Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0009933

Physical Location & Seq

Genomic Coordinates Forward (+)

14765314 .. 14766057

Gene Structure 744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007231

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCGATGAAGCGAGACCTCCCGGAATCCGATAAGCGCCTCTGCCGCGGCTGCGGCTCCTCCGAGCGGTGGCTCCTCCACTACATCCGCCTCCGCGGATCCTTCCAGCGTCTCTGCACCAACTGCGTCCTCAAGAACCACCCCGGCGTCTTCTGCCCCGTCTGCCTCGTCGTCTTCGACTTCGACCACCCCCCGCCGGCCCGTGACCGCGTCATGTGCGTCAAGTGCCCCTCCATCGCCCACAACGACTGCGCCAACTGCGCCTCCTTCGAGTGCCCTCCCTGCTCCCAATCCGCCTTCTCCTTCTTCAACTTCGACCGCAACACCGGCAGCGCCGACGCGGCGGCGATGCTTCTCGGGAAGGAATCCGCCAAGGCCTTCGTGGCGGCGGCGAAAATCGCGGCCAATTCGATGAAGAAGGCCGCCGCCGCTGCCAGGATCGACGCCGAGCGACGCGTCAAGGAGGCGGTCTCGGCGAAGAAGAGGGCGAGGGAGGCGCTGGAGGTGCTGGCGTTTCTGGTGAATAAAGAAAAGGAAGAGAAGGATTCGAAAGGCGGAGGAGAGCAGAATTCGGGTAGGGTGGAGCACCAGAAGCAGAAATCGGAGACGAATCCCGGTGCAATGCAAGTTCTGGCCAACCTTGCTACTTCTATAGCGACTGAGGGAACCAATGGGGTGCGAGGTAATCAATTGCAGACCAATGATATGGAGGAAGGAGGTGATCAAGTCAAGGAAGGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

248

Amino Acids

26.81

Weight (kDa)

8.71

Isoelectric Point (pI)

