Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009933

Physical Location & Seq

Genomic Coordinates Reverse (-)

3999894 .. 4003493

Gene Structure 3600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g06731.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGAAGAAGGCCGCCGCTGCCGCCAGGAGCGACGTCGAGCGCCGCGTCAAGGAGGCGGTGTCGGCGAAGAAGCGGGCCAGGGAGGCGCTGGAGGTGGTGGCGTTTCTGGTGAGTAAAGAGAAGGAGGAGAAAGGTGTGATGAATTCCGGTAGAGTGGAGCAGCAAAAGGCGAAATCAGAGACGACGAATCCAGCTGCAATGCAGGTTCTAGCCAGTCTGGCCACTTCTATGGCGACTGAGGGAACCAATGGGGTGCGACCGAATCAGTTGCAGAGAAATGATATGGAGGAAGGAGGTGATCGAGTCAAGGAAGGAGCTTCATTAGTAACTGGTTACAGGGGAAAATCCGGTGACCGAAATCCGGCGGTCGGGGAAATTCAGGTGACCGGAATCCGGCGGTCGGTGACCGGAGTCCGGTGTCCAGCAGCCGGTGACCGGAGTCCGAGGTTCCGGCCAAGTCTTTTCATGTTGAAGAGAAGCCTGAGTAATGGTAATCATGAAGACCTTCATTTCGTAGTTGAAGACCTCGTTTTTCCACCTATGAAGGGTCTAAAGGGTAGGGGCCTATTTATTGAGCTCCCTAGATGTGATGTCCCTAAATCCGACATCAGATACCATGGCTTCTGGCTCAAGCAGATTGGAGCAAGCTACCACTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

220

Amino Acids

24.04

Weight (kDa)

9.92

Isoelectric Point (pI)

