Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009933

Physical Location & Seq

Genomic Coordinates Reverse (-)

5976645 .. 5977727

Gene Structure 1083 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G17460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGAATCCGGAACAGAAACAGCGCGAATGCATAGTCTGCCGTGAAAAAGAGCCGTCGTTCATCCACACCGTCATCAAAACCGGCGCTTTCCGGCGACTCTGCACCGATTGTTTGCTCAAAGAGTACCGAGAACACTTTTGCTCTGTTTGTTTCAATCTCTTCGACAACGCCGTTCCTCCACAAGCTCGTATCATCTGCGTCAATTGCCCATCAAGCACCCACCTTTCTTGCTCAACTCAGCCGCCGTCTTCCTCCGCCGCATCTTCCTCCTCCTCCGCTCCACCACCAGCTTCTTCCTTCACATGCCAGCCATGTTCTAACCCCAATTTCACCTTCTTCCCCAAATCTCGAGTCAATGAAGACGTCCCCGATGAAACGCCTCTCACTCCGAAATCGGCAATGGCTCTTGTCGCAGCTGGAAATATCTCGGTGGCTAATATGAATAAAGCGGTGGCTCTGTTAAAGGAAGAAGCTCTTAAGAAGATCATAGCAGCTAAAACGGCCAAGTTGAGAGCTAAAGGTGCATTGACGAATCTTCAGGATATTGTTATTCGACAGAGTAAGGTCACCGGCAAGAGGAAGGAAGATGAACGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

198

Amino Acids

21.64

Weight (kDa)

9.1

Isoelectric Point (pI)

