Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0011185

Physical Location & Seq

Genomic Coordinates Forward (+)

42486438 .. 42488341

Gene Structure 1904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG253500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGTGTGGAGGTGCTATCATTTCCGACTTCACCGAGGCCAAGCGTGGCTGGAAGCTGACCGCTGAGGGCCTCTCGTCTGAGCTTGACACCATCTCTGACCTCCTTGGCTTGGACTCTTCCAACAACAACCGCCAGGTTCTGCACCACAAGCTCTCTCAGAAGGCAAAGGTGGACCCAAATCCAGTCACCAAAGTTGCAGTGTCGAGTGAAATTAAGGAGAAGAAGACAAGTATAGGAGTTGCAGAGGATGGGAAGACGAAGAGAGTGAGGAAGAACATCTACAGAGGAATAAGGCAGAGGCCATGGGGCAAATGGGCGGCCGAGATTCGCGACCCGCACAAAGGCGTAAGAGTCTGGCTCGGAACCTTCAACACACCCGAGGAAGCTGCTCGGGCCTATGATGAAGCCGCCAAGCGCATCCGCGGCGACAAGGCCAAGCTCAACTTCCCTCCACAACCTGCCCCGGTTCCTGCTCCGGCTCCGGCTTCGGCCCAGCTCCAGCCACCCTCCAAGAAGCGGTGCATGGCTCTCGAGTCGACTGCATCAGCTATGATGGGTATGGAGCCTTACTATCCTTCATTCCAGAATGAGTTCTACTATAAGAGTGAGACTGCTGCTGATCACCATGAGTGTGAGCTGAAAGAGCAAATCTCGAGCTTGGAGTCTTTCCTGGGCCTGGATGAGTCAGTGTCGTCGAATGAGGTGATGAGTGGACTCGGAATCGGTGAGCCGGACTCAGTGGACCTGTGGATGCTGGATGACCTGGTTACACAACACCAGCAGCACGGTCGTGAGCATCAGCTCGTGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009753 GO:0009755 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010286 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032870 GO:0035556 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071944 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

270

Amino Acids

30.0

Weight (kDa)

6.46

Isoelectric Point (pI)

