Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0009933

Physical Location & Seq

Genomic Coordinates Reverse (-)

55519042 .. 55519779

Gene Structure 738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG295900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGCGATGAAGCGAGACCTCCCGGAATCCGATAAGCGCCTCTGCCGCGGCTGCGGCTCCTCCGAGCGGTGGCTCCTCCACTACATCCGCCTCCGCGGAACCTTCCAGCGTCTCTGCACCAACTGCGTCCTCAAGAACCACCCCGGCCTCTTCTGCCCCGTCTGCCTCGACGTCTTCGACTTCGACCACCCCCCGCCGGCGCGTGACCGCGTCATGTGCGTCAAGTGCCCCTCCATCGCCCACAACGACTGCGCCAACTGCGCCTCCTTCGAGTGCCCTCCCTGCTCCCAATCCGCCTTCTCCTTCTTCAACTTCGAACGCAACAACGCCGAAGCGGCGGCGATGCTCCTCGGGAAGGAATCCGCTAAGGCCTTCGTGGCCGCGGCGAAAATCGCGGCCAATTCGATGAAGAAGGCGGCCGCCGCCGCCAGGAGCGACGCCGAGCGCCGCGTCAAGGAGGCGGTCTCGGCGAAGAAGAGGGCGAGGGAGGCGCTGGAGGTGCTGGCTTTTCTGGTGAATAAAGAAAAGGAGGAGAAGGATTCGAAAGGCGGAGGAGAGCTGAATTCGGGTAGAGTGGAGCACCAGAAGCAGAAATCGGAGACGAATCCCGGTGCAATGCAAGTTCTGGCCAACCTTGCTACTTCTATGGCGACTGAGGGAACCAATGGGGTGCGAGGTAATCAATTGCAGACCAATGATATGGAGGAAGGAGGTGATCAAGTCAAGGAAGGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

245

Amino Acids

26.73

Weight (kDa)

8.58

Isoelectric Point (pI)

