Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0009933

Physical Location & Seq

Genomic Coordinates Reverse (-)

10749415 .. 10750131

Gene Structure 717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1139400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGAGGCGAGACGAACCCGAACCCGAGAGGCGACTCTGCGGCGTCTGCGGCTCCTCCGAACGGTGGTTCCTCCATTACATCCGCCACAAAGGGGCGTTTCAGAGGCTCTGCACCAACTGCGTCCTCCAAAACTACCGCGGCCTCTACTGCCCTTTCTGTCTAGAATTCTTCGACCCACCCCTTCTGGCACGTGACCGGGTCATGTGCGTCAAGTGCCCTTCCGTTTCTCACCCCGCCTGCGTCCTCGTCGCCAATTCCTCCTTCCATGGCTTCGAGTGCAATACCTGCCGACAGGGCTACCCCTTCTTCAGCCTCAATCGCCCACAAAACGACGCCAACGACCCCAAAACGGCATTCGTCATCGACAAGGCCAACGCCAAGGCCCTTGTCGCCGCTGCCAAAATTGCTGCGGCTTCGATGGCGAAAGCCGCCGTCGCGGCCAGGACGGAGGCCGAGCGCCGCGTCAGGGAGGCCGTGATGGCGAAGAAGAAGGCGAAGGAGGCGTTGGAGAAACTCAGTTCTCTGGTTAACAAGCAGAAGGAGCAGGATTCAAAAGCTGGAGACGTTGTTTCCGGGCCTAAGAGCCTCAACGGAAAGCCAAAACTGGAGAGTTCTGGTGGAATTCCACCGGCGCCCAAGATTGTTAAGGCTGAGGGAAGTAATGGGTTGGGCAGTGATCCATTGAAAATCGGTAATGTTGACGCCATGGAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

239

Amino Acids

25.97

Weight (kDa)

9.19

Isoelectric Point (pI)