50.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	94 - 142	5.9e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16770
fragaria_vesca	FvH4_4g18780
malus_domestica	MD13G1163300.v1.1 MD16G1162800.v1.1 MD16G1162900.v1.1
prunus_persica	Prupe.1G130300_v2.0.a1 Prupe.1G130300_v2.0.a1
pyrus_communis	pycom13g13920 pycom16g13800
rosa_chinensis	RchiOBHm_Chr4g0423581
rosa_laevigata	RLG00000007545
rosa_multiflora	Rmu_sc0000464.1_g000024 Rmu_sc0004342.1_g000003
rosa_roxburghii	Rroxscaffold_5G00365800
rosa_rugosa	Rorug04G0188800
rosa_samantha	Rh4AG248300 Rh4BG253500 Rh4CG261600 Rh4DG248800
rosa_wichuraiana	Rw4G021270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	466
AccI	GTMKAC	1 cut(s)	536
AccII	CGCG	2 cut(s)	330, 423
AciI	CCGC	8 cut(s)	60, 130, 317, 335, 408, 421, 423, 517
AcoI	YGGCCR	1 cut(s)	318
AfiI	CCNNNNNNNGG	4 cut(s)	109, 341, 516, 676
AgsI	TTSAA	1 cut(s)	370
AjnI	CCWGG	4 cut(s)	132, 669, 675, 762
AjuI	GAANNNNNNNTTGG	2 cut(s)	428, 460
AleI	CACNNNNGTG	1 cut(s)	789
Alw26I	GTCTC	1 cut(s)	602
AlwNI	CAGNNNCTG	1 cut(s)	139
Ama87I	CYCGRG	4 cut(s)	377, 390, 530, 652
AoxI	GGCC	8 cut(s)	36, 67, 299, 318, 393, 432, 489, 673
ApeKI	GCWGC	3 cut(s)	386, 614, 781
Asp700I	GAANNNNTTC	1 cut(s)	590
AspLEI	GCGC	1 cut(s)	417
AspS9I	GGNCC	6 cut(s)	67, 172, 393, 490, 673, 742
AsuC2I	CCSGG	1 cut(s)	464
AsuHPI	GGTGA	5 cut(s)	22, 178, 614, 715, 737
AvaI	CYCGRG	4 cut(s)	377, 390, 530, 652
AvaII	GGWCC	2 cut(s)	172, 742
BarI	GAAGNNNNNNTAC	2 cut(s)	263, 295
BauI	CACGAG	1 cut(s)	803
BbsI	GAAGAC	2 cut(s)	230, 260
BbvCI	CCTCAGC	1 cut(s)	63
BbvI	GCAGC	3 cut(s)	373, 601, 793
BccI	CCATC	3 cut(s)	98, 242, 547
BcgI	CGANNNNNNTGC	8 cut(s)	368, 402, 511, 521, 545, 555, 770, 804
BciT130I	CCWGG	4 cut(s)	134, 671, 677, 764
BclI	TGATCA	1 cut(s)	619
BcnI	CCSGG	1 cut(s)	464
BcoDI	GTCTC	1 cut(s)	602
BfmI	CTRYAG	1 cut(s)	280
BfuAI	ACCTGC	1 cut(s)	466
BisI	GCNGC	6 cut(s)	318, 387, 408, 424, 615, 782
BlsI	GCNGC	6 cut(s)	319, 388, 409, 425, 616, 783
Bme1390I	CCNGG	5 cut(s)	134, 464, 671, 677, 764
Bme18I	GGWCC	2 cut(s)	172, 742
BmeT110I	CYCGRG	4 cut(s)	377, 390, 530, 652
BmgT120I	GGNCC	6 cut(s)	67, 172, 393, 490, 673, 742
BmiI	GGNNCC	5 cut(s)	174, 364, 468, 480, 564
BmrFI	CCNGG	5 cut(s)	134, 464, 671, 677, 764
BmsI	GCATC	4 cut(s)	426, 551, 741, 805
BpiI	GAAGAC	2 cut(s)	230, 260
BplI	GAGNNNNNCTC	8 cut(s)	56, 88, 342, 374, 635, 667, 719, 751
BpmI	CTGGAG	1 cut(s)	482
Bpu10I	CCTNAGC	1 cut(s)	63
BpuMI	CCSGG	1 cut(s)	464
