	419
AsuHPI	GGTGA	5 cut(s)	22, 178, 569, 692, 722
AvaI	CYCGRG	4 cut(s)	332, 345, 485, 607
AvaII	GGWCC	2 cut(s)	172, 697
BarI	GAAGNNNNNNTAC	2 cut(s)	218, 250
BauI	CACGAG	1 cut(s)	758
BbsI	GAAGAC	1 cut(s)	215
BbvCI	CCTCAGC	1 cut(s)	63
BbvI	GCAGC	3 cut(s)	328, 556, 748
BccI	CCATC	3 cut(s)	98, 197, 502
BcgI	CGANNNNNNTGC	8 cut(s)	323, 357, 466, 476, 500, 510, 725, 759
BciT130I	CCWGG	5 cut(s)	134, 367, 626, 632, 719
BcnI	CCSGG	1 cut(s)	419
BcoDI	GTCTC	1 cut(s)	557
BfmI	CTRYAG	1 cut(s)	235
BfuAI	ACCTGC	1 cut(s)	421
BisI	GCNGC	6 cut(s)	273, 342, 363, 379, 570, 737
BlsI	GCNGC	6 cut(s)	274, 343, 364, 380, 571, 738
Bme1390I	CCNGG	6 cut(s)	134, 367, 419, 626, 632, 719
Bme18I	GGWCC	2 cut(s)	172, 697
BmeT110I	CYCGRG	4 cut(s)	332, 345, 485, 607
BmgT120I	GGNCC	6 cut(s)	67, 172, 348, 445, 628, 697
BmiI	GGNNCC	6 cut(s)	138, 174, 319, 423, 435, 519
BmrFI	CCNGG	6 cut(s)	134, 367, 419, 626, 632, 719
BmsI	GCATC	3 cut(s)	381, 696, 760
BpiI	GAAGAC	1 cut(s)	215
BplI	GAGNNNNNCTC	6 cut(s)	297, 329, 590, 622, 674, 706
BpmI	CTGGAG	1 cut(s)	437
Bpu10I	CCTNAGC	1 cut(s)	63
BpuMI	CCSGG	1 cut(s)	419
BsaJI	CCNNGG	7 cut(s)	33, 103, 257, 333, 376, 417, 625
Bsc4I	CCNNNNNNNGG	4 cut(s)	109, 296, 471, 631
Bse1I	ACTGG	1 cut(s)	182
BseBI	CCWGG	5 cut(s)	134, 367, 626, 632, 719
BseDI	CCNNGG	7 cut(s)	33, 103, 257, 333, 376, 417, 625
BseGI	GGATG	4 cut(s)	372, 640, 711, 718
BseLI	CCNNNNNNNGG	4 cut(s)	109, 296, 471, 631
BseMII	CTCAG	4 cut(s)	54, 69, 170, 705
BseNI	ACTGG	1 cut(s)	182
BseX3I	CGGCCG	1 cut(s)	273
BseXI	GCAGC	3 cut(s)	328, 556, 748
BseYI	CCCAGC	1 cut(s)	447
BsgI	GTGCAG	1 cut(s)	480
Bsh1236I	CGCG	2 cut(s)	285, 378
Bsh1285I	CGRYCG	1 cut(s)	276
BshFI	GGCC	8 cut(s)	38, 69, 256, 275, 350, 389, 446, 630
BsiEI	CGRYCG	1 cut(s)	276
BsiHKCI	CYCGRG	4 cut(s)	332, 345, 485, 607
BsiSI	CCGG	4 cut(s)	419, 431, 437, 686
BslI	CCNNNNNNNGG	4 cut(s)	109, 296, 471, 631
BsmAI	GTCTC	1 cut(s)	557
BsnI	GGCC	8 cut(s)	38, 69, 256, 275, 350, 389, 446, 630
BsoBI	CYCGRG	4 cut(s)	332, 345, 485, 607
Bsp19I	CCATGG	1 cut(s)	257