52.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17460
fragaria_vesca	FvH4_2g22261 FvH4_3g29111 FvH4_6g06731 FvH4_7g12701
malus_domestica	MD13G1139400.v1.1 MD16G1136300.v1.1
prunus_persica	Prupe.1G105300_v2.0.a1 Prupe.1G105300_v2.0.a1
pyrus_communis	pycom16g11990
rosa_chinensis	RchiOBHm_Chr4g0427521
rosa_laevigata	RLG00000007231
rosa_multiflora	Rmu_sc0001006.1_g000001 Rmu_sc0009627.1_g000002
rosa_roxburghii	Rroxscaffold_5G00369160
rosa_rugosa	Rorug04G0218300
rosa_samantha	Rh4AG274800 Rh4BG280600 Rh4CG295900 Rh4DG278000
rosa_wichuraiana	Rw4G023820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	366
AccBSI	CCGCTC	1 cut(s)	278
AccII	CGCG	1 cut(s)	24
AccIII	TCCGGA	1 cut(s)	7
AciI	CCGC	5 cut(s)	242, 255, 258, 276, 449
AcoI	YGGCCR	1 cut(s)	501
AcuI	CTGAAG	1 cut(s)	521
AcyI	GRCGYC	1 cut(s)	363
AfaI	GTAC	1 cut(s)	125
AfiI	CCNNNNNNNGG	1 cut(s)	576
AflII	CTTAAG	1 cut(s)	476
AgsI	TTSAA	1 cut(s)	154
AjuI	GAANNNNNNNTTGG	2 cut(s)	317, 349
AluBI	AGCT	6 cut(s)	185, 290, 416, 473, 494, 515
AluI	AGCT	6 cut(s)	185, 290, 416, 473, 494, 515
Ama87I	CYCGRG	1 cut(s)	348
Aor13HI	TCCGGA	1 cut(s)	7
AoxI	GGCC	1 cut(s)	501
ApeKI	GCWGC	2 cut(s)	413, 491
ArsI	GACNNNNNNTTYG	4 cut(s)	18, 50, 336, 368
AspLEI	GCGC	2 cut(s)	24, 86
AsuHPI	GGTGA	2 cut(s)	322, 559
AvaI	CYCGRG	1 cut(s)	348
BbsI	GAAGAC	2 cut(s)	240, 366
BbvI	GCAGC	2 cut(s)	425, 503
BccI	CCATC	1 cut(s)	217
BceAI	ACGGC	5 cut(s)	24, 37, 155, 229, 516
BfoI	RGCGCY	1 cut(s)	87
BfrI	CTTAAG	1 cut(s)	476
BisI	GCNGC	4 cut(s)	242, 258, 414, 492
BlsI	GCNGC	4 cut(s)	243, 259, 415, 493
BmeT110I	CYCGRG	1 cut(s)	348
BmsI	GCATC	1 cut(s)	269
BpiI	GAAGAC	2 cut(s)	240, 366
BsaHI	GRCGYC	1 cut(s)	363
BsaWI	WCCGGW	1 cut(s)	7
Bsc4I	CCNNNNNNNGG	1 cut(s)	576
Bse118I	RCCGGY	2 cut(s)	80, 569
Bse3DI	GCAATG	1 cut(s)	405
BseAI	TCCGGA	1 cut(s)	7
BseGI	GGATG	1 cut(s)	60
BseLI	CCNNNNNNNGG	1 cut(s)	576
BseMI	GCAATG	1 cut(s)	405
BseMII	CTCAG	1 cut(s)	251
BseRI	GAGGAG	2 cut(s)	259, 262
BseXI	GCAGC	2 cut(s)	425, 503
BsgI	GTGCAG	1 cut(s)	85
Bsh1236I	CGCG	1 cut(s)	24
BshFI	GGCC	1 cut(s)	503
BsiHKCI	CYCGRG	1 cut(s)	348
BsiSI	CCGG	4 cut(s)	8, 81, 91, 570
BslFI	GGGAC	1 cut(s)	350
BslI	CCNNNNNNNGG	1 cut(s)	576
BsmFI	GGGAC	1 cut(s)	350
BsmI	GAATGC	1 cut(s)	32
BsnI	GGCC	1 cut(s)	503
BsoBI	CYCGRG	1 cut(s)	348
Bsp13I	TCCGGA	1 cut(s)	7
Bsp143I	GATC	1 cut(s)	483
BspACI	CCGC	5 cut(s)	242, 255, 258, 276, 449
BspANI	GGCC	1 cut(s)	503
BspCNI	CTCAG	1 cut(s)	250
BspEI	TCCGGA	1 cut(s)	7
BspFNI	CGCG	1 cut(s)	24
BspTI	CTTAAG	1 cut(s)	476
BsrBI	CCGCTC	1 cut(s)	278
BsrDI	GCAATG	1 cut(s)	405
BsrFI	RCCGGY	2 cut(s)	80, 569
BssAI	RCCGGY	2 cut(s)	80, 569
BssMI	GATC	1 cut(s)	483
BssNI	GRCGYC	1 cut(s)	363
Bst4CI	ACNGT	1 cut(s)	70
Bst6I	CTCTTC	1 cut(s)	164
BstACI	GRCGYC	1 cut(s)	363
BstAFI	CTTAAG	1 cut(s)	476
BstAPI	GCANNNNNTGC	1 cut(s)	36
BstC8I	GCNNGC	1 cut(s)	308
BstDEI	CTNAG	1 cut(s)	237
BstEII	GGTNACC	1 cut(s)	565
BstF5I	GGATG	1 cut(s)	60
BstFNI	CGCG	1 cut(s)	24
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	2 cut(s)	24, 86
BstKTI	GATC	1 cut(s)	486
BstMBI	GATC	1 cut(s)	483
BstMWI	GCNNNNNNNGC	6 cut(s)	36, 204, 213, 410, 500, 521
BstNSI	RCATGY	1 cut(s)	306
BstPI	GGTNACC	1 cut(s)	565
BstUI	CGCG	1 cut(s)	24
BstV1I	GCAGC	2 cut(s)	425, 503
BstV2I	GAAGAC	2 cut(s)	240, 366
BsuRI	GGCC	1 cut(s)	503
BtsCI	GGATG	1 cut(s)	60
Cac8I	GCNNGC	1 cut(s)	308
CfoI	GCGC	2 cut(s)	24, 86
Cfr10I	RCCGGY	2 cut(s)	80, 569
CseI	GACGC	1 cut(s)	187
Csp6I	GTAC	1 cut(s)	124
CspCI	CAANNNNNGTGG	2 cut(s)	209, 244
CviAII	CATG	2 cut(s)	303, 312