BsaJI	CCNNGG	7 cut(s)	33, 103, 302, 378, 421, 462, 670
Bsc4I	CCNNNNNNNGG	4 cut(s)	109, 341, 516, 676
Bse1I	ACTGG	1 cut(s)	182
BseBI	CCWGG	4 cut(s)	134, 671, 677, 764
BseDI	CCNNGG	7 cut(s)	33, 103, 302, 378, 421, 462, 670
BseGI	GGATG	5 cut(s)	253, 417, 685, 756, 763
BseLI	CCNNNNNNNGG	4 cut(s)	109, 341, 516, 676
BseMII	CTCAG	4 cut(s)	54, 69, 170, 750
BseNI	ACTGG	1 cut(s)	182
BseX3I	CGGCCG	1 cut(s)	318
BseXI	GCAGC	3 cut(s)	373, 601, 793
BseYI	CCCAGC	1 cut(s)	492
BsgI	GTGCAG	1 cut(s)	125
Bsh1236I	CGCG	2 cut(s)	330, 423
Bsh1285I	CGRYCG	2 cut(s)	321, 790
BshFI	GGCC	8 cut(s)	38, 69, 301, 320, 395, 434, 491, 675
BsiEI	CGRYCG	2 cut(s)	321, 790
BsiHKCI	CYCGRG	4 cut(s)	377, 390, 530, 652
BsiSI	CCGG	4 cut(s)	464, 476, 482, 731
BslI	CCNNNNNNNGG	4 cut(s)	109, 341, 516, 676
BsmAI	GTCTC	1 cut(s)	602
BsnI	GGCC	8 cut(s)	38, 69, 301, 320, 395, 434, 491, 675
BsoBI	CYCGRG	4 cut(s)	377, 390, 530, 652
Bsp143I	GATC	1 cut(s)	619
Bsp19I	CCATGG	1 cut(s)	302
Bsp68I	TCGCGA	1 cut(s)	330
BspACI	CCGC	8 cut(s)	60, 130, 317, 335, 408, 421, 423, 517
BspANI	GGCC	8 cut(s)	38, 69, 301, 320, 395, 434, 491, 675
BspCNI	CTCAG	4 cut(s)	55, 70, 169, 749
BspFNI	CGCG	2 cut(s)	330, 423
BspLI	GGNNCC	5 cut(s)	174, 364, 468, 480, 564
BspMI	ACCTGC	1 cut(s)	466
BsrI	ACTGG	1 cut(s)	182
BssECI	CCNNGG	7 cut(s)	33, 103, 302, 378, 421, 462, 670
BssMI	GATC	1 cut(s)	619
BssSI	CACGAG	1 cut(s)	803
BssT1I	CCWWGG	2 cut(s)	103, 302
Bst2BI	CACGAG	1 cut(s)	803
Bst2UI	CCWGG	4 cut(s)	134, 671, 677, 764
Bst4CI	ACNGT	1 cut(s)	788
Bst6I	CTCTTC	2 cut(s)	121, 254
BstDEI	CTNAG	4 cut(s)	63, 78, 156, 736
BstDSI	CCRYGG	2 cut(s)	302, 421
BstF5I	GGATG	5 cut(s)	253, 417, 685, 756, 763
BstFNI	CGCG	2 cut(s)	330, 423
BstHHI	GCGC	1 cut(s)	417
BstKTI	GATC	1 cut(s)	622
BstMAI	GTCTC	1 cut(s)	602
BstMBI	GATC	1 cut(s)	619
BstMCI	CGRYCG	2 cut(s)	321, 790
BstMWI	GCNNNNNNNGC	4 cut(s)	148, 392, 423, 643
BstNI	CCWGG	4 cut(s)	134, 671, 677, 764
BstSCI	CCNGG	5 cut(s)	132, 462, 669, 675, 762
BstSFI	CTRYAG	1 cut(s)	280
BstUI	CGCG	2 cut(s)	330, 423
BstV1I	GCAGC	3 cut(s)	373, 601, 793
BstV2I	GAAGAC	2 cut(s)	230, 260
BstZI	CGGCCG	1 cut(s)	318
BsuRI	GGCC	8 cut(s)	38, 69, 301, 320, 395, 434, 491, 675
BtgI	CCRYGG	2 cut(s)	302, 421
BtsCI	GGATG	5 cut(s)	253, 417, 685, 756, 763
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	3 cut(s)	204, 693, 744
BtuMI	TCGCGA	1 cut(s)	330
BveI	ACCTGC	1 cut(s)	466
CaiI	CAGNNNCTG	1 cut(s)	139
CfoI	GCGC	1 cut(s)	417
Cfr13I	GGNCC	6 cut(s)	67, 172, 393, 490, 673, 742
Cfr42I	CCGCGG	1 cut(s)	424