Bsp68I	TCGCGA	1 cut(s)	285
BspACI	CCGC	9 cut(s)	60, 130, 140, 272, 290, 363, 376, 378, 472
BspANI	GGCC	8 cut(s)	38, 69, 256, 275, 350, 389, 446, 630
BspCNI	CTCAG	4 cut(s)	55, 70, 169, 704
BspFNI	CGCG	2 cut(s)	285, 378
BspLI	GGNNCC	6 cut(s)	138, 174, 319, 423, 435, 519
BspMI	ACCTGC	1 cut(s)	421
BsrI	ACTGG	1 cut(s)	182
BssECI	CCNNGG	7 cut(s)	33, 103, 257, 333, 376, 417, 625
BssSI	CACGAG	1 cut(s)	758
BssT1I	CCWWGG	2 cut(s)	103, 257
Bst2BI	CACGAG	1 cut(s)	758
Bst2UI	CCWGG	5 cut(s)	134, 367, 626, 632, 719
Bst4CI	ACNGT	1 cut(s)	554
Bst6I	CTCTTC	2 cut(s)	121, 209
BstDEI	CTNAG	4 cut(s)	63, 78, 156, 691
BstDSI	CCRYGG	2 cut(s)	257, 376
BstEII	GGTNACC	1 cut(s)	575
BstF5I	GGATG	4 cut(s)	372, 640, 711, 718
BstFNI	CGCG	2 cut(s)	285, 378
BstHHI	GCGC	1 cut(s)	372
BstMAI	GTCTC	1 cut(s)	557
BstMCI	CGRYCG	1 cut(s)	276
BstMWI	GCNNNNNNNGC	5 cut(s)	129, 161, 347, 378, 598
BstNI	CCWGG	5 cut(s)	134, 367, 626, 632, 719
BstPI	GGTNACC	1 cut(s)	575
BstSCI	CCNGG	6 cut(s)	132, 365, 417, 624, 630, 717
BstSFI	CTRYAG	1 cut(s)	235
BstUI	CGCG	2 cut(s)	285, 378
BstV1I	GCAGC	3 cut(s)	328, 556, 748
BstV2I	GAAGAC	1 cut(s)	215
BstZI	CGGCCG	1 cut(s)	273
BsuRI	GGCC	8 cut(s)	38, 69, 256, 275, 350, 389, 446, 630
BtgI	CCRYGG	2 cut(s)	257, 376
BtsCI	GGATG	4 cut(s)	372, 640, 711, 718
BtsIMutI	CAGTG	2 cut(s)	648, 699
BtuMI	TCGCGA	1 cut(s)	285
BveI	ACCTGC	1 cut(s)	421
CfoI	GCGC	1 cut(s)	372
Cfr13I	GGNCC	6 cut(s)	67, 172, 348, 445, 628, 697
Cfr42I	CCGCGG	1 cut(s)	379
CsiI	ACCWGGT	1 cut(s)	717
CviAII	CATG	4 cut(s)	258, 478, 514, 581
DdeI	CTNAG	4 cut(s)	63, 78, 156, 691
EaeI	YGGCCR	1 cut(s)	273
EagI	CGGCCG	1 cut(s)	273
Eam1104I	CTCTTC	2 cut(s)	121, 209
EarI	CTCTTC	2 cut(s)	121, 209
EclXI	CGGCCG	1 cut(s)	273
Eco130I	CCWWGG	2 cut(s)	103, 257
Eco47I	GGWCC	2 cut(s)	172, 697
Eco52I	CGGCCG	1 cut(s)	273
Eco88I	CYCGRG	4 cut(s)	332, 345, 485, 607
Eco91I	GGTNACC	1 cut(s)	575
EcoO109I	RGGNCCY	1 cut(s)	67
EcoO65I	GGTNACC	1 cut(s)	575
EcoRII	CCWGG	5 cut(s)	132, 365, 624, 630, 717
EcoT14I	CCWWGG	2 cut(s)	103, 257
