Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0011185

Physical Location & Seq

Genomic Coordinates Forward (+)

22608044 .. 22609917

Gene Structure 1874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g18780.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGTGTGGAGGTGCTATCATTTCCGACTTCATCGAGGCCAAGCGTAGCCGGAAGCTCACCGCCGAGGACCTCTGGTCTGAGCTTGACACCATCTCTGACCTCCTTGGCTTGGACTACTCTTCCACCAACAACGCCCAGCTCCTTCACCACAAGCTTGCTCAGAAGCCAAAGGTTGACCCGATTGCAGTCACCAAAGTTGCAGTGCCGACTGAGATCAAGGAGAAGAAGAAGACGACTATCGGAATTGCAGAGAAGGAAGCAGATGGGAAGACGAAGAGGGTGAGGAAAAACAAGTACAGAGGAATAAGGCAGAGGCCATGGGGCAAATGGGCAGCAGAGATTCGCGACCCACACCAAGGCATCCGAGTCTGGCTCGGAACCTTCAACACACCCGAGGAAGCCGCTCTCGCCTACGACCAAGCTGCCAAGCGCATCCGCGGCAACAAGGCCAAGCTCAACTTCCCTGCTACTCCGGCTCCGGCTCCGGCTCCGGCACGGCTTCAACCACCGTCCAAGAAGCGGTGCATGGCTCCCGAGTCAACTCAGTCGAGCGCACTAGCCATGATGGGCATGGGGCCTTACTATCCGCCATTCCAGAATGAGTGCTACTCTAAGAGTGAGACTACGGCTGATCACGACCATGAGTATGAGCTGAAAGAGCAAATCTCGAGCTTGGAGAAGATCCTGGGCCTGGATGAGCCGGTGACGCCGAATGAGGTGACGAGTGGACTCGGAATGGGGGAACCGGAGTCGTCGGACCTGTGGATGCTGGATGACCTGGTCACACATCACCAGCAGCAAGGCTATGATCATCAGCTCGTATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009753 GO:0009755 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010286 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032870 GO:0035556 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071944 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

276

Amino Acids

30.71

Weight (kDa)

7.09

Isoelectric Point (pI)