CsiI	ACCWGGT	1 cut(s)	762
CviAII	CATG	3 cut(s)	303, 523, 626
DdeI	CTNAG	4 cut(s)	63, 78, 156, 736
DpnI	GATC	1 cut(s)	621
DpnII	GATC	1 cut(s)	619
EaeI	YGGCCR	1 cut(s)	318
EagI	CGGCCG	1 cut(s)	318
Eam1104I	CTCTTC	2 cut(s)	121, 254
EarI	CTCTTC	2 cut(s)	121, 254
EclXI	CGGCCG	1 cut(s)	318
Eco130I	CCWWGG	2 cut(s)	103, 302
Eco47I	GGWCC	2 cut(s)	172, 742
Eco52I	CGGCCG	1 cut(s)	318
Eco88I	CYCGRG	4 cut(s)	377, 390, 530, 652
EcoO109I	RGGNCCY	1 cut(s)	67
EcoRII	CCWGG	4 cut(s)	132, 669, 675, 762
EcoT14I	CCWWGG	2 cut(s)	103, 302
ErhI	CCWWGG	2 cut(s)	103, 302
FaeI	CATG	3 cut(s)	306, 526, 629
FaiI	YATR	8 cut(s)	233, 304, 399, 524, 551, 560, 600, 627
FalI	AAGNNNNNCTT	2 cut(s)	428, 460
FatI	CATG	3 cut(s)	302, 522, 625
FauI	CCCGC	1 cut(s)	342
FbaI	TGATCA	1 cut(s)	619
FblI	GTMKAC	1 cut(s)	536
Fnu4HI	GCNGC	6 cut(s)	318, 387, 408, 424, 615, 782
FokI	GGATG	5 cut(s)	260, 404, 692, 763, 770
Fsp4HI	GCNGC	6 cut(s)	318, 387, 408, 424, 615, 782
GlaI	GCGC	1 cut(s)	416
GluI	GCNGC	6 cut(s)	318, 387, 408, 424, 615, 782
GsaI	CCCAGC	1 cut(s)	496
GsuI	CTGGAG	1 cut(s)	482
HaeIII	GGCC	8 cut(s)	38, 69, 301, 320, 395, 434, 491, 675
HapII	CCGG	4 cut(s)	464, 476, 482, 731
HhaI	GCGC	1 cut(s)	417
Hin1II	CATG	3 cut(s)	306, 526, 629
Hin6I	GCGC	1 cut(s)	415
HinP1I	GCGC	1 cut(s)	415
HincII	GTYRAC	1 cut(s)	537
HindII	GTYRAC	1 cut(s)	537
HinfI	GANTC	9 cut(s)	113, 325, 351, 533, 662, 683, 714, 720, 734
HpaII	CCGG	4 cut(s)	464, 476, 482, 731
HphI	GGTGA	5 cut(s)	22, 178, 614, 715, 737
Hpy166II	GTNNAC	4 cut(s)	172, 537, 713, 742
Hpy188I	TCNGA	6 cut(s)	25, 79, 97, 159, 362, 719
Hpy188III	TCNNGA	5 cut(s)	329, 530, 583, 652, 791
Hpy8I	GTNNAC	4 cut(s)	172, 537, 713, 742
Hpy99I	CGWCG	1 cut(s)	697
HpyAV	CCTTC	3 cut(s)	154, 376, 585
HpyCH4III	ACNGT	1 cut(s)	788
HpyCH4V	TGCA	5 cut(s)	142, 197, 242, 522, 542
HpyF10VI	GCNNNNNNNGC	4 cut(s)	148, 392, 423, 643
HpyF3I	CTNAG	4 cut(s)	63, 78, 156, 736
Hsp92II	CATG	3 cut(s)	306, 526, 629
HspAI	GCGC	1 cut(s)	415
Ksp22I	TGATCA	1 cut(s)	619
KspI	CCGCGG	1 cut(s)	424
Kzo9I	GATC	1 cut(s)	619
LmnI	GCTCC	4 cut(s)	478, 484, 501, 562
Lsp1109I	GCAGC	3 cut(s)	373, 601, 793
LweI	GCATC	4 cut(s)	426, 551, 741, 805
MabI	ACCWGGT	1 cut(s)	762
MaeIII	GTNAC	2 cut(s)	184, 766
MalI	GATC	1 cut(s)	621
MboI	GATC	1 cut(s)	619
MboII	GAAGA	6 cut(s)	108, 232, 235, 265, 271, 283
MluCI	AATT	1 cut(s)	210
MlyI	GAGTC	7 cut(s)	107, 360, 542, 671, 692, 708, 728
MmeI	TCCRAC	2 cut(s)	48, 144
MroXI	GAANNNNTTC	1 cut(s)	590
MseI	TTAA	1 cut(s)	213