39.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17460
fragaria_vesca	FvH4_2g22261 FvH4_3g29111 FvH4_6g06731 FvH4_7g12701
malus_domestica	MD13G1139400.v1.1 MD16G1136300.v1.1
prunus_persica	Prupe.1G105300_v2.0.a1 Prupe.1G105300_v2.0.a1
pyrus_communis	pycom16g11990
rosa_chinensis	RchiOBHm_Chr4g0427521
rosa_laevigata	RLG00000007231
rosa_multiflora	Rmu_sc0001006.1_g000001 Rmu_sc0009627.1_g000002
rosa_roxburghii	Rroxscaffold_5G00369160
rosa_rugosa	Rorug04G0218300
rosa_samantha	Rh4AG274800 Rh4BG280600 Rh4CG295900 Rh4DG278000
rosa_wichuraiana	Rw4G023820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	67
AccII	CGCG	6 cut(s)	48, 96, 210, 341, 401, 456
AclWI	GGATC	3 cut(s)	93, 106, 446
AcoI	YGGCCR	2 cut(s)	402, 633
AcsI	RAATTY	1 cut(s)	568
AcyI	GRCGYC	2 cut(s)	147, 444
AfiI	CCNNNNNNNGG	4 cut(s)	66, 69, 196, 435
AflIII	ACRYGT	1 cut(s)	454
AgsI	TTSAA	1 cut(s)	310
AjnI	CCWGG	1 cut(s)	434
AluBI	AGCT	1 cut(s)	740
AluI	AGCT	1 cut(s)	740
Alw21I	GWGCWC	1 cut(s)	588
Alw26I	GTCTC	4 cut(s)	9, 116, 475, 599
AlwI	GGATC	3 cut(s)	93, 106, 446
Ama87I	CYCGRG	1 cut(s)	356
AoxI	GGCC	5 cut(s)	198, 375, 402, 420, 633
ApeKI	GCWGC	3 cut(s)	51, 330, 431
ApoI	RAATTY	1 cut(s)	568
AspLEI	GCGC	5 cut(s)	39, 254, 263, 335, 499
AspS9I	GGNCC	1 cut(s)	199
AsuC2I	CCSGG	3 cut(s)	23, 144, 615
AsuHPI	GGTGA	2 cut(s)	532, 731
AsuII	TTCGAA	1 cut(s)	548
AvaI	CYCGRG	1 cut(s)	356
BaeGI	GKGCMC	2 cut(s)	230, 278
BalI	TGGCCA	1 cut(s)	635
BamHI	GGATCC	1 cut(s)	98
BbsI	GAAGAC	2 cut(s)	142, 166
Bbv12I	GWGCWC	1 cut(s)	588
BbvI	GCAGC	3 cut(s)	38, 342, 418
BccI	CCATC	1 cut(s)	242
BciT130I	CCWGG	1 cut(s)	436
BclI	TGATCA	1 cut(s)	721
BcnI	CCSGG	3 cut(s)	23, 144, 615
BcoDI	GTCTC	4 cut(s)	9, 116, 475, 599
BfmI	CTRYAG	1 cut(s)	651
BfoI	RGCGCY	3 cut(s)	40, 336, 500
BglI	GCCNNNNNGGC	2 cut(s)	341, 383
Bme1390I	CCNGG	4 cut(s)	23, 144, 436, 615
BmeT110I	CYCGRG	1 cut(s)	356
BmgT120I	GGNCC	1 cut(s)	199
BmiI	GGNNCC	4 cut(s)	58, 74, 100, 667
BmrFI	CCNGG	4 cut(s)	23, 144, 436, 615
BmsI	GCATC	1 cut(s)	339
BpiI	GAAGAC	2 cut(s)	142, 166
BplI	GAGNNNNNCTC	2 cut(s)	455, 487
BpmI	CTGGAG	1 cut(s)	521
Bpu14I	TTCGAA	1 cut(s)	548
BpuEI	CTTGAG	1 cut(s)	116
BpuMI	CCSGG	3 cut(s)	23, 144, 615
BsaHI	GRCGYC	2 cut(s)	147, 444
BsaI	GGTCTC	2 cut(s)	9, 475
BsaJI	CCNNGG	4 cut(s)	46, 94, 142, 372