42.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17460
fragaria_vesca	FvH4_2g22261 FvH4_3g29111 FvH4_6g06731 FvH4_7g12701
malus_domestica	MD13G1139400.v1.1 MD16G1136300.v1.1
prunus_persica	Prupe.1G105300_v2.0.a1 Prupe.1G105300_v2.0.a1
pyrus_communis	pycom16g11990
rosa_chinensis	RchiOBHm_Chr4g0427521
rosa_laevigata	RLG00000007231
rosa_multiflora	Rmu_sc0001006.1_g000001 Rmu_sc0009627.1_g000002
rosa_roxburghii	Rroxscaffold_5G00369160
rosa_rugosa	Rorug04G0218300
rosa_samantha	Rh4AG274800 Rh4BG280600 Rh4CG295900 Rh4DG278000
rosa_wichuraiana	Rw4G023820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	174
AccBSI	CCGCTC	1 cut(s)	67
AccII	CGCG	7 cut(s)	48, 96, 202, 210, 383, 395, 450
AcoI	YGGCCR	4 cut(s)	378, 396, 417, 627
AcsI	RAATTY	1 cut(s)	562
AcyI	GRCGYC	2 cut(s)	171, 438
AfiI	CCNNNNNNNGG	6 cut(s)	66, 69, 196, 355, 429, 454
AgsI	TTSAA	1 cut(s)	310
AjnI	CCWGG	1 cut(s)	428
AluBI	AGCT	2 cut(s)	559, 734
AluI	AGCT	2 cut(s)	559, 734
Alw21I	GWGCWC	1 cut(s)	582
Alw26I	GTCTC	4 cut(s)	9, 116, 469, 593
Ama87I	CYCGRG	1 cut(s)	350
AoxI	GGCC	6 cut(s)	145, 369, 378, 396, 417, 627
ApeKI	GCWGC	1 cut(s)	51
ApoI	RAATTY	1 cut(s)	562
AspLEI	GCGC	6 cut(s)	39, 202, 254, 263, 447, 493
AsuC2I	CCSGG	3 cut(s)	23, 144, 609
AsuHPI	GGTGA	2 cut(s)	526, 725
AsuII	TTCGAA	2 cut(s)	315, 542
AvaI	CYCGRG	1 cut(s)	350
BaeGI	GKGCMC	2 cut(s)	230, 278
BalI	TGGCCA	1 cut(s)	629
BbsI	GAAGAC	1 cut(s)	166
Bbv12I	GWGCWC	1 cut(s)	582
BbvI	GCAGC	1 cut(s)	38
BccI	CCATC	1 cut(s)	242
BciT130I	CCWGG	1 cut(s)	430
BclI	TGATCA	1 cut(s)	715
BcnI	CCSGG	3 cut(s)	23, 144, 609
BcoDI	GTCTC	4 cut(s)	9, 116, 469, 593
BfoI	RGCGCY	3 cut(s)	40, 448, 494
BglI	GCCNNNNNGGC	2 cut(s)	335, 377
Bme1390I	CCNGG	4 cut(s)	23, 144, 430, 609
BmeT110I	CYCGRG	1 cut(s)	350
BmiI	GGNNCC	4 cut(s)	58, 74, 100, 661
BmrFI	CCNGG	4 cut(s)	23, 144, 430, 609
BmsI	GCATC	1 cut(s)	333
BpiI	GAAGAC	1 cut(s)	166
BplI	GAGNNNNNCTC	2 cut(s)	449, 481
BpmI	CTGGAG	1 cut(s)	515
Bpu10I	CCTNAGC	1 cut(s)	366
Bpu14I	TTCGAA	2 cut(s)	315, 542
BpuEI	CTTGAG	1 cut(s)	116
BpuMI	CCSGG	3 cut(s)	23, 144, 609
BsaHI	GRCGYC	2 cut(s)	171, 438
BsaI	GGTCTC	2 cut(s)	9, 469
BsaJI	CCNNGG	5 cut(s)	46, 94, 142, 349, 381
BsaXI	ACNNNNNCTCC	2 cut(s)	248, 278
Bsc4I	CCNNNNNNNGG	6 cut(s)	66, 69, 196, 355, 429, 454
Bse118I	RCCGGY	1 cut(s)	196
Bse3DI	GCAATG	1 cut(s)	621
BseBI	CCWGG	1 cut(s)	430
BseDI	CCNNGG	5 cut(s)	46, 94, 142, 349, 381
BseGI	GGATG	1 cut(s)	84
BseLI	CCNNNNNNNGG	6 cut(s)	66, 69, 196, 355, 429, 454
BseMI	GCAATG	1 cut(s)	621
BseMII	CTCAG	1 cut(s)	645
BseRI	GAGGAG	5 cut(s)	49, 65, 338, 545, 567
BseSI	GKGCMC	2 cut(s)	230, 278
BseX3I	CGGCCG	1 cut(s)	417
BseXI	GCAGC	1 cut(s)	38
BsgI	GTGCAG	1 cut(s)	100
Bsh1236I	CGCG	7 cut(s)	48, 96, 202, 210, 383, 395, 450
Bsh1285I	CGRYCG	1 cut(s)	420
BshFI	GGCC	6 cut(s)	147, 371, 380, 398, 419, 629
BsiEI	CGRYCG	1 cut(s)	420
BsiHKAI	GWGCWC	1 cut(s)	582
BsiHKCI	CYCGRG	1 cut(s)	350
BsiSI	CCGG	4 cut(s)	23, 144, 197, 609
BslI	CCNNNNNNNGG	6 cut(s)	66, 69, 196, 355, 429, 454