MslI	CAYNNNNRTG	2 cut(s)	630, 789
MspA1I	CMGCKG	2 cut(s)	62, 423
MspI	CCGG	4 cut(s)	464, 476, 482, 731
MspR9I	CCNGG	5 cut(s)	134, 464, 671, 677, 764
MvaI	CCWGG	4 cut(s)	134, 671, 677, 764
MvnI	CGCG	2 cut(s)	330, 423
MwoI	GCNNNNNNNGC	4 cut(s)	148, 392, 423, 643
NciI	CCSGG	1 cut(s)	464
NcoI	CCATGG	1 cut(s)	302
NdeII	GATC	1 cut(s)	619
NlaIII	CATG	3 cut(s)	306, 526, 629
NlaIV	GGNNCC	5 cut(s)	174, 364, 468, 480, 564
NmeAIII	GCCGAG	1 cut(s)	346
NmuCI	GTSAC	1 cut(s)	184
NruI	TCGCGA	1 cut(s)	330
OliI	CACNNNNGTG	1 cut(s)	789
PaeR7I	CTCGAG	2 cut(s)	530, 652
PdmI	GAANNNNTTC	1 cut(s)	590
PfeI	GAWTC	2 cut(s)	325, 720
PkrI	GCNGC	6 cut(s)	319, 388, 409, 425, 616, 783
PleI	GAGTC	7 cut(s)	107, 359, 541, 670, 691, 708, 728
PpsI	GAGTC	7 cut(s)	107, 359, 541, 670, 691, 708, 728
Psp6I	CCWGG	4 cut(s)	132, 669, 675, 762
PspFI	CCCAGC	1 cut(s)	492
PspGI	CCWGG	4 cut(s)	132, 669, 675, 762
PspN4I	GGNNCC	5 cut(s)	174, 364, 468, 480, 564
PspPI	GGNCC	6 cut(s)	67, 172, 393, 490, 673, 742
PstNI	CAGNNNCTG	1 cut(s)	139
RruI	TCGCGA	1 cut(s)	330
RseI	CAYNNNNRTG	2 cut(s)	630, 789
SacII	CCGCGG	1 cut(s)	424
SalI	GTCGAC	1 cut(s)	535
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	6 cut(s)	318, 387, 408, 424, 615, 782
Sau3AI	GATC	1 cut(s)	619
Sau96I	GGNCC	6 cut(s)	67, 172, 393, 490, 673, 742
SchI	GAGTC	7 cut(s)	107, 360, 542, 671, 692, 708, 728
ScrFI	CCNGG	5 cut(s)	134, 464, 671, 677, 764
SexAI	ACCWGGT	1 cut(s)	762
SfaNI	GCATC	4 cut(s)	426, 551, 741, 805
SfcI	CTRYAG	1 cut(s)	280
Sfr274I	CTCGAG	2 cut(s)	530, 652
Sfr303I	CCGCGG	1 cut(s)	424
SgrBI	CCGCGG	1 cut(s)	424
SinI	GGWCC	2 cut(s)	172, 742
SlaI	CTCGAG	2 cut(s)	530, 652
SmiMI	CAYNNNNRTG	2 cut(s)	630, 789
SmlI	CTYRAG	2 cut(s)	530, 652
SmoI	CTYRAG	2 cut(s)	530, 652
Sse9I	AATT	1 cut(s)	210
SsiI	CCGC	8 cut(s)	60, 130, 317, 335, 408, 421, 423, 517
StyD4I	CCNGG	5 cut(s)	132, 462, 669, 675, 762
StyI	CCWWGG	2 cut(s)	103, 302
TaaI	ACNGT	1 cut(s)	788
TaqI	TCGA	5 cut(s)	203, 531, 536, 653, 695
TasI	AATT	1 cut(s)	210
TauI	GCSGC	3 cut(s)	320, 410, 426
TfiI	GAWTC	2 cut(s)	325, 720
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	3 cut(s)	204, 693, 744
TseFI	GTSAC	1 cut(s)	184
TseI	GCWGC	3 cut(s)	386, 614, 781
Tsp45I	GTSAC	1 cut(s)	184
TspDTI	ATGAA	2 cut(s)	417, 567
TspRI	CASTG	3 cut(s)	204, 693, 744
VpaK11BI	GGWCC	2 cut(s)	172, 742
XcmI	CCANNNNNNNNNTGG	1 cut(s)	309
XhoI	CTCGAG	2 cut(s)	530, 652
XmiI	GTMKAC	1 cut(s)	536
XmnI	GAANNNNTTC	1 cut(s)	590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.