38.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17460
fragaria_vesca	FvH4_2g22261 FvH4_3g29111 FvH4_6g06731 FvH4_7g12701
malus_domestica	MD13G1139400.v1.1 MD16G1136300.v1.1
prunus_persica	Prupe.1G105300_v2.0.a1 Prupe.1G105300_v2.0.a1
pyrus_communis	pycom16g11990
rosa_chinensis	RchiOBHm_Chr4g0427521
rosa_laevigata	RLG00000007231
rosa_multiflora	Rmu_sc0001006.1_g000001 Rmu_sc0009627.1_g000002
rosa_roxburghii	Rroxscaffold_5G00369160
rosa_rugosa	Rorug04G0218300
rosa_samantha	Rh4AG274800 Rh4BG280600 Rh4CG295900 Rh4DG278000
rosa_wichuraiana	Rw4G023820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	36
Acc36I	ACCTGC	1 cut(s)	193
AccII	CGCG	1 cut(s)	45
AciI	CCGC	8 cut(s)	12, 15, 21, 43, 56, 73, 365, 397
AcoI	YGGCCR	2 cut(s)	219, 452
AcsI	RAATTY	2 cut(s)	142, 375
AcyI	GRCGYC	1 cut(s)	33
AfiI	CCNNNNNNNGG	9 cut(s)	49, 361, 368, 393, 400, 414, 428, 435, 545
AgsI	TTSAA	2 cut(s)	472, 521
AjnI	CCWGG	2 cut(s)	23, 77
AluBI	AGCT	4 cut(s)	194, 317, 577, 648
AluI	AGCT	4 cut(s)	194, 317, 577, 648
Alw21I	GWGCWC	1 cut(s)	579
Alw26I	GTCTC	1 cut(s)	173
AoxI	GGCC	5 cut(s)	9, 75, 219, 452, 562
ApeKI	GCWGC	4 cut(s)	17, 160, 194, 425
ApoI	RAATTY	2 cut(s)	142, 375
ArsI	GACNNNNNNTTYG	2 cut(s)	494, 526
Asp700I	GAANNNNTTC	1 cut(s)	504
AspLEI	GCGC	2 cut(s)	42, 88
AspS9I	GGNCC	2 cut(s)	75, 562
AsuHPI	GGTGA	6 cut(s)	121, 308, 362, 394, 415, 443
BalI	TGGCCA	1 cut(s)	221
BanII	GRGCYC	1 cut(s)	579
BbsI	GAAGAC	2 cut(s)	507, 528
Bbv12I	GWGCWC	1 cut(s)	579
BbvI	GCAGC	4 cut(s)	4, 172, 181, 437
BcgI	CGANNNNNNTGC	2 cut(s)	250, 284
BciT130I	CCWGG	2 cut(s)	25, 79
BcoDI	GTCTC	1 cut(s)	173
BfaI	CTAG	2 cut(s)	209, 582
BfoI	RGCGCY	2 cut(s)	43, 89
BfuAI	ACCTGC	1 cut(s)	193
BglI	GCCNNNNNGGC	2 cut(s)	83, 218
BisI	GCNGC	8 cut(s)	12, 15, 18, 21, 43, 161, 195, 426
BlsI	GCNGC	8 cut(s)	13, 16, 19, 22, 44, 162, 196, 427
Bme1390I	CCNGG	2 cut(s)	25, 79
BmgT120I	GGNCC	2 cut(s)	75, 562
BmiI	GGNNCC	3 cut(s)	244, 449, 563
BmrFI	CCNGG	2 cut(s)	25, 79
BoxI	GACNNNNGTC	2 cut(s)	410, 438
BpiI	GAAGAC	2 cut(s)	507, 528
BpmI	CTGGAG	1 cut(s)	110
BpuEI	CTTGAG	1 cut(s)	614
BsaHI	GRCGYC	1 cut(s)	33
BsaJI	CCNNGG	3 cut(s)	78, 443, 616
BsaWI	WCCGGW	6 cut(s)	146, 347, 386, 407, 414, 435
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	9 cut(s)	49, 361, 368, 393, 400, 414, 428, 435, 545
Bse118I	RCCGGY	1 cut(s)	428
Bse1I	ACTGG	2 cut(s)	213, 334
Bse3DI	GCAATG	1 cut(s)	204
BseBI	CCWGG	2 cut(s)	25, 79
BseDI	CCNNGG	3 cut(s)	78, 443, 616
BseLI	CCNNNNNNNGG	9 cut(s)	49, 361, 368, 393, 400, 414, 428, 435, 545
BseMI	GCAATG	1 cut(s)	204
BseMII	CTCAG	2 cut(s)	228, 473
BseNI	ACTGG	2 cut(s)	213, 334
BseRI	GAGGAG	1 cut(s)	140
BseXI	GCAGC	4 cut(s)	4, 172, 181, 437
Bsh1236I	CGCG	1 cut(s)	45
Bsh1285I	CGRYCG	3 cut(s)	260, 369, 401
BshFI	GGCC	5 cut(s)	11, 77, 221, 454, 564
BsiEI	CGRYCG	3 cut(s)	260, 369, 401
BsiHKAI	GWGCWC	1 cut(s)	579
BslFI	GGGAC	1 cut(s)	578
BslI	CCNNNNNNNGG	9 cut(s)	49, 361, 368, 393, 400, 414, 428, 435, 545
BsmAI	GTCTC	1 cut(s)	173
BsmBI	CGTCTC	1 cut(s)	173
BsmFI	GGGAC	1 cut(s)	578
BsnI	GGCC	5 cut(s)	11, 77, 221, 454, 564
