Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0009933

Physical Location & Seq

Genomic Coordinates Reverse (-)

22224028 .. 22224438

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g29111.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGAAGAAGGCCGCCGCTGCTGCCAGGAGCGACGCCGAGCGCCGCGTCAAGGAGGCGGTGTCGGCGAAGAAGCGAGCCAAGGAGGCGCTGGAGGTGCTGGCGTTTCTAATGAGTAAAGAGAAGGAGGAGAAAGGTGTGATGAATTCTGATAGAGTGGAGCAGCAAAAGGCGAAATCAGAGACGACGAATCCGGCTGCAATGCAGGTTCTAGCCAGTTTGGCTACTTCTATGGGGACTGAGGGAACCAATGGGGTGCGACCGAATCAGTTGCAGAGAAATGATATGGAGGAAGGAGGTGATCGAGTCAAGGAAGGAGCTTCATCAGGTTTGGCATGTGCATTGTGTAGGATGATGATGATGATGATGATGCTCAGTTTCAGTTATTGCCTAGTTGGTGAGTCTCTTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

14.75

Weight (kDa)

8.82

Isoelectric Point (pI)

36.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17460
fragaria_vesca	FvH4_2g22261 FvH4_3g29111 FvH4_6g06731 FvH4_7g12701
malus_domestica	MD13G1139400.v1.1 MD16G1136300.v1.1
prunus_persica	Prupe.1G105300_v2.0.a1 Prupe.1G105300_v2.0.a1
pyrus_communis	pycom16g11990
rosa_chinensis	RchiOBHm_Chr4g0427521
rosa_laevigata	RLG00000007231
rosa_multiflora	Rmu_sc0001006.1_g000001 Rmu_sc0009627.1_g000002
rosa_roxburghii	Rroxscaffold_5G00369160
rosa_rugosa	Rorug04G0218300
rosa_samantha	Rh4AG274800 Rh4BG280600 Rh4CG295900 Rh4DG278000
rosa_wichuraiana	Rw4G023820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	193
AccII	CGCG	1 cut(s)	45
AciI	CCGC	4 cut(s)	12, 15, 43, 56
AcsI	RAATTY	1 cut(s)	142
AcyI	GRCGYC	1 cut(s)	33
AfiI	CCNNNNNNNGG	1 cut(s)	49
AjnI	CCWGG	1 cut(s)	23
AluBI	AGCT	1 cut(s)	317
AluI	AGCT	1 cut(s)	317
Alw26I	GTCTC	2 cut(s)	173, 405
AoxI	GGCC	1 cut(s)	9
ApeKI	GCWGC	4 cut(s)	17, 20, 160, 194
ApoI	RAATTY	1 cut(s)	142
AspLEI	GCGC	2 cut(s)	42, 88
AsuHPI	GGTGA	2 cut(s)	308, 407
BbvI	GCAGC	4 cut(s)	4, 7, 172, 181
BcgI	CGANNNNNNTGC	2 cut(s)	250, 284
BciT130I	CCWGG	1 cut(s)	25
BcoDI	GTCTC	2 cut(s)	173, 405
BfaI	CTAG	2 cut(s)	209, 389
BfoI	RGCGCY	2 cut(s)	43, 89
BfuAI	ACCTGC	1 cut(s)	193
BglI	GCCNNNNNGGC	2 cut(s)	83, 218
BisI	GCNGC	7 cut(s)	12, 15, 18, 21, 43, 161, 195
BlsI	GCNGC	7 cut(s)	13, 16, 19, 22, 44, 162, 196
Bme1390I	CCNGG	1 cut(s)	25
BmiI	GGNNCC	1 cut(s)	244
BmrFI	CCNGG	1 cut(s)	25
BmsI	GCATC	1 cut(s)	357
BpmI	CTGGAG	1 cut(s)	110
BsaHI	GRCGYC	1 cut(s)	33
BsaJI	CCNNGG	1 cut(s)	78
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
Bse1I	ACTGG	1 cut(s)	213