ErhI	CCWWGG	2 cut(s)	103, 257
FaeI	CATG	4 cut(s)	261, 481, 517, 584
FaiI	YATR	7 cut(s)	259, 354, 479, 506, 515, 582, 662
FalI	AAGNNNNNCTT	2 cut(s)	383, 415
FatI	CATG	4 cut(s)	257, 477, 513, 580
FauI	CCCGC	1 cut(s)	297
FblI	GTMKAC	1 cut(s)	491
Fnu4HI	GCNGC	6 cut(s)	273, 342, 363, 379, 570, 737
FokI	GGATG	4 cut(s)	359, 647, 718, 725
Fsp4HI	GCNGC	6 cut(s)	273, 342, 363, 379, 570, 737
GlaI	GCGC	1 cut(s)	371
GluI	GCNGC	6 cut(s)	273, 342, 363, 379, 570, 737
GsaI	CCCAGC	1 cut(s)	451
GsuI	CTGGAG	1 cut(s)	437
HaeIII	GGCC	8 cut(s)	38, 69, 256, 275, 350, 389, 446, 630
HapII	CCGG	4 cut(s)	419, 431, 437, 686
HhaI	GCGC	1 cut(s)	372
Hin1II	CATG	4 cut(s)	261, 481, 517, 584
Hin6I	GCGC	1 cut(s)	370
HinP1I	GCGC	1 cut(s)	370
HincII	GTYRAC	1 cut(s)	492
HindII	GTYRAC	1 cut(s)	492
HinfI	GANTC	8 cut(s)	113, 280, 306, 488, 617, 638, 675, 689
HpaII	CCGG	4 cut(s)	419, 431, 437, 686
HphI	GGTGA	5 cut(s)	22, 178, 569, 692, 722
Hpy166II	GTNNAC	4 cut(s)	172, 492, 668, 697
Hpy188I	TCNGA	5 cut(s)	25, 79, 97, 159, 317
Hpy188III	TCNNGA	5 cut(s)	284, 485, 538, 607, 746
Hpy8I	GTNNAC	4 cut(s)	172, 492, 668, 697
Hpy99I	CGWCG	1 cut(s)	652
HpyAV	CCTTC	3 cut(s)	154, 331, 540
HpyCH4III	ACNGT	1 cut(s)	554
HpyCH4V	TGCA	3 cut(s)	197, 477, 497
HpyF10VI	GCNNNNNNNGC	5 cut(s)	129, 161, 347, 378, 598
HpyF3I	CTNAG	4 cut(s)	63, 78, 156, 691
Hsp92II	CATG	4 cut(s)	261, 481, 517, 584
HspAI	GCGC	1 cut(s)	370
KspI	CCGCGG	1 cut(s)	379
LmnI	GCTCC	4 cut(s)	433, 439, 456, 517
Lsp1109I	GCAGC	3 cut(s)	328, 556, 748
LweI	GCATC	3 cut(s)	381, 696, 760
MabI	ACCWGGT	1 cut(s)	717
MaeIII	GTNAC	3 cut(s)	184, 575, 721
MboII	GAAGA	5 cut(s)	108, 212, 220, 226, 238
MlyI	GAGTC	6 cut(s)	107, 315, 497, 626, 647, 683
MmeI	TCCRAC	1 cut(s)	48
MroXI	GAANNNNTTC	1 cut(s)	545
MslI	CAYNNNNRTG	1 cut(s)	585
MspA1I	CMGCKG	2 cut(s)	62, 378
MspI	CCGG	4 cut(s)	419, 431, 437, 686
MspR9I	CCNGG	6 cut(s)	134, 367, 419, 626, 632, 719
MvaI	CCWGG	5 cut(s)	134, 367, 626, 632, 719
MvnI	CGCG	2 cut(s)	285, 378
MwoI	GCNNNNNNNGC	5 cut(s)	129, 161, 347, 378, 598