49.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	98 - 148	2.3e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16770
fragaria_vesca	FvH4_4g18780
malus_domestica	MD13G1163300.v1.1 MD16G1162800.v1.1 MD16G1162900.v1.1
prunus_persica	Prupe.1G130300_v2.0.a1 Prupe.1G130300_v2.0.a1
pyrus_communis	pycom13g13920 pycom16g13800
rosa_chinensis	RchiOBHm_Chr4g0423581
rosa_laevigata	RLG00000007545
rosa_multiflora	Rmu_sc0000464.1_g000024 Rmu_sc0004342.1_g000003
rosa_roxburghii	Rroxscaffold_5G00365800
rosa_rugosa	Rorug04G0188800
rosa_samantha	Rh4AG248300 Rh4BG253500 Rh4CG261600 Rh4DG248800
rosa_wichuraiana	Rw4G021270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	404
AccII	CGCG	2 cut(s)	345, 438
AciI	CCGC	6 cut(s)	60, 402, 436, 438, 520, 587
AclWI	GGATC	1 cut(s)	676
AcyI	GRCGYC	1 cut(s)	707
AfaI	GTAC	1 cut(s)	296
AfiI	CCNNNNNNNGG	4 cut(s)	109, 356, 519, 691
AgsI	TTSAA	2 cut(s)	385, 503
AhdI	GACNNNNNGTC	1 cut(s)	73
AjnI	CCWGG	3 cut(s)	684, 690, 777
AjuI	GAANNNNNNNTTGG	2 cut(s)	443, 475
AluBI	AGCT	9 cut(s)	55, 82, 139, 154, 422, 454, 652, 672, 817
AluI	AGCT	9 cut(s)	55, 82, 139, 154, 422, 454, 652, 672, 817
Alw26I	GTCTC	1 cut(s)	614
AlwI	GGATC	1 cut(s)	676
Ama87I	CYCGRG	3 cut(s)	392, 533, 667
AoxI	GGCC	5 cut(s)	36, 314, 447, 575, 688
ApeKI	GCWGC	3 cut(s)	332, 422, 796
AspLEI	GCGC	2 cut(s)	432, 554
AspS9I	GGNCC	4 cut(s)	67, 575, 688, 757
AsuHPI	GGTGA	7 cut(s)	49, 137, 181, 292, 715, 730, 782
AvaI	CYCGRG	3 cut(s)	392, 533, 667
AvaII	GGWCC	2 cut(s)	67, 757
BbsI	GAAGAC	2 cut(s)	236, 275
BbvI	GCAGC	3 cut(s)	344, 409, 808
BccI	CCATC	3 cut(s)	98, 257, 559
BceAI	ACGGC	2 cut(s)	512, 642
BcgI	CGANNNNNNTGC	2 cut(s)	404, 438
BciT130I	CCWGG	3 cut(s)	686, 692, 779
BclI	TGATCA	2 cut(s)	631, 808
BcoDI	GTCTC	1 cut(s)	614
BfaI	CTAG	1 cut(s)	557
BisI	GCNGC	5 cut(s)	333, 402, 423, 439, 797
BlsI	GCNGC	5 cut(s)	334, 403, 424, 440, 798
Bme1390I	CCNGG	3 cut(s)	686, 692, 779
Bme18I	GGWCC	2 cut(s)	67, 757
BmeRI	GACNNNNNGTC	1 cut(s)	73
BmeT110I	CYCGRG	3 cut(s)	392, 533, 667
BmgT120I	GGNCC	4 cut(s)	67, 575, 688, 757
BmiI	GGNNCC	7 cut(s)	379, 477, 483, 489, 531, 576, 744
BmrFI	CCNGG	3 cut(s)	686, 692, 779
BmsI	GCATC	3 cut(s)	369, 441, 756
BpiI	GAAGAC	2 cut(s)	236, 275
BplI	GAGNNNNNCTC	6 cut(s)	357, 389, 593, 625, 650, 682
BsaHI	GRCGYC	1 cut(s)	707
BsaJI	CCNNGG	7 cut(s)	63, 103, 317, 355, 393, 436, 685
BsaWI	WCCGGW	1 cut(s)	745
BsaXI	ACNNNNNCTCC	2 cut(s)	460, 490
Bsc4I	CCNNNNNNNGG	4 cut(s)	109, 356, 519, 691
Bse118I	RCCGGY	1 cut(s)	700
