Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0009933

Physical Location & Seq

Genomic Coordinates Reverse (-)

59099886 .. 59100632

Gene Structure 747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG274800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCGATGAAGCGAGACCTCCCGGAATCCGATAAGCGCCTCTGCCGCGGCTGCGGCTCCTCCGAGCGGTGGCTCCTCCACTACATCCGCCTCCGCGGAACCTTCCAGCGTCTCTGCACCAACTGCGTCCTCAAGAACCACCCCGGCCTCTTCTGCCCCGTCTGCCTCGACGTCTTCGACTTCGACCACCCCCCGCAGCCGCGTGACCGCGTCATGTGCGTCAAGTGCCCCTCCATCGCCCACAACGACTGCGCCAACTGCGCCTCCTTCGAGTGCCCTCCCTGCTCCCAATCCGCCTTCTCCTTCTTCAACTTCGACCGCAACAACGCCGGCGGCTCCGACGCGGCGGCGATGCTCCTCGGGAAGGAATCCGCCAAGGCCTTCAGGGCGAGGGAGGCGCTGGAGGTGCTGGCGTTTCTGGTGAATAAAGAAAAGGAGGAGAAGGATTCGAAAGGCGGAGGAGAGCTGAATTCGGGTAGAGTGGAGCACCAGAAGCAGAAATCGGAGACGAATCCCGGTGCAATGCAAGTTCTGGCCAACCTTGCTACTTCTATGGCGACTGAGGGAACCAATGGGGTGCGAGATAATCAATTGCAGACCAATGATATGGAGGAAGGAGGTGATCAAGTCAAGGAAGGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

214

Amino Acids

23.57

Weight (kDa)

6.22

Isoelectric Point (pI)