46.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17460
fragaria_vesca	FvH4_2g22261 FvH4_3g29111 FvH4_6g06731 FvH4_7g12701
malus_domestica	MD13G1139400.v1.1 MD16G1136300.v1.1
prunus_persica	Prupe.1G105300_v2.0.a1 Prupe.1G105300_v2.0.a1
pyrus_communis	pycom16g11990
rosa_chinensis	RchiOBHm_Chr4g0427521
rosa_laevigata	RLG00000007231
rosa_multiflora	Rmu_sc0001006.1_g000001 Rmu_sc0009627.1_g000002
rosa_roxburghii	Rroxscaffold_5G00369160
rosa_rugosa	Rorug04G0218300
rosa_samantha	Rh4AG274800 Rh4BG280600 Rh4CG295900 Rh4DG278000
rosa_wichuraiana	Rw4G023820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	293
AccB1I	GGYRCC	1 cut(s)	631
AccII	CGCG	3 cut(s)	138, 437, 462
AclWI	GGATC	1 cut(s)	671
AcoI	YGGCCR	1 cut(s)	438
AcsI	RAATTY	2 cut(s)	164, 621
AcuI	CTGAAG	1 cut(s)	292
AcvI	CACGTG	1 cut(s)	191
AcyI	GRCGYC	4 cut(s)	42, 333, 632, 702
AfiI	CCNNNNNNNGG	5 cut(s)	60, 63, 91, 349, 466
AgsI	TTSAA	2 cut(s)	552, 685
AjnI	CCWGG	1 cut(s)	440
AjuI	GAANNNNNNNTTGG	6 cut(s)	245, 277, 338, 370, 488, 520
AloI	GAACNNNNNNTCC	2 cut(s)	51, 83
AluBI	AGCT	1 cut(s)	557
AluI	AGCT	1 cut(s)	557
Alw26I	GTCTC	2 cut(s)	3, 555
AlwI	GGATC	1 cut(s)	671
Ama87I	CYCGRG	1 cut(s)	23
AoxI	GGCC	7 cut(s)	139, 369, 381, 438, 450, 471, 575
ApeKI	GCWGC	2 cut(s)	395, 407
ApoI	RAATTY	2 cut(s)	164, 621
AspLEI	GCGC	2 cut(s)	459, 634
AspS9I	GGNCC	2 cut(s)	382, 575
AsuC2I	CCSGG	2 cut(s)	197, 574
AsuHPI	GGTGA	1 cut(s)	221
AvaI	CYCGRG	1 cut(s)	23
BaeGI	GKGCMC	1 cut(s)	218
BanI	GGYRCC	1 cut(s)	631
BbrPI	CACGTG	1 cut(s)	191
BbvCI	CCTCAGC	1 cut(s)	651
BbvI	GCAGC	2 cut(s)	382, 394
BccI	CCATC	2 cut(s)	412, 472
BceAI	ACGGC	3 cut(s)	366, 416, 458
BciT130I	CCWGG	1 cut(s)	442
BcnI	CCSGG	2 cut(s)	197, 574
BcoDI	GTCTC	2 cut(s)	3, 555
BfaI	CTAG	1 cut(s)	161
BfoI	RGCGCY	2 cut(s)	460, 635
BfuAI	ACCTGC	1 cut(s)	293
BglI	GCCNNNNNGGC	3 cut(s)	294, 437, 479
Bme1390I	CCNGG	3 cut(s)	197, 442, 574
BmeT110I	CYCGRG	1 cut(s)	23
BmgT120I	GGNCC	2 cut(s)	382, 575
BmiI	GGNNCC	3 cut(s)	52, 68, 633
BmrFI	CCNGG	3 cut(s)	197, 442, 574
BpmI	CTGGAG	2 cut(s)	579, 626
Bpu10I	CCTNAGC	1 cut(s)	651
BpuMI	CCSGG	2 cut(s)	197, 574
BsaAI	YACGTR	1 cut(s)	191
BsaHI	GRCGYC	4 cut(s)	42, 333, 632, 702
BsaJI	CCNNGG	4 cut(s)	136, 265, 378, 705
BsaXI	ACNNNNNCTCC	2 cut(s)	552, 582