Bsp1286I	GDGCHC	1 cut(s)	579
Bsp143I	GATC	1 cut(s)	298
Bsp19I	CCATGG	1 cut(s)	616
BspACI	CCGC	8 cut(s)	12, 15, 21, 43, 56, 73, 365, 397
BspANI	GGCC	5 cut(s)	11, 77, 221, 454, 564
BspCNI	CTCAG	2 cut(s)	229, 474
BspFNI	CGCG	1 cut(s)	45
BspHI	TCATGA	1 cut(s)	496
BspLI	GGNNCC	3 cut(s)	244, 449, 563
BspMI	ACCTGC	1 cut(s)	193
BsrDI	GCAATG	1 cut(s)	204
BsrFI	RCCGGY	1 cut(s)	428
BsrI	ACTGG	2 cut(s)	213, 334
BssAI	RCCGGY	1 cut(s)	428
BssECI	CCNNGG	3 cut(s)	78, 443, 616
BssMI	GATC	1 cut(s)	298
BssNI	GRCGYC	1 cut(s)	33
BssT1I	CCWWGG	1 cut(s)	616
Bst2UI	CCWGG	2 cut(s)	25, 79
Bst6I	CTCTTC	1 cut(s)	467
BstACI	GRCGYC	1 cut(s)	33
BstC8I	GCNNGC	2 cut(s)	75, 646
BstDEI	CTNAG	2 cut(s)	237, 482
BstDSI	CCRYGG	1 cut(s)	616
BstEII	GGTNACC	4 cut(s)	350, 382, 403, 431
BstFNI	CGCG	1 cut(s)	45
BstH2I	RGCGCY	2 cut(s)	43, 89
BstHHI	GCGC	2 cut(s)	42, 88
BstKTI	GATC	1 cut(s)	301
BstMAI	GTCTC	1 cut(s)	173
BstMBI	GATC	1 cut(s)	298
BstMCI	CGRYCG	3 cut(s)	260, 369, 401
BstMWI	GCNNNNNNNGC	5 cut(s)	17, 20, 62, 83, 218
BstNI	CCWGG	2 cut(s)	25, 79
BstPAI	GACNNNNGTC	2 cut(s)	410, 438
BstPI	GGTNACC	4 cut(s)	350, 382, 403, 431
BstSCI	CCNGG	2 cut(s)	23, 77
BstUI	CGCG	1 cut(s)	45
BstV1I	GCAGC	4 cut(s)	4, 172, 181, 437
BstV2I	GAAGAC	2 cut(s)	507, 528
BstXI	CCANNNNNNTGG	1 cut(s)	229
BsuRI	GGCC	5 cut(s)	11, 77, 221, 454, 564
BtgI	CCRYGG	1 cut(s)	616
BveI	ACCTGC	1 cut(s)	193
Cac8I	GCNNGC	2 cut(s)	75, 646
CciI	TCATGA	1 cut(s)	496
CfoI	GCGC	2 cut(s)	42, 88
Cfr10I	RCCGGY	1 cut(s)	428
Cfr13I	GGNCC	2 cut(s)	75, 562
CseI	GACGC	1 cut(s)	34
CviAII	CATG	3 cut(s)	466, 497, 617
DdeI	CTNAG	2 cut(s)	237, 482
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
EaeI	YGGCCR	2 cut(s)	219, 452
Eam1104I	CTCTTC	1 cut(s)	467
EarI	CTCTTC	1 cut(s)	467
Ecl136II	GAGCTC	1 cut(s)	577
Eco130I	CCWWGG	1 cut(s)	616
Eco24I	GRGCYC	1 cut(s)	579
Eco53kI	GAGCTC	1 cut(s)	577
Eco91I	GGTNACC	4 cut(s)	350, 382, 403, 431
EcoICRI	GAGCTC	1 cut(s)	577
EcoO109I	RGGNCCY	1 cut(s)	562
EcoO65I	GGTNACC	4 cut(s)	350, 382, 403, 431
EcoRI	GAATTC	1 cut(s)	142
EcoRII	CCWGG	2 cut(s)	23, 77
EcoT14I	CCWWGG	1 cut(s)	616
EcoT38I	GRGCYC	1 cut(s)	579
ErhI	CCWWGG	1 cut(s)	616
Esp3I	CGTCTC	1 cut(s)	173
FaeI	CATG	3 cut(s)	469, 500, 620
FaiI	YATR	6 cut(s)	230, 284, 467, 498, 542, 618
FaqI	GGGAC	1 cut(s)	578
FatI	CATG	3 cut(s)	465, 496, 616
FauI	CCCGC	1 cut(s)	66
Fnu4HI	GCNGC	8 cut(s)	12, 15, 18, 21, 43, 161, 195, 426
FriOI	GRGCYC	1 cut(s)	579
Fsp4HI	GCNGC	8 cut(s)	12, 15, 18, 21, 43, 161, 195, 426
FspBI	CTAG	2 cut(s)	209, 582
GlaI	GCGC	2 cut(s)	41, 87
GluI	GCNGC	8 cut(s)	12, 15, 18, 21, 43, 161, 195, 426
GsuI	CTGGAG	1 cut(s)	110
HaeII	RGCGCY	2 cut(s)	43, 89
HaeIII	GGCC	5 cut(s)	11, 77, 221, 454, 564
HgaI	GACGC	1 cut(s)	34
HhaI	GCGC	2 cut(s)	42, 88
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	3 cut(s)	469, 500, 620
Hin6I	GCGC	2 cut(s)	40, 86
HinP1I	GCGC	2 cut(s)	40, 86
HinfI	GANTC	6 cut(s)	187, 262, 303, 390, 411, 439
HphI	GGTGA	6 cut(s)	121, 308, 362, 394, 415, 443
Hpy188I	TCNGA	4 cut(s)	178, 444, 604, 611
Hpy188III	TCNNGA	2 cut(s)	497, 657
