Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0009933

Physical Location & Seq

Genomic Coordinates Reverse (-)

45471521 .. 45472267

Gene Structure 747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG280600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGCGATGAAGCGAGACCTCCCGGAATCCGATAAGCGCCTCTGCCGCGGCTGCGGCTCCTCCGAGCGGTGGCTCCTCCACTACATCCGCCTCCGCGGAACCTTCCAGCGTCTCTGCACCAACTGCGTCCTCAAGAACCACCCCGGCCTCTTCTGCCCCGTCTGCCTCGACGTCTTCGACTTCGACCACCCCCCGCAGCCGCGTGACCGCGTCATGTGCGTCAAGTGCCCCTCCATCGCCCACAACGACTGCGCCAACTGCGCCTCCTTCGAGTGCCCTCCCTGCTCCCAATCCGCCTTCTCCTTCTTCAACTTCGACCGCAACAACGCCGGCGGCTCCGACGCGGCGGCGATGCTCCTCGGGAAGGAATCCGCCAAGGCCTTCGTGGCCGCGGCGAAAATCGCGGCCAATTCGATGAAGAAGGCCGCCGCCGCCGCCAGGAGCGACGCCGAGCGCCGCGTCAAGGAGGCGGTCTCGGCGAAGAAGAGGGCGAGGGAGGCGCTGGAGGTGCTGGCGTTTCTGGTGAATAAAGAAAAGGAGGAGAAGGATTCGAAAGGCGGAGGAGAGCTGAATTCGGGTAGAGTGGAGCACCAGAAGCAGAAATCGGAGACGAATCCCGGTGCAATGCAAGTTCTGGCCAACCTTGCTACTTCTATGGCGACTGAGGGAACCAATGGGGTGCGAGATAATCAATTGCAGACCAATGATATGGAGGAAGGAGGTGATCAAGTCAAGGAAGGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

248

Amino Acids

27.02

Weight (kDa)

8.43

Isoelectric Point (pI)