BsmAI	GTCTC	4 cut(s)	9, 116, 469, 593
BsmBI	CGTCTC	2 cut(s)	116, 593
BsnI	GGCC	6 cut(s)	147, 371, 380, 398, 419, 629
Bso31I	GGTCTC	2 cut(s)	9, 469
BsoBI	CYCGRG	1 cut(s)	350
Bsp119I	TTCGAA	2 cut(s)	315, 542
Bsp1286I	GDGCHC	3 cut(s)	230, 278, 582
Bsp143I	GATC	1 cut(s)	715
BspANI	GGCC	6 cut(s)	147, 371, 380, 398, 419, 629
BspCNI	CTCAG	1 cut(s)	646
BspFNI	CGCG	7 cut(s)	48, 96, 202, 210, 383, 395, 450
BspLI	GGNNCC	4 cut(s)	58, 74, 100, 661
BspT104I	TTCGAA	2 cut(s)	315, 542
BspTNI	GGTCTC	2 cut(s)	9, 469
BsrBI	CCGCTC	1 cut(s)	67
BsrDI	GCAATG	1 cut(s)	621
BsrFI	RCCGGY	1 cut(s)	196
BssAI	RCCGGY	1 cut(s)	196
BssECI	CCNNGG	5 cut(s)	46, 94, 142, 349, 381
BssMI	GATC	1 cut(s)	715
BssNI	GRCGYC	2 cut(s)	171, 438
Bst2UI	CCWGG	1 cut(s)	430
Bst6I	CTCTTC	2 cut(s)	155, 470
BstACI	GRCGYC	2 cut(s)	171, 438
BstAPI	GCANNNNNTGC	1 cut(s)	123
BstBI	TTCGAA	2 cut(s)	315, 542
BstC8I	GCNNGC	2 cut(s)	198, 504
BstDEI	CTNAG	2 cut(s)	366, 654
BstDSI	CCRYGG	3 cut(s)	46, 94, 381
BstENI	CCTNNNNNAGG	1 cut(s)	353
BstF5I	GGATG	1 cut(s)	84
BstFNI	CGCG	7 cut(s)	48, 96, 202, 210, 383, 395, 450
BstH2I	RGCGCY	3 cut(s)	40, 448, 494
BstHHI	GCGC	6 cut(s)	39, 202, 254, 263, 447, 493
BstKTI	GATC	1 cut(s)	718
BstMAI	GTCTC	4 cut(s)	9, 116, 469, 593
BstMBI	GATC	1 cut(s)	715
BstMCI	CGRYCG	1 cut(s)	420
BstNI	CCWGG	1 cut(s)	430
BstSCI	CCNGG	4 cut(s)	21, 142, 428, 607
BstSLI	GKGCMC	2 cut(s)	230, 278
BstUI	CGCG	7 cut(s)	48, 96, 202, 210, 383, 395, 450
BstV1I	GCAGC	1 cut(s)	38
BstV2I	GAAGAC	1 cut(s)	166
BstXI	CCANNNNNNTGG	1 cut(s)	700
BstZI	CGGCCG	1 cut(s)	417
BsuRI	GGCC	6 cut(s)	147, 371, 380, 398, 419, 629
BtgI	CCRYGG	3 cut(s)	46, 94, 381
BtgZI	GCGATG	3 cut(s)	20, 220, 356
BtsCI	GGATG	1 cut(s)	84
Cac8I	GCNNGC	2 cut(s)	198, 504
CciNI	GCGGCCGC	1 cut(s)	417
CfoI	GCGC	6 cut(s)	39, 202, 254, 263, 447, 493
Cfr10I	RCCGGY	1 cut(s)	196
Cfr42I	CCGCGG	3 cut(s)	49, 97, 384
CseI	GACGC	6 cut(s)	98, 115, 199, 208, 439, 446
CviAII	CATG	1 cut(s)	214
DdeI	CTNAG	2 cut(s)	366, 654
DpnI	GATC	1 cut(s)	717
DpnII	GATC	1 cut(s)	715
EaeI	YGGCCR	4 cut(s)	378, 396, 417, 627
EagI	CGGCCG	1 cut(s)	417
Eam1104I	CTCTTC	2 cut(s)	155, 470
EarI	CTCTTC	2 cut(s)	155, 470
EciI	GGCGGA	3 cut(s)	77, 283, 564
EclXI	CGGCCG	1 cut(s)	417
Eco147I	AGGCCT	1 cut(s)	371
Eco31I	GGTCTC	2 cut(s)	9, 469
Eco52I	CGGCCG	1 cut(s)	417
Eco88I	CYCGRG	1 cut(s)	350
EcoNI	CCTNNNNNAGG	1 cut(s)	353
EcoRI	GAATTC	1 cut(s)	562
EcoRII	CCWGG	1 cut(s)	428
Esp3I	CGTCTC	2 cut(s)	116, 593
FaeI	CATG	1 cut(s)	217
FaiI	YATR	3 cut(s)	215, 647, 701
FatI	CATG	1 cut(s)	213
FauI	CCCGC	1 cut(s)	201
FbaI	TGATCA	1 cut(s)	715
FokI	GGATG	1 cut(s)	71
GlaI	GCGC	6 cut(s)	38, 201, 253, 262, 446, 492
GsuI	CTGGAG	1 cut(s)	515
HaeII	RGCGCY	3 cut(s)	40, 448, 494
HaeIII	GGCC	6 cut(s)	147, 371, 380, 398, 419, 629
HapII	CCGG	4 cut(s)	23, 144, 197, 609
HgaI	GACGC	6 cut(s)	98, 115, 199, 208, 439, 446
HhaI	GCGC	6 cut(s)	39, 202, 254, 263, 447, 493
Hin1I	GRCGYC	2 cut(s)	171, 438
Hin1II	CATG	1 cut(s)	217
Hin6I	GCGC	6 cut(s)	37, 200, 252, 261, 445, 491