Hpy99I	CGWCG	3 cut(s)	35, 38, 187
HpyAV	CCTTC	5 cut(s)	115, 284, 305, 515, 538
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	3 cut(s)	197, 202, 271
HpyF10VI	GCNNNNNNNGC	5 cut(s)	17, 20, 62, 83, 218
HpyF3I	CTNAG	2 cut(s)	237, 482
HpySE526I	ACGT	1 cut(s)	33
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	3 cut(s)	469, 500, 620
HspAI	GCGC	2 cut(s)	40, 86
Kzo9I	GATC	1 cut(s)	298
LmnI	GCTCC	5 cut(s)	27, 157, 314, 582, 641
Lsp1109I	GCAGC	4 cut(s)	4, 172, 181, 437
MaeI	CTAG	2 cut(s)	209, 582
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	6 cut(s)	325, 332, 350, 382, 403, 431
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MboII	GAAGA	5 cut(s)	16, 79, 484, 512, 533
MhlI	GDGCHC	1 cut(s)	579
MlsI	TGGCCA	1 cut(s)	221
MluCI	AATT	2 cut(s)	142, 375
MluNI	TGGCCA	1 cut(s)	221
MlyI	GAGTC	3 cut(s)	312, 420, 448
MmeI	TCCRAC	1 cut(s)	627
MnlI	CCTC	9 cut(s)	46, 76, 85, 118, 232, 280, 287, 438, 536
Mox20I	TGGCCA	1 cut(s)	221
MroXI	GAANNNNTTC	1 cut(s)	504
MscI	TGGCCA	1 cut(s)	221
MslI	CAYNNNNRTG	1 cut(s)	227
Msp20I	TGGCCA	1 cut(s)	221
MspA1I	CMGCKG	2 cut(s)	17, 194
MspR9I	CCNGG	2 cut(s)	25, 79
MvaI	CCWGG	2 cut(s)	25, 79
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	5 cut(s)	17, 20, 62, 83, 218
NcoI	CCATGG	1 cut(s)	616
NdeII	GATC	1 cut(s)	298
NlaIII	CATG	3 cut(s)	469, 500, 620
NlaIV	GGNNCC	3 cut(s)	244, 449, 563
NmuCI	GTSAC	4 cut(s)	350, 382, 403, 431
PagI	TCATGA	1 cut(s)	496
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PdmI	GAANNNNTTC	1 cut(s)	504
PfeI	GAWTC	3 cut(s)	187, 262, 390
PkrI	GCNGC	8 cut(s)	13, 16, 19, 22, 44, 162, 196, 427
PleI	GAGTC	3 cut(s)	311, 419, 447
PpsI	GAGTC	3 cut(s)	311, 419, 447
PshAI	GACNNNNGTC	2 cut(s)	410, 438
Psp124BI	GAGCTC	1 cut(s)	579
Psp6I	CCWGG	2 cut(s)	23, 77
PspEI	GGTNACC	4 cut(s)	350, 382, 403, 431
PspGI	CCWGG	2 cut(s)	23, 77
PspN4I	GGNNCC	3 cut(s)	244, 449, 563
PspPI	GGNCC	2 cut(s)	75, 562
PvuII	CAGCTG	1 cut(s)	194
RseI	CAYNNNNRTG	1 cut(s)	227
SacI	GAGCTC	1 cut(s)	579
SatI	GCNGC	8 cut(s)	12, 15, 18, 21, 43, 161, 195, 426
Sau3AI	GATC	1 cut(s)	298
Sau96I	GGNCC	2 cut(s)	75, 562
SchI	GAGTC	3 cut(s)	312, 420, 448
ScrFI	CCNGG	2 cut(s)	25, 79
SduI	GDGCHC	1 cut(s)	579
SmiMI	CAYNNNNRTG	1 cut(s)	227
SmlI	CTYRAG	1 cut(s)	629
SmoI	CTYRAG	1 cut(s)	629
Sse9I	AATT	2 cut(s)	142, 375
SsiI	CCGC	8 cut(s)	12, 15, 21, 43, 56, 73, 365, 397
SspMI	CTAG	2 cut(s)	209, 582
SstI	GAGCTC	1 cut(s)	579
StyD4I	CCNGG	2 cut(s)	23, 77
StyI	CCWWGG	1 cut(s)	616
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	2 cut(s)	36, 301
TaqII	GACCGA	2 cut(s)	274, 369
TasI	AATT	2 cut(s)	142, 375
TauI	GCSGC	4 cut(s)	14, 17, 23, 45
TfiI	GAWTC	3 cut(s)	187, 262, 390
TseFI	GTSAC	4 cut(s)	350, 382, 403, 431
TseI	GCWGC	4 cut(s)	17, 160, 194, 425
Tsp45I	GTSAC	4 cut(s)	350, 382, 403, 431
TspDTI	ATGAA	7 cut(s)	17, 155, 309, 454, 497, 513, 557
XapI	RAATTY	2 cut(s)	142, 375
XcmI	CCANNNNNNNNNTGG	1 cut(s)	85
XmnI	GAANNNNTTC	1 cut(s)	504
XspI	CTAG	2 cut(s)	209, 582
ZraI	GACGTC	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.