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	1 cut(s)	237
DpnI	GATC	1 cut(s)	485
DpnII	GATC	1 cut(s)	483
EaeI	YGGCCR	1 cut(s)	501
Eam1104I	CTCTTC	1 cut(s)	164
EarI	CTCTTC	1 cut(s)	164
EciI	GGCGGA	1 cut(s)	244
Eco57I	CTGAAG	1 cut(s)	521
Eco88I	CYCGRG	1 cut(s)	348
Eco91I	GGTNACC	1 cut(s)	565
EcoO65I	GGTNACC	1 cut(s)	565
EcoT22I	ATGCAT	1 cut(s)	32
FaeI	CATG	2 cut(s)	306, 315
FaiI	YATR	5 cut(s)	32, 304, 313, 440, 488
FalI	AAGNNNNNCTT	2 cut(s)	459, 491
FaqI	GGGAC	1 cut(s)	350
FatI	CATG	2 cut(s)	302, 311
Fnu4HI	GCNGC	4 cut(s)	242, 258, 414, 492
FokI	GGATG	1 cut(s)	47
Fsp4HI	GCNGC	4 cut(s)	242, 258, 414, 492
GlaI	GCGC	2 cut(s)	23, 85
GluI	GCNGC	4 cut(s)	242, 258, 414, 492
HaeII	RGCGCY	1 cut(s)	87
HaeIII	GGCC	1 cut(s)	503
HapII	CCGG	4 cut(s)	8, 81, 91, 570
HgaI	GACGC	1 cut(s)	187
HhaI	GCGC	2 cut(s)	24, 86
Hin1I	GRCGYC	1 cut(s)	363
Hin1II	CATG	2 cut(s)	306, 315
Hin6I	GCGC	2 cut(s)	22, 84
HinP1I	GCGC	2 cut(s)	22, 84
HinfI	GANTC	4 cut(s)	4, 96, 351, 532
HpaII	CCGG	4 cut(s)	8, 81, 91, 570
HphI	GGTGA	2 cut(s)	322, 559
Hpy188I	TCNGA	1 cut(s)	390
Hpy188III	TCNNGA	3 cut(s)	8, 348, 539
Hpy99I	CGWCG	1 cut(s)	58
HpyAV	CCTTC	3 cut(s)	307, 343, 574
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4IV	ACGT	1 cut(s)	363
HpyCH4V	TGCA	3 cut(s)	30, 102, 524
HpyF10VI	GCNNNNNNNGC	6 cut(s)	36, 204, 213, 410, 500, 521
HpyF3I	CTNAG	1 cut(s)	237
HpySE526I	ACGT	1 cut(s)	363
Hsp92I	GRCGYC	1 cut(s)	363
Hsp92II	CATG	2 cut(s)	306, 315
HspAI	GCGC	2 cut(s)	22, 84
Kpn2I	TCCGGA	1 cut(s)	7
Kzo9I	GATC	1 cut(s)	483
LmnI	GCTCC	1 cut(s)	283
LpnPI	CCDG	8 cut(s)	21, 94, 104, 300, 320, 402, 524, 583
Lsp1109I	GCAGC	2 cut(s)	425, 503
LweI	GCATC	1 cut(s)	269
MaeII	ACGT	1 cut(s)	363
MaeIII	GTNAC	1 cut(s)	565
MalI	GATC	1 cut(s)	485
MbiI	CCGCTC	1 cut(s)	278
MboI	GATC	1 cut(s)	483
MfeI	CAATTG	1 cut(s)	202
MluCI	AATT	2 cut(s)	202, 325
MlyI	GAGTC	2 cut(s)	90, 360
MnlI	CCTC	7 cut(s)	186, 262, 277, 280, 283, 390, 570
Mph1103I	ATGCAT	1 cut(s)	32
MroI	TCCGGA	1 cut(s)	7
MseI	TTAA	2 cut(s)	461, 477
MspA1I	CMGCKG	1 cut(s)	416
MspCI	CTTAAG	1 cut(s)	476
MspI	CCGG	4 cut(s)	8, 81, 91, 570
MunI	CAATTG	1 cut(s)	202
Mva1269I	GAATGC	1 cut(s)	32
MvnI	CGCG	1 cut(s)	24
MwoI	GCNNNNNNNGC	6 cut(s)	36, 204, 213, 410, 500, 521
NdeII	GATC	1 cut(s)	483
NlaIII	CATG	2 cut(s)	306, 315
NmuCI	GTSAC	1 cut(s)	565
NsiI	ATGCAT	1 cut(s)	32
NspI	RCATGY	1 cut(s)	306
PaeR7I	CTCGAG	1 cut(s)	348
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PctI	GAATGC	1 cut(s)	32
PfeI	GAWTC	2 cut(s)	4, 532
PkrI	GCNGC	4 cut(s)	243, 259, 415, 493
PleI	GAGTC	2 cut(s)	90, 359
PpsI	GAGTC	2 cut(s)	90, 359
PspEI	GGTNACC	1 cut(s)	565
PvuII	CAGCTG	1 cut(s)	416
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
SaqAI	TTAA	2 cut(s)	461, 477
SatI	GCNGC	4 cut(s)	242, 258, 414, 492
Sau3AI	GATC	1 cut(s)	483
SchI	GAGTC	2 cut(s)	90, 360
SfaNI	GCATC	1 cut(s)	269
Sfr274I	CTCGAG	1 cut(s)	348
SlaI	CTCGAG	1 cut(s)	348
SmlI	CTYRAG	2 cut(s)	348, 476
SmoI	CTYRAG	2 cut(s)	348, 476
Sse9I	AATT	2 cut(s)	202, 325
SsiI	CCGC	5 cut(s)	242, 255, 258, 276, 449
TaaI	ACNGT	1 cut(s)	70
TaiI	ACGT	1 cut(s)	366
TaqI	TCGA	3 cut(s)	162, 349, 553
TasI	AATT	2 cut(s)	202, 325
TauI	GCSGC	2 cut(s)	244, 260
TfiI	GAWTC	2 cut(s)	4, 532
Tru1I	TTAA	2 cut(s)	461, 477
Tru9I	TTAA	2 cut(s)	461, 477
TseFI	GTSAC	1 cut(s)	565
TseI	GCWGC	2 cut(s)	413, 491
Tsp45I	GTSAC	1 cut(s)	565
TspDTI	ATGAA	5 cut(s)	17, 49, 372, 387, 455
Vha464I	CTTAAG	1 cut(s)	476
XceI	RCATGY	1 cut(s)	306
XhoI	CTCGAG	1 cut(s)	348
ZraI	GACGTC	1 cut(s)	364
Zsp2I	ATGCAT	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.