HinP1I	GCGC	6 cut(s)	37, 200, 252, 261, 445, 491
HinfI	GANTC	4 cut(s)	26, 359, 539, 604
HpaII	CCGG	4 cut(s)	23, 144, 197, 609
HphI	GGTGA	2 cut(s)	526, 725
Hpy188I	TCNGA	3 cut(s)	31, 64, 598
Hpy188III	TCNNGA	2 cut(s)	133, 352
Hpy99I	CGWCG	2 cut(s)	173, 440
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	4 cut(s)	117, 614, 619, 688
HpyF3I	CTNAG	2 cut(s)	366, 654
HpySE526I	ACGT	1 cut(s)	171
Hsp92I	GRCGYC	2 cut(s)	171, 438
Hsp92II	CATG	1 cut(s)	217
HspAI	GCGC	6 cut(s)	37, 200, 252, 261, 445, 491
KroI	GCCGGC	1 cut(s)	196
KroNI	GCCGGC	1 cut(s)	198
Ksp22I	TGATCA	1 cut(s)	715
KspI	CCGCGG	3 cut(s)	49, 97, 384
Kzo9I	GATC	1 cut(s)	715
LmnI	GCTCC	7 cut(s)	62, 78, 290, 351, 432, 577, 731
Lsp1109I	GCAGC	1 cut(s)	38
LweI	GCATC	1 cut(s)	333
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	1 cut(s)	717
MbiI	CCGCTC	1 cut(s)	67
MboI	GATC	1 cut(s)	715
MboII	GAAGA	6 cut(s)	142, 166, 298, 421, 484, 487
MfeI	CAATTG	1 cut(s)	683
MhlI	GDGCHC	3 cut(s)	230, 278, 582
MlsI	TGGCCA	1 cut(s)	629
MluCI	AATT	3 cut(s)	400, 562, 683
MluNI	TGGCCA	1 cut(s)	629
Mox20I	TGGCCA	1 cut(s)	629
MreI	CGCCGGCG	1 cut(s)	196
MroNI	GCCGGC	1 cut(s)	196
MscI	TGGCCA	1 cut(s)	629
Msp20I	TGGCCA	1 cut(s)	629
MspA1I	CMGCKG	3 cut(s)	48, 96, 383
MspI	CCGG	4 cut(s)	23, 144, 197, 609
MspR9I	CCNGG	4 cut(s)	23, 144, 430, 609
MunI	CAATTG	1 cut(s)	683
MvaI	CCWGG	1 cut(s)	430
MvnI	CGCG	7 cut(s)	48, 96, 202, 210, 383, 395, 450
NaeI	GCCGGC	1 cut(s)	198
NciI	CCSGG	3 cut(s)	23, 144, 609
NdeII	GATC	1 cut(s)	715
NgoMIV	GCCGGC	1 cut(s)	196
NlaIII	CATG	1 cut(s)	217
NlaIV	GGNNCC	4 cut(s)	58, 74, 100, 661
NmeAIII	GCCGAG	2 cut(s)	446, 466
NmuCI	GTSAC	1 cut(s)	203
NotI	GCGGCCGC	1 cut(s)	417
NspV	TTCGAA	2 cut(s)	315, 542
PceI	AGGCCT	1 cut(s)	371
PcsI	WCGNNNNNNNCGW	2 cut(s)	174, 243
PdiI	GCCGGC	1 cut(s)	198
PfeI	GAWTC	4 cut(s)	26, 359, 539, 604
PflFI	GACNNNGTC	1 cut(s)	209
PfoI	TCCNGGA	1 cut(s)	21
Psp6I	CCWGG	1 cut(s)	428
PspGI	CCWGG	1 cut(s)	428
PspN4I	GGNNCC	4 cut(s)	58, 74, 100, 661
PsyI	GACNNNGTC	1 cut(s)	209
SacII	CCGCGG	3 cut(s)	49, 97, 384
Sau3AI	GATC	1 cut(s)	715
ScrFI	CCNGG	4 cut(s)	23, 144, 430, 609
SduI	GDGCHC	3 cut(s)	230, 278, 582
SetI	ASST	9 cut(s)	21, 104, 174, 501, 561, 636, 679, 715, 736
SfaNI	GCATC	1 cut(s)	333
SfiI	GGCCNNNNNGGCC	1 cut(s)	377
Sfr303I	CCGCGG	3 cut(s)	49, 97, 384
SfuI	TTCGAA	2 cut(s)	315, 542
SgrAI	CRCCGGYG	1 cut(s)	196
SgrBI	CCGCGG	3 cut(s)	49, 97, 384
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	3 cut(s)	400, 562, 683
SseBI	AGGCCT	1 cut(s)	371
StuI	AGGCCT	1 cut(s)	371
StyD4I	CCNGG	4 cut(s)	21, 142, 428, 607
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	7 cut(s)	168, 177, 183, 270, 315, 404, 542
TasI	AATT	3 cut(s)	400, 562, 683
TfiI	GAWTC	4 cut(s)	26, 359, 539, 604
TseFI	GTSAC	1 cut(s)	203
TseI	GCWGC	1 cut(s)	51
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	2 cut(s)	23, 422
Tth111I	GACNNNGTC	1 cut(s)	209
XagI	CCTNNNNNAGG	1 cut(s)	353
XapI	RAATTY	1 cut(s)	562
ZraI	GACGTC	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.