Bsc4I	CCNNNNNNNGG	5 cut(s)	60, 63, 91, 349, 466
Bse118I	RCCGGY	1 cut(s)	628
Bse1I	ACTGG	1 cut(s)	609
BseBI	CCWGG	1 cut(s)	442
BseDI	CCNNGG	4 cut(s)	136, 265, 378, 705
BseGI	GGATG	1 cut(s)	78
BseLI	CCNNNNNNNGG	5 cut(s)	60, 63, 91, 349, 466
BseMII	CTCAG	2 cut(s)	529, 642
BseNI	ACTGG	1 cut(s)	609
BseRI	GAGGAG	1 cut(s)	43
BseSI	GKGCMC	1 cut(s)	218
BseXI	GCAGC	2 cut(s)	382, 394
BsgI	GTGCAG	1 cut(s)	94
Bsh1236I	CGCG	3 cut(s)	138, 437, 462
BshFI	GGCC	7 cut(s)	141, 371, 383, 440, 452, 473, 577
BshNI	GGYRCC	1 cut(s)	631
BsiHKCI	CYCGRG	1 cut(s)	23
BsiSI	CCGG	3 cut(s)	196, 573, 629
BslI	CCNNNNNNNGG	5 cut(s)	60, 63, 91, 349, 466
BsmAI	GTCTC	2 cut(s)	3, 555
BsmBI	CGTCTC	2 cut(s)	3, 555
BsmI	GAATGC	1 cut(s)	353
BsnI	GGCC	7 cut(s)	141, 371, 383, 440, 452, 473, 577
BsoBI	CYCGRG	1 cut(s)	23
Bsp1286I	GDGCHC	1 cut(s)	218
Bsp143I	GATC	1 cut(s)	676
Bsp19I	CCATGG	2 cut(s)	265, 705
BspANI	GGCC	7 cut(s)	141, 371, 383, 440, 452, 473, 577
BspCNI	CTCAG	2 cut(s)	528, 643
BspFNI	CGCG	3 cut(s)	138, 437, 462
BspLI	GGNNCC	3 cut(s)	52, 68, 633
BspMI	ACCTGC	1 cut(s)	293
BspPI	GGATC	1 cut(s)	671
BspT107I	GGYRCC	1 cut(s)	631
BsrFI	RCCGGY	1 cut(s)	628
BsrI	ACTGG	1 cut(s)	609
BssAI	RCCGGY	1 cut(s)	628
BssECI	CCNNGG	4 cut(s)	136, 265, 378, 705
BssMI	GATC	1 cut(s)	676
BssNI	GRCGYC	4 cut(s)	42, 333, 632, 702
BssT1I	CCWWGG	3 cut(s)	265, 378, 705
Bst2UI	CCWGG	1 cut(s)	442
Bst4CI	ACNGT	1 cut(s)	63
Bst6I	CTCTTC	1 cut(s)	705
BstACI	GRCGYC	4 cut(s)	42, 333, 632, 702
BstAPI	GCANNNNNTGC	2 cut(s)	117, 285
BstBAI	YACGTR	1 cut(s)	191
BstC8I	GCNNGC	1 cut(s)	238
BstDEI	CTNAG	3 cut(s)	515, 579, 651
BstDSI	CCRYGG	3 cut(s)	136, 265, 705
BstF5I	GGATG	1 cut(s)	78
BstFNI	CGCG	3 cut(s)	138, 437, 462
BstH2I	RGCGCY	2 cut(s)	460, 635
BstHHI	GCGC	2 cut(s)	459, 634
BstKTI	GATC	1 cut(s)	679
BstMAI	GTCTC	2 cut(s)	3, 555
BstMBI	GATC	1 cut(s)	676
BstNI	CCWGG	1 cut(s)	442
BstSCI	CCNGG	3 cut(s)	195, 440, 572
BstSLI	GKGCMC	1 cut(s)	218
BstUI	CGCG	3 cut(s)	138, 437, 462
BstV1I	GCAGC	2 cut(s)	382, 394
BsuRI	GGCC	7 cut(s)	141, 371, 383, 440, 452, 473, 577
BtgI	CCRYGG	3 cut(s)	136, 265, 705
BtsCI	GGATG	1 cut(s)	78
BtsI	GCAGTG	1 cut(s)	679
BtsIMutI	CAGTG	1 cut(s)	679
BveI	ACCTGC	1 cut(s)	293
Cac8I	GCNNGC	1 cut(s)	238
CfoI	GCGC	2 cut(s)	459, 634