BsaXI	ACNNNNNCTCC	2 cut(s)	248, 278
Bsc4I	CCNNNNNNNGG	4 cut(s)	66, 69, 196, 435
Bse118I	RCCGGY	2 cut(s)	196, 326
Bse3DI	GCAATG	1 cut(s)	627
BseBI	CCWGG	1 cut(s)	436
BseDI	CCNNGG	4 cut(s)	46, 94, 142, 372
BseGI	GGATG	1 cut(s)	84
BseLI	CCNNNNNNNGG	4 cut(s)	66, 69, 196, 435
BseMI	GCAATG	1 cut(s)	627
BseMII	CTCAG	1 cut(s)	651
BseRI	GAGGAG	3 cut(s)	49, 65, 573
BseSI	GKGCMC	2 cut(s)	230, 278
BseXI	GCAGC	3 cut(s)	38, 342, 418
BsgI	GTGCAG	1 cut(s)	100
Bsh1236I	CGCG	6 cut(s)	48, 96, 210, 341, 401, 456
Bsh1285I	CGRYCG	1 cut(s)	319
BshFI	GGCC	5 cut(s)	200, 377, 404, 422, 635
BsiEI	CGRYCG	1 cut(s)	319
BsiHKAI	GWGCWC	1 cut(s)	588
BsiHKCI	CYCGRG	1 cut(s)	356
BsiSI	CCGG	5 cut(s)	23, 144, 197, 327, 615
BslI	CCNNNNNNNGG	4 cut(s)	66, 69, 196, 435
BsmAI	GTCTC	4 cut(s)	9, 116, 475, 599
BsmBI	CGTCTC	2 cut(s)	116, 599
BsnI	GGCC	5 cut(s)	200, 377, 404, 422, 635
Bso31I	GGTCTC	2 cut(s)	9, 475
BsoBI	CYCGRG	1 cut(s)	356
Bsp119I	TTCGAA	1 cut(s)	548
Bsp1286I	GDGCHC	3 cut(s)	230, 278, 588
Bsp143I	GATC	3 cut(s)	98, 438, 721
BspANI	GGCC	5 cut(s)	200, 377, 404, 422, 635
BspCNI	CTCAG	1 cut(s)	652
BspFNI	CGCG	6 cut(s)	48, 96, 210, 341, 401, 456
BspLI	GGNNCC	4 cut(s)	58, 74, 100, 667
BspPI	GGATC	3 cut(s)	93, 106, 446
BspT104I	TTCGAA	1 cut(s)	548
BspTNI	GGTCTC	2 cut(s)	9, 475
BsrBI	CCGCTC	1 cut(s)	67
BsrDI	GCAATG	1 cut(s)	627
BsrFI	RCCGGY	2 cut(s)	196, 326
BssAI	RCCGGY	2 cut(s)	196, 326
BssECI	CCNNGG	4 cut(s)	46, 94, 142, 372
BssMI	GATC	3 cut(s)	98, 438, 721
BssNI	GRCGYC	2 cut(s)	147, 444
BssT1I	CCWWGG	1 cut(s)	372
Bst2UI	CCWGG	1 cut(s)	436
Bst6I	CTCTTC	2 cut(s)	476, 531
BstACI	GRCGYC	2 cut(s)	147, 444
BstAPI	GCANNNNNTGC	1 cut(s)	123
BstBI	TTCGAA	1 cut(s)	548
BstC8I	GCNNGC	2 cut(s)	198, 510
BstDEI	CTNAG	1 cut(s)	660
BstDSI	CCRYGG	2 cut(s)	46, 94
BstF5I	GGATG	1 cut(s)	84
BstFNI	CGCG	6 cut(s)	48, 96, 210, 341, 401, 456
BstH2I	RGCGCY	3 cut(s)	40, 336, 500
BstHHI	GCGC	5 cut(s)	39, 254, 263, 335, 499
BstKTI	GATC	3 cut(s)	101, 441, 724
BstMAI	GTCTC	4 cut(s)	9, 116, 475, 599
BstMBI	GATC	3 cut(s)	98, 438, 721
BstMCI	CGRYCG	1 cut(s)	319
BstNI	CCWGG	1 cut(s)	436
BstSCI	CCNGG	4 cut(s)	21, 142, 434, 613
BstSFI	CTRYAG	1 cut(s)	651
BstSLI	GKGCMC	2 cut(s)	230, 278
BstUI	CGCG	6 cut(s)	48, 96, 210, 341, 401, 456
BstV1I	GCAGC	3 cut(s)	38, 342, 418
BstV2I	GAAGAC	2 cut(s)	142, 166