43.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17460
fragaria_vesca	FvH4_2g22261 FvH4_3g29111 FvH4_6g06731 FvH4_7g12701
malus_domestica	MD13G1139400.v1.1 MD16G1136300.v1.1
prunus_persica	Prupe.1G105300_v2.0.a1 Prupe.1G105300_v2.0.a1
pyrus_communis	pycom16g11990
rosa_chinensis	RchiOBHm_Chr4g0427521
rosa_laevigata	RLG00000007231
rosa_multiflora	Rmu_sc0001006.1_g000001 Rmu_sc0009627.1_g000002
rosa_roxburghii	Rroxscaffold_5G00369160
rosa_rugosa	Rorug04G0218300
rosa_samantha	Rh4AG274800 Rh4BG280600 Rh4CG295900 Rh4DG278000
rosa_wichuraiana	Rw4G023820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	174
AccBSI	CCGCTC	1 cut(s)	67
AccII	CGCG	8 cut(s)	48, 96, 202, 210, 344, 392, 404, 459
AcoI	YGGCCR	3 cut(s)	387, 405, 636
AcsI	RAATTY	1 cut(s)	571
AcyI	GRCGYC	2 cut(s)	171, 447
AfiI	CCNNNNNNNGG	5 cut(s)	66, 69, 364, 438, 463
AgsI	TTSAA	1 cut(s)	310
AjnI	CCWGG	1 cut(s)	437
AluBI	AGCT	2 cut(s)	568, 743
AluI	AGCT	2 cut(s)	568, 743
Alw21I	GWGCWC	1 cut(s)	591
Alw26I	GTCTC	4 cut(s)	9, 116, 478, 602
Ama87I	CYCGRG	1 cut(s)	359
AoxI	GGCC	6 cut(s)	145, 378, 387, 405, 423, 636
ApeKI	GCWGC	2 cut(s)	51, 196
ApoI	RAATTY	1 cut(s)	571
AspLEI	GCGC	5 cut(s)	39, 254, 263, 456, 502
AsuC2I	CCSGG	3 cut(s)	23, 144, 618
AsuHPI	GGTGA	2 cut(s)	535, 734
AsuII	TTCGAA	1 cut(s)	551
AvaI	CYCGRG	1 cut(s)	359
BaeGI	GKGCMC	2 cut(s)	230, 278
BalI	TGGCCA	1 cut(s)	638
BbsI	GAAGAC	1 cut(s)	166
Bbv12I	GWGCWC	1 cut(s)	591
BbvI	GCAGC	2 cut(s)	38, 208
BccI	CCATC	1 cut(s)	242
BciT130I	CCWGG	1 cut(s)	439
BclI	TGATCA	1 cut(s)	724
BcnI	CCSGG	3 cut(s)	23, 144, 618
BcoDI	GTCTC	4 cut(s)	9, 116, 478, 602
BfoI	RGCGCY	3 cut(s)	40, 457, 503
BglI	GCCNNNNNGGC	1 cut(s)	386
Bme1390I	CCNGG	4 cut(s)	23, 144, 439, 618
BmeT110I	CYCGRG	1 cut(s)	359
BmiI	GGNNCC	5 cut(s)	58, 74, 100, 337, 670
BmrFI	CCNGG	4 cut(s)	23, 144, 439, 618
BmsI	GCATC	1 cut(s)	342
BpiI	GAAGAC	1 cut(s)	166
BplI	GAGNNNNNCTC	2 cut(s)	458, 490
BpmI	CTGGAG	1 cut(s)	524
Bpu14I	TTCGAA	1 cut(s)	551
BpuEI	CTTGAG	1 cut(s)	116
BpuMI	CCSGG	3 cut(s)	23, 144, 618
BsaHI	GRCGYC	2 cut(s)	171, 447
BsaI	GGTCTC	2 cut(s)	9, 478
BsaJI	CCNNGG	6 cut(s)	46, 94, 142, 358, 375, 390
BsaXI	ACNNNNNCTCC	2 cut(s)	248, 278
Bsc4I	CCNNNNNNNGG	5 cut(s)	66, 69, 364, 438, 463
Bse118I	RCCGGY	1 cut(s)	329
Bse3DI	GCAATG	1 cut(s)	630
BseBI	CCWGG	1 cut(s)	439
BseDI	CCNNGG	6 cut(s)	46, 94, 142, 358, 375, 390
BseGI	GGATG	1 cut(s)	84