42.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17460
fragaria_vesca	FvH4_2g22261 FvH4_3g29111 FvH4_6g06731 FvH4_7g12701
malus_domestica	MD13G1139400.v1.1 MD16G1136300.v1.1
prunus_persica	Prupe.1G105300_v2.0.a1 Prupe.1G105300_v2.0.a1
pyrus_communis	pycom16g11990
rosa_chinensis	RchiOBHm_Chr4g0427521
rosa_laevigata	RLG00000007231
rosa_multiflora	Rmu_sc0001006.1_g000001 Rmu_sc0009627.1_g000002
rosa_roxburghii	Rroxscaffold_5G00369160
rosa_rugosa	Rorug04G0218300
rosa_samantha	Rh4AG274800 Rh4BG280600 Rh4CG295900 Rh4DG278000
rosa_wichuraiana	Rw4G023820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	174
AccBSI	CCGCTC	1 cut(s)	67
AccII	CGCG	5 cut(s)	48, 96, 202, 210, 344
AcoI	YGGCCR	1 cut(s)	534
AcsI	RAATTY	1 cut(s)	469
AcuI	CTGAAG	1 cut(s)	367
AcyI	GRCGYC	1 cut(s)	171
AfiI	CCNNNNNNNGG	3 cut(s)	66, 69, 364
AgsI	TTSAA	1 cut(s)	310
AluBI	AGCT	2 cut(s)	466, 641
AluI	AGCT	2 cut(s)	466, 641
Alw21I	GWGCWC	1 cut(s)	489
Alw26I	GTCTC	3 cut(s)	9, 116, 500
Ama87I	CYCGRG	1 cut(s)	359
AoxI	GGCC	3 cut(s)	145, 378, 534
ApeKI	GCWGC	2 cut(s)	51, 196
ApoI	RAATTY	1 cut(s)	469
AspLEI	GCGC	4 cut(s)	39, 254, 263, 400
AsuC2I	CCSGG	3 cut(s)	23, 144, 516
AsuHPI	GGTGA	2 cut(s)	433, 632
AsuII	TTCGAA	1 cut(s)	449
AvaI	CYCGRG	1 cut(s)	359
BaeGI	GKGCMC	2 cut(s)	230, 278
BalI	TGGCCA	1 cut(s)	536
BbsI	GAAGAC	1 cut(s)	166
Bbv12I	GWGCWC	1 cut(s)	489
BbvI	GCAGC	2 cut(s)	38, 208
BccI	CCATC	1 cut(s)	242
BclI	TGATCA	1 cut(s)	622
BcnI	CCSGG	3 cut(s)	23, 144, 516
BcoDI	GTCTC	3 cut(s)	9, 116, 500
BfoI	RGCGCY	2 cut(s)	40, 401
BglI	GCCNNNNNGGC	1 cut(s)	386
BisI	GCNGC	9 cut(s)	46, 49, 52, 55, 197, 200, 334, 345, 348
BlsI	GCNGC	9 cut(s)	47, 50, 53, 56, 198, 201, 335, 346, 349
Bme1390I	CCNGG	3 cut(s)	23, 144, 516
BmeT110I	CYCGRG	1 cut(s)	359
BmiI	GGNNCC	5 cut(s)	58, 74, 100, 337, 568
BmrFI	CCNGG	3 cut(s)	23, 144, 516
BmsI	GCATC	1 cut(s)	342
BpiI	GAAGAC	1 cut(s)	166
BpmI	CTGGAG	1 cut(s)	422
Bpu14I	TTCGAA	1 cut(s)	449
BpuEI	CTTGAG	1 cut(s)	116
BpuMI	CCSGG	3 cut(s)	23, 144, 516
BsaHI	GRCGYC	1 cut(s)	171
BsaI	GGTCTC	1 cut(s)	9
BsaJI	CCNNGG	5 cut(s)	46, 94, 142, 358, 375
BsaXI	ACNNNNNCTCC	2 cut(s)	248, 278
Bsc4I	CCNNNNNNNGG	3 cut(s)	66, 69, 364
Bse118I	RCCGGY	1 cut(s)	329
Bse3DI	GCAATG	1 cut(s)	528
BseDI	CCNNGG	5 cut(s)	46, 94, 142, 358, 375
BseGI	GGATG	1 cut(s)	84
BseLI	CCNNNNNNNGG	3 cut(s)	66, 69, 364
BseMI	GCAATG	1 cut(s)	528
BseMII	CTCAG	1 cut(s)	552
BseRI	GAGGAG	5 cut(s)	49, 65, 347, 452, 474
BseSI	GKGCMC	2 cut(s)	230, 278
BseXI	GCAGC	2 cut(s)	38, 208
BsgI	GTGCAG	1 cut(s)	100
Bsh1236I	CGCG	5 cut(s)	48, 96, 202, 210, 344
Bsh1285I	CGRYCG	1 cut(s)	319
BshFI	GGCC	3 cut(s)	147, 380, 536
BsiEI	CGRYCG	1 cut(s)	319
BsiHKAI	GWGCWC	1 cut(s)	489
BsiHKCI	CYCGRG	1 cut(s)	359
BsiSI	CCGG	4 cut(s)	23, 144, 330, 516
BslI	CCNNNNNNNGG	3 cut(s)	66, 69, 364
BsmAI	GTCTC	3 cut(s)	9, 116, 500
BsmBI	CGTCTC	2 cut(s)	116, 500
BsnI	GGCC	3 cut(s)	147, 380, 536