Bse3DI	GCAATG	1 cut(s)	204
BseBI	CCWGG	1 cut(s)	25
BseDI	CCNNGG	1 cut(s)	78
BseGI	GGATG	1 cut(s)	354
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseMI	GCAATG	1 cut(s)	204
BseMII	CTCAG	2 cut(s)	228, 385
BseNI	ACTGG	1 cut(s)	213
BseRI	GAGGAG	1 cut(s)	140
BseXI	GCAGC	4 cut(s)	4, 7, 172, 181
Bsh1236I	CGCG	1 cut(s)	45
Bsh1285I	CGRYCG	1 cut(s)	260
BshFI	GGCC	1 cut(s)	11
BsiEI	CGRYCG	1 cut(s)	260
BsiSI	CCGG	1 cut(s)	191
BslFI	GGGAC	1 cut(s)	247
BslI	CCNNNNNNNGG	1 cut(s)	49
BsmAI	GTCTC	2 cut(s)	173, 405
BsmBI	CGTCTC	1 cut(s)	173
BsmFI	GGGAC	1 cut(s)	247
BsnI	GGCC	1 cut(s)	11
Bsp143I	GATC	1 cut(s)	298
BspACI	CCGC	4 cut(s)	12, 15, 43, 56
BspANI	GGCC	1 cut(s)	11
BspCNI	CTCAG	2 cut(s)	229, 384
BspFNI	CGCG	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	244
BspMI	ACCTGC	1 cut(s)	193
BsrDI	GCAATG	1 cut(s)	204
BsrI	ACTGG	1 cut(s)	213
BssECI	CCNNGG	1 cut(s)	78
BssMI	GATC	1 cut(s)	298
BssNI	GRCGYC	1 cut(s)	33
BssT1I	CCWWGG	1 cut(s)	78
Bst2UI	CCWGG	1 cut(s)	25
BstACI	GRCGYC	1 cut(s)	33
BstC8I	GCNNGC	2 cut(s)	75, 99
BstDEI	CTNAG	3 cut(s)	237, 371, 408
BstF5I	GGATG	1 cut(s)	354
BstFNI	CGCG	1 cut(s)	45
BstH2I	RGCGCY	2 cut(s)	43, 89
BstHHI	GCGC	2 cut(s)	42, 88
BstKTI	GATC	1 cut(s)	301
BstMAI	GTCTC	2 cut(s)	173, 405
BstMBI	GATC	1 cut(s)	298
BstMCI	CGRYCG	1 cut(s)	260
BstMWI	GCNNNNNNNGC	6 cut(s)	17, 20, 62, 83, 94, 218
BstNI	CCWGG	1 cut(s)	25
BstNSI	RCATGY	1 cut(s)	336
BstSCI	CCNGG	1 cut(s)	23
BstUI	CGCG	1 cut(s)	45
BstV1I	GCAGC	4 cut(s)	4, 7, 172, 181
BsuRI	GGCC	1 cut(s)	11
BtsCI	GGATG	1 cut(s)	354
BveI	ACCTGC	1 cut(s)	193
Cac8I	GCNNGC	2 cut(s)	75, 99
CfoI	GCGC	2 cut(s)	42, 88
CseI	GACGC	2 cut(s)	34, 41
CviAII	CATG	1 cut(s)	333
CviJI	RGCY	6 cut(s)	11, 77, 194, 212, 221, 317
CviKI_1	RGCY	6 cut(s)	11, 77, 194, 212, 221, 317
DdeI	CTNAG	3 cut(s)	237, 371, 408
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
Eco130I	CCWWGG	1 cut(s)	78
EcoRI	GAATTC	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	23
EcoT14I	CCWWGG	1 cut(s)	78
ErhI	CCWWGG	1 cut(s)	78
Esp3I	CGTCTC	1 cut(s)	173
FaeI	CATG	1 cut(s)	336
FaiI	YATR	3 cut(s)	230, 284, 334
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	1 cut(s)	332
Fnu4HI	GCNGC	7 cut(s)	12, 15, 18, 21, 43, 161, 195
FokI	GGATG	1 cut(s)	361
Fsp4HI	GCNGC	7 cut(s)	12, 15, 18, 21, 43, 161, 195
FspBI	CTAG	2 cut(s)	209, 389
GlaI	GCGC	2 cut(s)	41, 87
GluI	GCNGC	7 cut(s)	12, 15, 18, 21, 43, 161, 195