BseLI	CCNNNNNNNGG	5 cut(s)	66, 69, 364, 438, 463
BseMI	GCAATG	1 cut(s)	630
BseMII	CTCAG	1 cut(s)	654
BseRI	GAGGAG	5 cut(s)	49, 65, 347, 554, 576
BseSI	GKGCMC	2 cut(s)	230, 278
BseXI	GCAGC	2 cut(s)	38, 208
BsgI	GTGCAG	1 cut(s)	100
Bsh1236I	CGCG	8 cut(s)	48, 96, 202, 210, 344, 392, 404, 459
Bsh1285I	CGRYCG	1 cut(s)	319
BshFI	GGCC	6 cut(s)	147, 380, 389, 407, 425, 638
BsiEI	CGRYCG	1 cut(s)	319
BsiHKAI	GWGCWC	1 cut(s)	591
BsiHKCI	CYCGRG	1 cut(s)	359
BsiSI	CCGG	4 cut(s)	23, 144, 330, 618
BslI	CCNNNNNNNGG	5 cut(s)	66, 69, 364, 438, 463
BsmAI	GTCTC	4 cut(s)	9, 116, 478, 602
BsmBI	CGTCTC	2 cut(s)	116, 602
BsnI	GGCC	6 cut(s)	147, 380, 389, 407, 425, 638
Bso31I	GGTCTC	2 cut(s)	9, 478
BsoBI	CYCGRG	1 cut(s)	359
Bsp119I	TTCGAA	1 cut(s)	551
Bsp1286I	GDGCHC	3 cut(s)	230, 278, 591
Bsp143I	GATC	1 cut(s)	724
BspANI	GGCC	6 cut(s)	147, 380, 389, 407, 425, 638
BspCNI	CTCAG	1 cut(s)	655
BspFNI	CGCG	8 cut(s)	48, 96, 202, 210, 344, 392, 404, 459
BspLI	GGNNCC	5 cut(s)	58, 74, 100, 337, 670
BspT104I	TTCGAA	1 cut(s)	551
BspTNI	GGTCTC	2 cut(s)	9, 478
BsrBI	CCGCTC	1 cut(s)	67
BsrDI	GCAATG	1 cut(s)	630
BsrFI	RCCGGY	1 cut(s)	329
BssAI	RCCGGY	1 cut(s)	329
BssECI	CCNNGG	6 cut(s)	46, 94, 142, 358, 375, 390
BssMI	GATC	1 cut(s)	724
BssNI	GRCGYC	2 cut(s)	171, 447
BssT1I	CCWWGG	1 cut(s)	375
Bst2UI	CCWGG	1 cut(s)	439
Bst6I	CTCTTC	2 cut(s)	155, 479
BstACI	GRCGYC	2 cut(s)	171, 447
BstAPI	GCANNNNNTGC	1 cut(s)	123
BstBI	TTCGAA	1 cut(s)	551
BstC8I	GCNNGC	2 cut(s)	331, 513
BstDEI	CTNAG	1 cut(s)	663
BstDSI	CCRYGG	3 cut(s)	46, 94, 390
BstENI	CCTNNNNNAGG	1 cut(s)	362
BstF5I	GGATG	1 cut(s)	84
BstFNI	CGCG	8 cut(s)	48, 96, 202, 210, 344, 392, 404, 459
BstH2I	RGCGCY	3 cut(s)	40, 457, 503
BstHHI	GCGC	5 cut(s)	39, 254, 263, 456, 502
BstKTI	GATC	1 cut(s)	727
BstMAI	GTCTC	4 cut(s)	9, 116, 478, 602
BstMBI	GATC	1 cut(s)	724
BstMCI	CGRYCG	1 cut(s)	319
BstNI	CCWGG	1 cut(s)	439
BstSCI	CCNGG	4 cut(s)	21, 142, 437, 616
BstSLI	GKGCMC	2 cut(s)	230, 278
BstUI	CGCG	8 cut(s)	48, 96, 202, 210, 344, 392, 404, 459
BstV1I	GCAGC	2 cut(s)	38, 208
BstV2I	GAAGAC	1 cut(s)	166
BstXI	CCANNNNNNTGG	1 cut(s)	709
BsuRI	GGCC	6 cut(s)	147, 380, 389, 407, 425, 638
BtgI	CCRYGG	3 cut(s)	46, 94, 390
BtgZI	GCGATG	3 cut(s)	20, 220, 365
BtsCI	GGATG	1 cut(s)	84
Cac8I	GCNNGC	2 cut(s)	331, 513
CfoI	GCGC	5 cut(s)	39, 254, 263, 456, 502
Cfr10I	RCCGGY	1 cut(s)	329
Cfr42I	CCGCGG	3 cut(s)	49, 97, 393
CseI	GACGC	7 cut(s)	98, 115, 199, 208, 350, 448, 455