BseBI	CCWGG	3 cut(s)	686, 692, 779
BseDI	CCNNGG	7 cut(s)	63, 103, 317, 355, 393, 436, 685
BseGI	GGATG	5 cut(s)	360, 432, 700, 771, 778
BseLI	CCNNNNNNNGG	4 cut(s)	109, 356, 519, 691
BseMII	CTCAG	4 cut(s)	69, 173, 201, 557
BseXI	GCAGC	3 cut(s)	344, 409, 808
BseYI	CCCAGC	1 cut(s)	135
Bsh1236I	CGCG	2 cut(s)	345, 438
BshFI	GGCC	5 cut(s)	38, 316, 449, 577, 690
BsiHKCI	CYCGRG	3 cut(s)	392, 533, 667
BsiSI	CCGG	7 cut(s)	49, 473, 479, 485, 491, 701, 746
BslI	CCNNNNNNNGG	4 cut(s)	109, 356, 519, 691
BsmAI	GTCTC	1 cut(s)	614
BsnI	GGCC	5 cut(s)	38, 316, 449, 577, 690
BsoBI	CYCGRG	3 cut(s)	392, 533, 667
Bsp143I	GATC	4 cut(s)	213, 631, 681, 808
Bsp19I	CCATGG	1 cut(s)	317
Bsp68I	TCGCGA	1 cut(s)	345
BspACI	CCGC	6 cut(s)	60, 402, 436, 438, 520, 587
BspANI	GGCC	5 cut(s)	38, 316, 449, 577, 690
BspCNI	CTCAG	4 cut(s)	70, 172, 202, 556
BspFNI	CGCG	2 cut(s)	345, 438
BspLI	GGNNCC	7 cut(s)	379, 477, 483, 489, 531, 576, 744
BspPI	GGATC	1 cut(s)	676
BsrBI	CCGCTC	1 cut(s)	404
BsrFI	RCCGGY	1 cut(s)	700
BssAI	RCCGGY	1 cut(s)	700
BssECI	CCNNGG	7 cut(s)	63, 103, 317, 355, 393, 436, 685
BssMI	GATC	4 cut(s)	213, 631, 681, 808
BssNI	GRCGYC	1 cut(s)	707
BssT1I	CCWWGG	3 cut(s)	103, 317, 355
Bst2UI	CCWGG	3 cut(s)	686, 692, 779
Bst4CI	ACNGT	1 cut(s)	510
Bst6I	CTCTTC	2 cut(s)	124, 269
BstACI	GRCGYC	1 cut(s)	707
BstC8I	GCNNGC	1 cut(s)	156
BstDEI	CTNAG	5 cut(s)	78, 159, 210, 543, 612
BstDSI	CCRYGG	2 cut(s)	317, 436
BstF5I	GGATG	5 cut(s)	360, 432, 700, 771, 778
BstFNI	CGCG	2 cut(s)	345, 438
BstHHI	GCGC	2 cut(s)	432, 554
BstKTI	GATC	4 cut(s)	216, 634, 684, 811
BstMAI	GTCTC	1 cut(s)	614
BstMBI	GATC	4 cut(s)	213, 631, 681, 808
BstMWI	GCNNNNNNNGC	5 cut(s)	407, 438, 473, 658, 706
BstNI	CCWGG	3 cut(s)	686, 692, 779
BstSCI	CCNGG	3 cut(s)	684, 690, 777
BstUI	CGCG	2 cut(s)	345, 438
BstV1I	GCAGC	3 cut(s)	344, 409, 808
BstV2I	GAAGAC	2 cut(s)	236, 275
BstX2I	RGATCY	1 cut(s)	681
BstYI	RGATCY	1 cut(s)	681
BsuRI	GGCC	5 cut(s)	38, 316, 449, 577, 690
BtgI	CCRYGG	2 cut(s)	317, 436
BtsCI	GGATG	5 cut(s)	360, 432, 700, 771, 778
BtsI	GCAGTG	1 cut(s)	207
BtsIMutI	CAGTG	1 cut(s)	207
BtuMI	TCGCGA	1 cut(s)	345
Cac8I	GCNNGC	1 cut(s)	156
CfoI	GCGC	2 cut(s)	432, 554
Cfr10I	RCCGGY	1 cut(s)	700
Cfr13I	GGNCC	4 cut(s)	67, 575, 688, 757
Cfr42I	CCGCGG	1 cut(s)	439
CseI	GACGC	1 cut(s)	715
CsiI	ACCWGGT	1 cut(s)	777
Csp6I	GTAC	1 cut(s)	295
CviAII	CATG	5 cut(s)	318, 526, 562, 571, 641
CviQI	GTAC	1 cut(s)	295
DdeI	CTNAG	5 cut(s)	78, 159, 210, 543, 612
DpnI	GATC	4 cut(s)	215, 633, 683, 810