GsuI	CTGGAG	1 cut(s)	110
HaeII	RGCGCY	2 cut(s)	43, 89
HaeIII	GGCC	1 cut(s)	11
HapII	CCGG	1 cut(s)	191
HgaI	GACGC	2 cut(s)	34, 41
HhaI	GCGC	2 cut(s)	42, 88
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	1 cut(s)	336
Hin6I	GCGC	2 cut(s)	40, 86
HinP1I	GCGC	2 cut(s)	40, 86
HinfI	GANTC	4 cut(s)	187, 262, 303, 398
HpaII	CCGG	1 cut(s)	191
HphI	GGTGA	2 cut(s)	308, 407
Hpy188I	TCNGA	2 cut(s)	148, 178
Hpy99I	CGWCG	2 cut(s)	35, 187
HpyAV	CCTTC	3 cut(s)	115, 284, 305
HpyCH4V	TGCA	4 cut(s)	197, 202, 271, 338
HpyF10VI	GCNNNNNNNGC	6 cut(s)	17, 20, 62, 83, 94, 218
HpyF3I	CTNAG	3 cut(s)	237, 371, 408
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	1 cut(s)	336
HspAI	GCGC	2 cut(s)	40, 86
Kzo9I	GATC	1 cut(s)	298
LmnI	GCTCC	3 cut(s)	27, 157, 314
LpnPI	CCDG	8 cut(s)	10, 37, 74, 83, 188, 204, 226, 309
Lsp1109I	GCAGC	4 cut(s)	4, 7, 172, 181
LweI	GCATC	1 cut(s)	357
MaeI	CTAG	2 cut(s)	209, 389
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MboII	GAAGA	2 cut(s)	16, 79
MluCI	AATT	1 cut(s)	142
MlyI	GAGTC	2 cut(s)	312, 407
MnlI	CCTC	7 cut(s)	46, 76, 85, 118, 232, 280, 287
MspA1I	CMGCKG	1 cut(s)	17
MspI	CCGG	1 cut(s)	191
MspR9I	CCNGG	1 cut(s)	25
MvaI	CCWGG	1 cut(s)	25
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	6 cut(s)	17, 20, 62, 83, 94, 218
NdeII	GATC	1 cut(s)	298
NlaIII	CATG	1 cut(s)	336
NlaIV	GGNNCC	1 cut(s)	244
NmeAIII	GCCGAG	1 cut(s)	61
NspI	RCATGY	1 cut(s)	336
PfeI	GAWTC	2 cut(s)	187, 262
PkrI	GCNGC	7 cut(s)	13, 16, 19, 22, 44, 162, 196
PleI	GAGTC	2 cut(s)	311, 406
PpsI	GAGTC	2 cut(s)	311, 406
Psp6I	CCWGG	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	23
PspN4I	GGNNCC	1 cut(s)	244
SatI	GCNGC	7 cut(s)	12, 15, 18, 21, 43, 161, 195
Sau3AI	GATC	1 cut(s)	298
SchI	GAGTC	2 cut(s)	312, 407
ScrFI	CCNGG	1 cut(s)	25
SetI	ASST	6 cut(s)	96, 136, 207, 298, 319, 328
SfaNI	GCATC	1 cut(s)	357
Sse9I	AATT	1 cut(s)	142
SsiI	CCGC	4 cut(s)	12, 15, 43, 56
SspMI	CTAG	2 cut(s)	209, 389
StyD4I	CCNGG	1 cut(s)	23
StyI	CCWWGG	1 cut(s)	78
TaqI	TCGA	1 cut(s)	301
TaqII	GACCGA	1 cut(s)	274
TasI	AATT	1 cut(s)	142
TauI	GCSGC	3 cut(s)	14, 17, 45
TfiI	GAWTC	2 cut(s)	187, 262
TseI	GCWGC	4 cut(s)	17, 20, 160, 194
TspDTI	ATGAA	3 cut(s)	17, 155, 309
XapI	RAATTY	1 cut(s)	142
XceI	RCATGY	1 cut(s)	336
XcmI	CCANNNNNNNNNTGG	1 cut(s)	85
XspI	CTAG	2 cut(s)	209, 389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.