Cfr10I	RCCGGY	1 cut(s)	628
Cfr13I	GGNCC	2 cut(s)	382, 575
Cfr42I	CCGCGG	1 cut(s)	139
CseI	GACGC	7 cut(s)	31, 109, 196, 229, 341, 451, 710
CviAII	CATG	3 cut(s)	202, 266, 706
DdeI	CTNAG	3 cut(s)	515, 579, 651
DinI	GGCGCC	1 cut(s)	633
DpnI	GATC	1 cut(s)	678
DpnII	GATC	1 cut(s)	676
EaeI	YGGCCR	1 cut(s)	438
Eam1104I	CTCTTC	1 cut(s)	705
EarI	CTCTTC	1 cut(s)	705
EciI	GGCGGA	1 cut(s)	71
Eco130I	CCWWGG	3 cut(s)	265, 378, 705
Eco57I	CTGAAG	1 cut(s)	292
Eco72I	CACGTG	1 cut(s)	191
Eco88I	CYCGRG	1 cut(s)	23
EcoO109I	RGGNCCY	1 cut(s)	382
EcoRI	GAATTC	2 cut(s)	164, 621
EcoRII	CCWGG	1 cut(s)	440
EcoT14I	CCWWGG	3 cut(s)	265, 378, 705
EgeI	GGCGCC	1 cut(s)	633
EheI	GGCGCC	1 cut(s)	633
ErhI	CCWWGG	3 cut(s)	265, 378, 705
Esp3I	CGTCTC	2 cut(s)	3, 555
FaeI	CATG	3 cut(s)	205, 269, 709
FaiI	YATR	3 cut(s)	203, 267, 707
FatI	CATG	3 cut(s)	201, 265, 705
FauI	CCCGC	1 cut(s)	241
FokI	GGATG	1 cut(s)	65
FspBI	CTAG	1 cut(s)	161
GlaI	GCGC	2 cut(s)	458, 633
GsuI	CTGGAG	2 cut(s)	579, 626
HaeII	RGCGCY	2 cut(s)	460, 635
HaeIII	GGCC	7 cut(s)	141, 371, 383, 440, 452, 473, 577
HapII	CCGG	3 cut(s)	196, 573, 629
HgaI	GACGC	7 cut(s)	31, 109, 196, 229, 341, 451, 710
HhaI	GCGC	2 cut(s)	459, 634
Hin1I	GRCGYC	4 cut(s)	42, 333, 632, 702
Hin1II	CATG	3 cut(s)	205, 269, 709
Hin6I	GCGC	2 cut(s)	457, 632
HinP1I	GCGC	2 cut(s)	457, 632
HincII	GTYRAC	2 cut(s)	529, 700
HindII	GTYRAC	2 cut(s)	529, 700
HinfI	GANTC	2 cut(s)	33, 548
HpaI	GTTAAC	1 cut(s)	529
HpaII	CCGG	3 cut(s)	196, 573, 629
HphI	GGTGA	1 cut(s)	221
Hpy166II	GTNNAC	2 cut(s)	529, 700
Hpy188I	TCNGA	2 cut(s)	58, 102
Hpy188III	TCNNGA	1 cut(s)	161
Hpy8I	GTNNAC	2 cut(s)	529, 700
Hpy99I	CGWCG	3 cut(s)	251, 335, 437
HpyAV	CCTTC	7 cut(s)	191, 228, 271, 313, 484, 490, 532
HpyCH4III	ACNGT	1 cut(s)	63
HpyCH4IV	ACGT	2 cut(s)	190, 564
HpyCH4V	TGCA	2 cut(s)	111, 279
HpyF3I	CTNAG	3 cut(s)	515, 579, 651
HpySE526I	ACGT	2 cut(s)	190, 564
Hsp92I	GRCGYC	4 cut(s)	42, 333, 632, 702
Hsp92II	CATG	3 cut(s)	205, 269, 709
HspAI	GCGC	2 cut(s)	457, 632
KasI	GGCGCC	1 cut(s)	631
KspAI	GTTAAC	1 cut(s)	529
KspI	CCGCGG	1 cut(s)	139
Kzo9I	GATC	1 cut(s)	676
LmnI	GCTCC	2 cut(s)	56, 541
Lsp1109I	GCAGC	2 cut(s)	382, 394
MaeI	CTAG	1 cut(s)	161
MaeII	ACGT	2 cut(s)	190, 564
MaeIII	GTNAC	1 cut(s)	191