DpnII	GATC	4 cut(s)	213, 631, 681, 808
DriI	GACNNNNNGTC	1 cut(s)	73
Eam1104I	CTCTTC	2 cut(s)	124, 269
Eam1105I	GACNNNNNGTC	1 cut(s)	73
EarI	CTCTTC	2 cut(s)	124, 269
EciI	GGCGGA	1 cut(s)	576
Eco130I	CCWWGG	3 cut(s)	103, 317, 355
Eco47I	GGWCC	2 cut(s)	67, 757
Eco88I	CYCGRG	3 cut(s)	392, 533, 667
EcoO109I	RGGNCCY	2 cut(s)	67, 575
EcoRII	CCWGG	3 cut(s)	684, 690, 777
EcoT14I	CCWWGG	3 cut(s)	103, 317, 355
ErhI	CCWWGG	3 cut(s)	103, 317, 355
FaeI	CATG	5 cut(s)	321, 529, 565, 574, 644
FaiI	YATR	8 cut(s)	319, 527, 563, 572, 642, 648, 807, 823
FalI	AAGNNNNNCTT	2 cut(s)	443, 475
FatI	CATG	5 cut(s)	317, 525, 561, 570, 640
FbaI	TGATCA	2 cut(s)	631, 808
Fnu4HI	GCNGC	5 cut(s)	333, 402, 423, 439, 797
FokI	GGATG	5 cut(s)	347, 419, 707, 778, 785
Fsp4HI	GCNGC	5 cut(s)	333, 402, 423, 439, 797
FspBI	CTAG	1 cut(s)	557
GlaI	GCGC	2 cut(s)	431, 553
GluI	GCNGC	5 cut(s)	333, 402, 423, 439, 797
GsaI	CCCAGC	1 cut(s)	139
HaeIII	GGCC	5 cut(s)	38, 316, 449, 577, 690
HapII	CCGG	7 cut(s)	49, 473, 479, 485, 491, 701, 746
HgaI	GACGC	1 cut(s)	715
HhaI	GCGC	2 cut(s)	432, 554
Hin1I	GRCGYC	1 cut(s)	707
Hin1II	CATG	5 cut(s)	321, 529, 565, 574, 644
Hin6I	GCGC	2 cut(s)	430, 552
HinP1I	GCGC	2 cut(s)	430, 552
HincII	GTYRAC	2 cut(s)	175, 540
HindII	GTYRAC	2 cut(s)	175, 540
HindIII	AAGCTT	1 cut(s)	152
HinfI	GANTC	5 cut(s)	340, 366, 536, 729, 749
HpaII	CCGG	7 cut(s)	49, 473, 479, 485, 491, 701, 746
HphI	GGTGA	7 cut(s)	49, 137, 181, 292, 715, 730, 782
Hpy166II	GTNNAC	3 cut(s)	175, 540, 728
Hpy188I	TCNGA	9 cut(s)	25, 79, 97, 162, 242, 365, 377, 734, 757
Hpy188III	TCNNGA	5 cut(s)	344, 533, 595, 635, 667
Hpy8I	GTNNAC	3 cut(s)	175, 540, 728
Hpy99I	CGWCG	1 cut(s)	757
HpyAV	CCTTC	3 cut(s)	152, 247, 391
HpyCH4III	ACNGT	1 cut(s)	510
HpyCH4V	TGCA	4 cut(s)	185, 200, 248, 525
HpyF10VI	GCNNNNNNNGC	5 cut(s)	407, 438, 473, 658, 706
HpyF3I	CTNAG	5 cut(s)	78, 159, 210, 543, 612
Hsp92I	GRCGYC	1 cut(s)	707
Hsp92II	CATG	5 cut(s)	321, 529, 565, 574, 644
HspAI	GCGC	2 cut(s)	430, 552
Ksp22I	TGATCA	2 cut(s)	631, 808
KspI	CCGCGG	1 cut(s)	439
Kzo9I	GATC	4 cut(s)	213, 631, 681, 808
LmnI	GCTCC	5 cut(s)	144, 481, 487, 493, 535
Lsp1109I	GCAGC	3 cut(s)	344, 409, 808
LweI	GCATC	3 cut(s)	369, 441, 756
MabI	ACCWGGT	1 cut(s)	777
MaeI	CTAG	1 cut(s)	557
MaeIII	GTNAC	4 cut(s)	187, 703, 718, 781
MalI	GATC	4 cut(s)	215, 633, 683, 810
MbiI	CCGCTC	1 cut(s)	404
MboI	GATC	4 cut(s)	213, 631, 681, 808
MboII	GAAGA	7 cut(s)	111, 235, 238, 241, 280, 286, 691
MflI	RGATCY	1 cut(s)	681
MluCI	AATT	1 cut(s)	243