Bso31I	GGTCTC	1 cut(s)	9
BsoBI	CYCGRG	1 cut(s)	359
Bsp119I	TTCGAA	1 cut(s)	449
Bsp1286I	GDGCHC	3 cut(s)	230, 278, 489
Bsp143I	GATC	1 cut(s)	622
BspANI	GGCC	3 cut(s)	147, 380, 536
BspCNI	CTCAG	1 cut(s)	553
BspFNI	CGCG	5 cut(s)	48, 96, 202, 210, 344
BspLI	GGNNCC	5 cut(s)	58, 74, 100, 337, 568
BspT104I	TTCGAA	1 cut(s)	449
BspTNI	GGTCTC	1 cut(s)	9
BsrBI	CCGCTC	1 cut(s)	67
BsrDI	GCAATG	1 cut(s)	528
BsrFI	RCCGGY	1 cut(s)	329
BssAI	RCCGGY	1 cut(s)	329
BssECI	CCNNGG	5 cut(s)	46, 94, 142, 358, 375
BssMI	GATC	1 cut(s)	622
BssNI	GRCGYC	1 cut(s)	171
BssT1I	CCWWGG	1 cut(s)	375
Bst6I	CTCTTC	1 cut(s)	155
BstACI	GRCGYC	1 cut(s)	171
BstAPI	GCANNNNNTGC	1 cut(s)	123
BstBI	TTCGAA	1 cut(s)	449
BstC8I	GCNNGC	2 cut(s)	331, 411
BstDEI	CTNAG	1 cut(s)	561
BstDSI	CCRYGG	2 cut(s)	46, 94
BstENI	CCTNNNNNAGG	1 cut(s)	362
BstF5I	GGATG	1 cut(s)	84
BstFNI	CGCG	5 cut(s)	48, 96, 202, 210, 344
BstH2I	RGCGCY	2 cut(s)	40, 401
BstHHI	GCGC	4 cut(s)	39, 254, 263, 400
BstKTI	GATC	1 cut(s)	625
BstMAI	GTCTC	3 cut(s)	9, 116, 500
BstMBI	GATC	1 cut(s)	622
BstMCI	CGRYCG	1 cut(s)	319
BstSCI	CCNGG	3 cut(s)	21, 142, 514
BstSLI	GKGCMC	2 cut(s)	230, 278
BstUI	CGCG	5 cut(s)	48, 96, 202, 210, 344
BstV1I	GCAGC	2 cut(s)	38, 208
BstV2I	GAAGAC	1 cut(s)	166
BstXI	CCANNNNNNTGG	1 cut(s)	607
BsuRI	GGCC	3 cut(s)	147, 380, 536
BtgI	CCRYGG	2 cut(s)	46, 94
BtgZI	GCGATG	3 cut(s)	20, 220, 365
BtsCI	GGATG	1 cut(s)	84
Cac8I	GCNNGC	2 cut(s)	331, 411
CfoI	GCGC	4 cut(s)	39, 254, 263, 400
Cfr10I	RCCGGY	1 cut(s)	329
Cfr42I	CCGCGG	2 cut(s)	49, 97
CseI	GACGC	5 cut(s)	98, 115, 199, 208, 350
CviAII	CATG	1 cut(s)	214
DdeI	CTNAG	1 cut(s)	561
DpnI	GATC	1 cut(s)	624
DpnII	GATC	1 cut(s)	622
EaeI	YGGCCR	1 cut(s)	534
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
EciI	GGCGGA	4 cut(s)	77, 283, 361, 471
Eco130I	CCWWGG	1 cut(s)	375
Eco147I	AGGCCT	1 cut(s)	380
Eco31I	GGTCTC	1 cut(s)	9
Eco57I	CTGAAG	1 cut(s)	367
Eco88I	CYCGRG	1 cut(s)	359
EcoNI	CCTNNNNNAGG	1 cut(s)	362
EcoRI	GAATTC	1 cut(s)	469
EcoT14I	CCWWGG	1 cut(s)	375
ErhI	CCWWGG	1 cut(s)	375
Esp3I	CGTCTC	2 cut(s)	116, 500
FaeI	CATG	1 cut(s)	217
FaiI	YATR	3 cut(s)	215, 554, 608
FatI	CATG	1 cut(s)	213
FauI	CCCGC	1 cut(s)	201
FbaI	TGATCA	1 cut(s)	622
Fnu4HI	GCNGC	9 cut(s)	46, 49, 52, 55, 197, 200, 334, 345, 348
FokI	GGATG	1 cut(s)	71
Fsp4HI	GCNGC	9 cut(s)	46, 49, 52, 55, 197, 200, 334, 345, 348
GlaI	GCGC	4 cut(s)	38, 253, 262, 399
GluI	GCNGC	9 cut(s)	46, 49, 52, 55, 197, 200, 334, 345, 348
GsuI	CTGGAG	1 cut(s)	422
HaeII	RGCGCY	2 cut(s)	40, 401
HaeIII	GGCC	3 cut(s)	147, 380, 536
HapII	CCGG	4 cut(s)	23, 144, 330, 516
HgaI	GACGC	5 cut(s)	98, 115, 199, 208, 350
HhaI	GCGC	4 cut(s)	39, 254, 263, 400
Hin1I	GRCGYC	1 cut(s)	171
Hin1II	CATG	1 cut(s)	217
Hin6I	GCGC	4 cut(s)	37, 252, 261, 398
HinP1I	GCGC	4 cut(s)	37, 252, 261, 398
HinfI	GANTC	4 cut(s)	26, 368, 446, 511
HpaII	CCGG	4 cut(s)	23, 144, 330, 516
HphI	GGTGA	2 cut(s)	433, 632