BstX2I	RGATCY	1 cut(s)	98
BstXI	CCANNNNNNTGG	1 cut(s)	706
BstYI	RGATCY	1 cut(s)	98
BsuRI	GGCC	5 cut(s)	200, 377, 404, 422, 635
BtgI	CCRYGG	2 cut(s)	46, 94
BtgZI	GCGATG	3 cut(s)	20, 220, 362
BtsCI	GGATG	1 cut(s)	84
Cac8I	GCNNGC	2 cut(s)	198, 510
CfoI	GCGC	5 cut(s)	39, 254, 263, 335, 499
Cfr10I	RCCGGY	2 cut(s)	196, 326
Cfr13I	GGNCC	1 cut(s)	199
Cfr42I	CCGCGG	2 cut(s)	49, 97
CseI	GACGC	9 cut(s)	98, 115, 136, 199, 208, 347, 445, 452, 462
CviAII	CATG	1 cut(s)	214
CviJI	RGCY	9 cut(s)	51, 57, 73, 200, 377, 404, 422, 635, 740
CviKI_1	RGCY	9 cut(s)	51, 57, 73, 200, 377, 404, 422, 635, 740
DdeI	CTNAG	1 cut(s)	660
DpnI	GATC	3 cut(s)	100, 440, 723
DpnII	GATC	3 cut(s)	98, 438, 721
EaeI	YGGCCR	2 cut(s)	402, 633
Eam1104I	CTCTTC	2 cut(s)	476, 531
EarI	CTCTTC	2 cut(s)	476, 531
EciI	GGCGGA	4 cut(s)	77, 283, 358, 570
Eco130I	CCWWGG	1 cut(s)	372
Eco147I	AGGCCT	1 cut(s)	377
Eco31I	GGTCTC	2 cut(s)	9, 475
Eco88I	CYCGRG	1 cut(s)	356
EcoRI	GAATTC	1 cut(s)	568
EcoRII	CCWGG	1 cut(s)	434
EcoT14I	CCWWGG	1 cut(s)	372
ErhI	CCWWGG	1 cut(s)	372
Esp3I	CGTCTC	2 cut(s)	116, 599
FaeI	CATG	1 cut(s)	217
FaiI	YATR	3 cut(s)	215, 653, 707
FatI	CATG	1 cut(s)	213
FauI	CCCGC	1 cut(s)	201
FbaI	TGATCA	1 cut(s)	721
FokI	GGATG	1 cut(s)	71
GlaI	GCGC	5 cut(s)	38, 253, 262, 334, 498
GsuI	CTGGAG	1 cut(s)	521
HaeII	RGCGCY	3 cut(s)	40, 336, 500
HaeIII	GGCC	5 cut(s)	200, 377, 404, 422, 635
HapII	CCGG	5 cut(s)	23, 144, 197, 327, 615
HgaI	GACGC	9 cut(s)	98, 115, 136, 199, 208, 347, 445, 452, 462
HhaI	GCGC	5 cut(s)	39, 254, 263, 335, 499
Hin1I	GRCGYC	2 cut(s)	147, 444
Hin1II	CATG	1 cut(s)	217
Hin6I	GCGC	5 cut(s)	37, 252, 261, 333, 497
HinP1I	GCGC	5 cut(s)	37, 252, 261, 333, 497
HinfI	GANTC	4 cut(s)	26, 365, 545, 610
HpaII	CCGG	5 cut(s)	23, 144, 197, 327, 615
HphI	GGTGA	2 cut(s)	532, 731
Hpy188I	TCNGA	3 cut(s)	31, 64, 604
Hpy188III	TCNNGA	2 cut(s)	133, 358
Hpy99I	CGWCG	4 cut(s)	173, 341, 446, 456
HpyCH4V	TGCA	4 cut(s)	117, 620, 625, 694
HpyF3I	CTNAG	1 cut(s)	660
Hsp92I	GRCGYC	2 cut(s)	147, 444
Hsp92II	CATG	1 cut(s)	217
HspAI	GCGC	5 cut(s)	37, 252, 261, 333, 497
KroI	GCCGGC	1 cut(s)	196
KroNI	GCCGGC	1 cut(s)	198
Ksp22I	TGATCA	1 cut(s)	721
KspI	CCGCGG	2 cut(s)	49, 97
Kzo9I	GATC	3 cut(s)	98, 438, 721
LmnI	GCTCC	5 cut(s)	62, 78, 290, 583, 737
Lsp1109I	GCAGC	3 cut(s)	38, 342, 418