MlyI	GAGTC	4 cut(s)	375, 545, 723, 758
MmeI	TCCRAC	2 cut(s)	48, 735
MslI	CAYNNNNRTG	2 cut(s)	639, 645
MspA1I	CMGCKG	1 cut(s)	438
MspI	CCGG	7 cut(s)	49, 473, 479, 485, 491, 701, 746
MspR9I	CCNGG	3 cut(s)	686, 692, 779
MvaI	CCWGG	3 cut(s)	686, 692, 779
MvnI	CGCG	2 cut(s)	345, 438
MwoI	GCNNNNNNNGC	5 cut(s)	407, 438, 473, 658, 706
NcoI	CCATGG	1 cut(s)	317
NdeII	GATC	4 cut(s)	213, 631, 681, 808
NlaIII	CATG	5 cut(s)	321, 529, 565, 574, 644
NlaIV	GGNNCC	7 cut(s)	379, 477, 483, 489, 531, 576, 744
NmeAIII	GCCGAG	1 cut(s)	88
NmuCI	GTSAC	4 cut(s)	187, 703, 718, 781
NruI	TCGCGA	1 cut(s)	345
PaeR7I	CTCGAG	1 cut(s)	667
PfeI	GAWTC	1 cut(s)	340
PflFI	GACNNNGTC	1 cut(s)	779
PkrI	GCNGC	5 cut(s)	334, 403, 424, 440, 798
PleI	GAGTC	4 cut(s)	374, 544, 723, 757
PpsI	GAGTC	4 cut(s)	374, 544, 723, 757
PpuMI	RGGWCCY	1 cut(s)	67
Psp5II	RGGWCCY	1 cut(s)	67
Psp6I	CCWGG	3 cut(s)	684, 690, 777
PspFI	CCCAGC	1 cut(s)	135
PspGI	CCWGG	3 cut(s)	684, 690, 777
PspN4I	GGNNCC	7 cut(s)	379, 477, 483, 489, 531, 576, 744
PspPI	GGNCC	4 cut(s)	67, 575, 688, 757
PspPPI	RGGWCCY	1 cut(s)	67
PsuI	RGATCY	1 cut(s)	681
PsyI	GACNNNGTC	1 cut(s)	779
RruI	TCGCGA	1 cut(s)	345
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
RseI	CAYNNNNRTG	2 cut(s)	639, 645
SacII	CCGCGG	1 cut(s)	439
SatI	GCNGC	5 cut(s)	333, 402, 423, 439, 797
Sau3AI	GATC	4 cut(s)	213, 631, 681, 808
Sau96I	GGNCC	4 cut(s)	67, 575, 688, 757
SchI	GAGTC	4 cut(s)	375, 545, 723, 758
ScrFI	CCNGG	3 cut(s)	686, 692, 779
SexAI	ACCWGGT	1 cut(s)	777
SfaNI	GCATC	3 cut(s)	369, 441, 756
Sfr274I	CTCGAG	1 cut(s)	667
Sfr303I	CCGCGG	1 cut(s)	439
SgrBI	CCGCGG	1 cut(s)	439
SinI	GGWCC	2 cut(s)	67, 757
SlaI	CTCGAG	1 cut(s)	667
SmiMI	CAYNNNNRTG	2 cut(s)	639, 645
SmlI	CTYRAG	1 cut(s)	667
SmoI	CTYRAG	1 cut(s)	667
Sse9I	AATT	1 cut(s)	243
SsiI	CCGC	6 cut(s)	60, 402, 436, 438, 520, 587
SspMI	CTAG	1 cut(s)	557
StyD4I	CCNGG	3 cut(s)	684, 690, 777
StyI	CCWWGG	3 cut(s)	103, 317, 355
TaaI	ACNGT	1 cut(s)	510
TaqI	TCGA	3 cut(s)	33, 548, 668
TasI	AATT	1 cut(s)	243
TatI	WGTACW	1 cut(s)	294
TauI	GCSGC	2 cut(s)	404, 441
TfiI	GAWTC	1 cut(s)	340
TscAI	CASTG	1 cut(s)	207
TseFI	GTSAC	4 cut(s)	187, 703, 718, 781
TseI	GCWGC	3 cut(s)	332, 422, 796
Tsp45I	GTSAC	4 cut(s)	187, 703, 718, 781
TspDTI	ATGAA	1 cut(s)	19
TspRI	CASTG	1 cut(s)	207
Tth111I	GACNNNGTC	1 cut(s)	779
VpaK11BI	GGWCC	2 cut(s)	67, 757
XcmI	CCANNNNNNNNNTGG	2 cut(s)	324, 568
XhoI	CTCGAG	1 cut(s)	667
XspI	CTAG	1 cut(s)	557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.