Hpy188I	TCNGA	4 cut(s)	31, 64, 340, 505
Hpy188III	TCNNGA	2 cut(s)	133, 361
Hpy99I	CGWCG	2 cut(s)	173, 344
HpyAV	CCTTC	9 cut(s)	112, 277, 307, 313, 358, 391, 436, 608, 629
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	4 cut(s)	117, 521, 526, 595
HpyF3I	CTNAG	1 cut(s)	561
HpySE526I	ACGT	1 cut(s)	171
Hsp92I	GRCGYC	1 cut(s)	171
Hsp92II	CATG	1 cut(s)	217
HspAI	GCGC	4 cut(s)	37, 252, 261, 398
KroI	GCCGGC	1 cut(s)	329
KroNI	GCCGGC	1 cut(s)	331
Ksp22I	TGATCA	1 cut(s)	622
KspI	CCGCGG	2 cut(s)	49, 97
Kzo9I	GATC	1 cut(s)	622
LmnI	GCTCC	7 cut(s)	62, 78, 290, 341, 360, 484, 638
Lsp1109I	GCAGC	2 cut(s)	38, 208
LweI	GCATC	1 cut(s)	342
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	1 cut(s)	624
MbiI	CCGCTC	1 cut(s)	67
MboI	GATC	1 cut(s)	622
MboII	GAAGA	3 cut(s)	142, 166, 298
MfeI	CAATTG	1 cut(s)	590
MhlI	GDGCHC	3 cut(s)	230, 278, 489
MlsI	TGGCCA	1 cut(s)	536
MluCI	AATT	2 cut(s)	469, 590
MluNI	TGGCCA	1 cut(s)	536
MmeI	TCCRAC	1 cut(s)	363
Mox20I	TGGCCA	1 cut(s)	536
MreI	CGCCGGCG	1 cut(s)	329
MroNI	GCCGGC	1 cut(s)	329
MscI	TGGCCA	1 cut(s)	536
Msp20I	TGGCCA	1 cut(s)	536
MspA1I	CMGCKG	2 cut(s)	48, 96
MspI	CCGG	4 cut(s)	23, 144, 330, 516
MspR9I	CCNGG	3 cut(s)	23, 144, 516
MunI	CAATTG	1 cut(s)	590
MvnI	CGCG	5 cut(s)	48, 96, 202, 210, 344
NaeI	GCCGGC	1 cut(s)	331
NciI	CCSGG	3 cut(s)	23, 144, 516
NdeII	GATC	1 cut(s)	622
NgoMIV	GCCGGC	1 cut(s)	329
NlaIII	CATG	1 cut(s)	217
NlaIV	GGNNCC	5 cut(s)	58, 74, 100, 337, 568
NmuCI	GTSAC	1 cut(s)	203
NspV	TTCGAA	1 cut(s)	449
PceI	AGGCCT	1 cut(s)	380
PcsI	WCGNNNNNNNCGW	2 cut(s)	174, 243
PdiI	GCCGGC	1 cut(s)	331
PfeI	GAWTC	4 cut(s)	26, 368, 446, 511
PflFI	GACNNNGTC	1 cut(s)	209
PfoI	TCCNGGA	1 cut(s)	21
PkrI	GCNGC	9 cut(s)	47, 50, 53, 56, 198, 201, 335, 346, 349
PspN4I	GGNNCC	5 cut(s)	58, 74, 100, 337, 568
PsyI	GACNNNGTC	1 cut(s)	209
SacII	CCGCGG	2 cut(s)	49, 97
SatI	GCNGC	9 cut(s)	46, 49, 52, 55, 197, 200, 334, 345, 348
Sau3AI	GATC	1 cut(s)	622
ScrFI	CCNGG	3 cut(s)	23, 144, 516
SduI	GDGCHC	3 cut(s)	230, 278, 489
SetI	ASST	8 cut(s)	21, 104, 174, 408, 468, 543, 622, 643
SfaNI	GCATC	1 cut(s)	342
Sfr303I	CCGCGG	2 cut(s)	49, 97
SfuI	TTCGAA	1 cut(s)	449
SgrAI	CRCCGGYG	1 cut(s)	329
SgrBI	CCGCGG	2 cut(s)	49, 97
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	2 cut(s)	469, 590
SseBI	AGGCCT	1 cut(s)	380
StuI	AGGCCT	1 cut(s)	380
StyD4I	CCNGG	3 cut(s)	21, 142, 514
StyI	CCWWGG	1 cut(s)	375
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	6 cut(s)	168, 177, 183, 270, 315, 449
TasI	AATT	2 cut(s)	469, 590
TauI	GCSGC	7 cut(s)	48, 51, 57, 202, 336, 347, 350
TfiI	GAWTC	4 cut(s)	26, 368, 446, 511
TseFI	GTSAC	1 cut(s)	203
TseI	GCWGC	2 cut(s)	51, 196
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	1 cut(s)	23
Tth111I	GACNNNGTC	1 cut(s)	209
XagI	CCTNNNNNAGG	1 cut(s)	362
XapI	RAATTY	1 cut(s)	469
ZraI	GACGTC	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.