NciI	CCSGG	1 cut(s)	419
NcoI	CCATGG	1 cut(s)	257
NlaIII	CATG	4 cut(s)	261, 481, 517, 584
NlaIV	GGNNCC	6 cut(s)	138, 174, 319, 423, 435, 519
NmeAIII	GCCGAG	1 cut(s)	301
NmuCI	GTSAC	2 cut(s)	184, 575
NruI	TCGCGA	1 cut(s)	285
PaeR7I	CTCGAG	2 cut(s)	485, 607
PdmI	GAANNNNTTC	1 cut(s)	545
PfeI	GAWTC	2 cut(s)	280, 675
PkrI	GCNGC	6 cut(s)	274, 343, 364, 380, 571, 738
PleI	GAGTC	6 cut(s)	107, 314, 496, 625, 646, 683
PpsI	GAGTC	6 cut(s)	107, 314, 496, 625, 646, 683
Psp6I	CCWGG	5 cut(s)	132, 365, 624, 630, 717
PspEI	GGTNACC	1 cut(s)	575
PspFI	CCCAGC	1 cut(s)	447
PspGI	CCWGG	5 cut(s)	132, 365, 624, 630, 717
PspN4I	GGNNCC	6 cut(s)	138, 174, 319, 423, 435, 519
PspPI	GGNCC	6 cut(s)	67, 172, 348, 445, 628, 697
RruI	TCGCGA	1 cut(s)	285
RseI	CAYNNNNRTG	1 cut(s)	585
SacII	CCGCGG	1 cut(s)	379
SalI	GTCGAC	1 cut(s)	490
SatI	GCNGC	6 cut(s)	273, 342, 363, 379, 570, 737
Sau96I	GGNCC	6 cut(s)	67, 172, 348, 445, 628, 697
SchI	GAGTC	6 cut(s)	107, 315, 497, 626, 647, 683
ScrFI	CCNGG	6 cut(s)	134, 367, 419, 626, 632, 719
SexAI	ACCWGGT	1 cut(s)	717
SfaNI	GCATC	3 cut(s)	381, 696, 760
SfcI	CTRYAG	1 cut(s)	235
Sfr274I	CTCGAG	2 cut(s)	485, 607
Sfr303I	CCGCGG	1 cut(s)	379
SgrBI	CCGCGG	1 cut(s)	379
SinI	GGWCC	2 cut(s)	172, 697
SlaI	CTCGAG	2 cut(s)	485, 607
SmiMI	CAYNNNNRTG	1 cut(s)	585
SmlI	CTYRAG	2 cut(s)	485, 607
SmoI	CTYRAG	2 cut(s)	485, 607
SsiI	CCGC	9 cut(s)	60, 130, 140, 272, 290, 363, 376, 378, 472
StyD4I	CCNGG	6 cut(s)	132, 365, 417, 624, 630, 717
StyI	CCWWGG	2 cut(s)	103, 257
TaaI	ACNGT	1 cut(s)	554
TaqI	TCGA	4 cut(s)	486, 491, 608, 650
TauI	GCSGC	3 cut(s)	275, 365, 381
TfiI	GAWTC	2 cut(s)	280, 675
TscAI	CASTG	2 cut(s)	648, 699
TseFI	GTSAC	2 cut(s)	184, 575
TseI	GCWGC	3 cut(s)	341, 569, 736
Tsp45I	GTSAC	2 cut(s)	184, 575
TspDTI	ATGAA	2 cut(s)	372, 522
TspRI	CASTG	2 cut(s)	648, 699
VpaK11BI	GGWCC	2 cut(s)	172, 697
XcmI	CCANNNNNNNNNTGG	1 cut(s)	264
XhoI	CTCGAG	2 cut(s)	485, 607
XmiI	GTMKAC	1 cut(s)	491
XmnI	GAANNNNTTC	1 cut(s)	545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.