MalI	GATC	1 cut(s)	678
MboI	GATC	1 cut(s)	676
MboII	GAAGA	4 cut(s)	160, 298, 496, 499
MhlI	GDGCHC	1 cut(s)	218
MluCI	AATT	4 cut(s)	164, 253, 402, 621
Mly113I	GGCGCC	1 cut(s)	632
MlyI	GAGTC	1 cut(s)	27
MmeI	TCCRAC	1 cut(s)	486
MseI	TTAA	2 cut(s)	528, 645
MspA1I	CMGCKG	2 cut(s)	138, 395
MspI	CCGG	3 cut(s)	196, 573, 629
MspR9I	CCNGG	3 cut(s)	197, 442, 574
Mva1269I	GAATGC	1 cut(s)	353
MvaI	CCWGG	1 cut(s)	442
MvnI	CGCG	3 cut(s)	138, 437, 462
NarI	GGCGCC	1 cut(s)	632
NciI	CCSGG	2 cut(s)	197, 574
NcoI	CCATGG	2 cut(s)	265, 705
NdeII	GATC	1 cut(s)	676
NlaIII	CATG	3 cut(s)	205, 269, 709
NlaIV	GGNNCC	3 cut(s)	52, 68, 633
NmeAIII	GCCGAG	1 cut(s)	478
NmuCI	GTSAC	1 cut(s)	191
PcsI	WCGNNNNNNNCGW	1 cut(s)	336
PctI	GAATGC	1 cut(s)	353
PfeI	GAWTC	1 cut(s)	548
PflFI	GACNNNGTC	1 cut(s)	197
PleI	GAGTC	1 cut(s)	27
PluTI	GGCGCC	1 cut(s)	635
PmaCI	CACGTG	1 cut(s)	191
PmlI	CACGTG	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	27
Ppu21I	YACGTR	1 cut(s)	191
Psp6I	CCWGG	1 cut(s)	440
PspCI	CACGTG	1 cut(s)	191
PspGI	CCWGG	1 cut(s)	440
PspN4I	GGNNCC	3 cut(s)	52, 68, 633
PspPI	GGNCC	2 cut(s)	382, 575
PsyI	GACNNNGTC	1 cut(s)	197
SacII	CCGCGG	1 cut(s)	139
SaqAI	TTAA	2 cut(s)	528, 645
Sau3AI	GATC	1 cut(s)	676
Sau96I	GGNCC	2 cut(s)	382, 575
SchI	GAGTC	1 cut(s)	27
ScrFI	CCNGG	3 cut(s)	197, 442, 574
SduI	GDGCHC	1 cut(s)	218
SetI	ASST	4 cut(s)	193, 287, 559, 567
SfoI	GGCGCC	1 cut(s)	633
Sfr303I	CCGCGG	1 cut(s)	139
SgrAI	CRCCGGYG	1 cut(s)	628
SgrBI	CCGCGG	1 cut(s)	139
Sse9I	AATT	4 cut(s)	164, 253, 402, 621
SspDI	GGCGCC	1 cut(s)	631
SspMI	CTAG	1 cut(s)	161
StyD4I	CCNGG	3 cut(s)	195, 440, 572
StyI	CCWWGG	3 cut(s)	265, 378, 705
TaaI	ACNGT	1 cut(s)	63
TaiI	ACGT	2 cut(s)	193, 567
TaqI	TCGA	4 cut(s)	171, 273, 363, 416
TasI	AATT	4 cut(s)	164, 253, 402, 621
TauI	GCSGC	8 cut(s)	42, 51, 141, 395, 413, 431, 440, 462
TfiI	GAWTC	1 cut(s)	548
Tru1I	TTAA	2 cut(s)	528, 645
Tru9I	TTAA	2 cut(s)	528, 645
TscAI	CASTG	1 cut(s)	679
TseFI	GTSAC	1 cut(s)	191
TseI	GCWGC	2 cut(s)	395, 407
Tsp45I	GTSAC	1 cut(s)	191
TspGWI	ACGGA	3 cut(s)	211, 461, 606
TspRI	CASTG	1 cut(s)	679
Tth111I	GACNNNGTC	1 cut(s)	197
XapI	RAATTY	2 cut(s)	164, 621
XbaI	TCTAGA	1 cut(s)	160
XspI	CTAG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.