LweI	GCATC	1 cut(s)	339
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	3 cut(s)	100, 440, 723
MbiI	CCGCTC	1 cut(s)	67
MboI	GATC	3 cut(s)	98, 438, 721
MboII	GAAGA	7 cut(s)	142, 166, 298, 427, 490, 493, 548
MfeI	CAATTG	1 cut(s)	689
MflI	RGATCY	1 cut(s)	98
MhlI	GDGCHC	3 cut(s)	230, 278, 588
MlsI	TGGCCA	1 cut(s)	635
MluCI	AATT	3 cut(s)	406, 568, 689
MluI	ACGCGT	1 cut(s)	454
MluNI	TGGCCA	1 cut(s)	635
Mox20I	TGGCCA	1 cut(s)	635
MroNI	GCCGGC	1 cut(s)	196
MscI	TGGCCA	1 cut(s)	635
Msp20I	TGGCCA	1 cut(s)	635
MspA1I	CMGCKG	3 cut(s)	48, 96, 431
MspI	CCGG	5 cut(s)	23, 144, 197, 327, 615
MspR9I	CCNGG	4 cut(s)	23, 144, 436, 615
MunI	CAATTG	1 cut(s)	689
MvaI	CCWGG	1 cut(s)	436
MvnI	CGCG	6 cut(s)	48, 96, 210, 341, 401, 456
NaeI	GCCGGC	1 cut(s)	198
NciI	CCSGG	3 cut(s)	23, 144, 615
NdeII	GATC	3 cut(s)	98, 438, 721
NgoMIV	GCCGGC	1 cut(s)	196
NlaIII	CATG	1 cut(s)	217
NlaIV	GGNNCC	4 cut(s)	58, 74, 100, 667
NmeAIII	GCCGAG	2 cut(s)	452, 472
NmuCI	GTSAC	1 cut(s)	203
NspV	TTCGAA	1 cut(s)	548
PceI	AGGCCT	1 cut(s)	377
PcsI	WCGNNNNNNNCGW	2 cut(s)	174, 243
PdiI	GCCGGC	1 cut(s)	198
PfeI	GAWTC	4 cut(s)	26, 365, 545, 610
PflFI	GACNNNGTC	1 cut(s)	209
PfoI	TCCNGGA	1 cut(s)	21
Psp6I	CCWGG	1 cut(s)	434
PspGI	CCWGG	1 cut(s)	434
PspN4I	GGNNCC	4 cut(s)	58, 74, 100, 667
PspPI	GGNCC	1 cut(s)	199
PsuI	RGATCY	1 cut(s)	98
PsyI	GACNNNGTC	1 cut(s)	209
SacII	CCGCGG	2 cut(s)	49, 97
Sau3AI	GATC	3 cut(s)	98, 438, 721
Sau96I	GGNCC	1 cut(s)	199
ScrFI	CCNGG	4 cut(s)	23, 144, 436, 615
SduI	GDGCHC	3 cut(s)	230, 278, 588
SetI	ASST	6 cut(s)	21, 507, 642, 685, 721, 742
SfaNI	GCATC	1 cut(s)	339
SfcI	CTRYAG	1 cut(s)	651
Sfr303I	CCGCGG	2 cut(s)	49, 97
SfuI	TTCGAA	1 cut(s)	548
SgrBI	CCGCGG	2 cut(s)	49, 97
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	3 cut(s)	406, 568, 689
SseBI	AGGCCT	1 cut(s)	377
StuI	AGGCCT	1 cut(s)	377
StyD4I	CCNGG	4 cut(s)	21, 142, 434, 613
StyI	CCWWGG	1 cut(s)	372
TaqI	TCGA	7 cut(s)	177, 183, 270, 315, 410, 441, 548
TasI	AATT	3 cut(s)	406, 568, 689
TfiI	GAWTC	4 cut(s)	26, 365, 545, 610
TseFI	GTSAC	1 cut(s)	203
TseI	GCWGC	3 cut(s)	51, 330, 431
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	2 cut(s)	23, 428
Tth111I	GACNNNGTC	1 cut(s)	209
XapI	RAATTY	1 cut(s)	568
XcmI	CCANNNNNNNNNTGG	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.