CviAII	CATG	1 cut(s)	214
DdeI	CTNAG	1 cut(s)	663
DpnI	GATC	1 cut(s)	726
DpnII	GATC	1 cut(s)	724
EaeI	YGGCCR	3 cut(s)	387, 405, 636
Eam1104I	CTCTTC	2 cut(s)	155, 479
EarI	CTCTTC	2 cut(s)	155, 479
EciI	GGCGGA	4 cut(s)	77, 283, 361, 573
Eco130I	CCWWGG	1 cut(s)	375
Eco147I	AGGCCT	1 cut(s)	380
Eco31I	GGTCTC	2 cut(s)	9, 478
Eco88I	CYCGRG	1 cut(s)	359
EcoNI	CCTNNNNNAGG	1 cut(s)	362
EcoRI	GAATTC	1 cut(s)	571
EcoRII	CCWGG	1 cut(s)	437
EcoT14I	CCWWGG	1 cut(s)	375
ErhI	CCWWGG	1 cut(s)	375
Esp3I	CGTCTC	2 cut(s)	116, 602
FaeI	CATG	1 cut(s)	217
FaiI	YATR	3 cut(s)	215, 656, 710
FatI	CATG	1 cut(s)	213
FauI	CCCGC	1 cut(s)	201
FbaI	TGATCA	1 cut(s)	724
FokI	GGATG	1 cut(s)	71
GlaI	GCGC	5 cut(s)	38, 253, 262, 455, 501
GsuI	CTGGAG	1 cut(s)	524
HaeII	RGCGCY	3 cut(s)	40, 457, 503
HaeIII	GGCC	6 cut(s)	147, 380, 389, 407, 425, 638
HapII	CCGG	4 cut(s)	23, 144, 330, 618
HgaI	GACGC	7 cut(s)	98, 115, 199, 208, 350, 448, 455
HhaI	GCGC	5 cut(s)	39, 254, 263, 456, 502
Hin1I	GRCGYC	2 cut(s)	171, 447
Hin1II	CATG	1 cut(s)	217
Hin6I	GCGC	5 cut(s)	37, 252, 261, 454, 500
HinP1I	GCGC	5 cut(s)	37, 252, 261, 454, 500
HinfI	GANTC	4 cut(s)	26, 368, 548, 613
HpaII	CCGG	4 cut(s)	23, 144, 330, 618
HphI	GGTGA	2 cut(s)	535, 734
Hpy188I	TCNGA	4 cut(s)	31, 64, 340, 607
Hpy188III	TCNNGA	2 cut(s)	133, 361
Hpy99I	CGWCG	3 cut(s)	173, 344, 449
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	4 cut(s)	117, 623, 628, 697
HpyF3I	CTNAG	1 cut(s)	663
HpySE526I	ACGT	1 cut(s)	171
Hsp92I	GRCGYC	2 cut(s)	171, 447
Hsp92II	CATG	1 cut(s)	217
HspAI	GCGC	5 cut(s)	37, 252, 261, 454, 500
KroI	GCCGGC	1 cut(s)	329
KroNI	GCCGGC	1 cut(s)	331
Ksp22I	TGATCA	1 cut(s)	724
KspI	CCGCGG	3 cut(s)	49, 97, 393
Kzo9I	GATC	1 cut(s)	724
LmnI	GCTCC	8 cut(s)	62, 78, 290, 341, 360, 441, 586, 740
Lsp1109I	GCAGC	2 cut(s)	38, 208
LweI	GCATC	1 cut(s)	342
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	1 cut(s)	726
MbiI	CCGCTC	1 cut(s)	67
MboI	GATC	1 cut(s)	724
MboII	GAAGA	6 cut(s)	142, 166, 298, 430, 493, 496
MfeI	CAATTG	1 cut(s)	692
MhlI	GDGCHC	3 cut(s)	230, 278, 591
MlsI	TGGCCA	1 cut(s)	638
MluCI	AATT	3 cut(s)	409, 571, 692
MluNI	TGGCCA	1 cut(s)	638
MmeI	TCCRAC	1 cut(s)	363
Mox20I	TGGCCA	1 cut(s)	638
MreI	CGCCGGCG	1 cut(s)	329
MroNI	GCCGGC	1 cut(s)	329
MscI	TGGCCA	1 cut(s)	638
Msp20I	TGGCCA	1 cut(s)	638
MspA1I	CMGCKG	3 cut(s)	48, 96, 392
MspI	CCGG	4 cut(s)	23, 144, 330, 618
MspR9I	CCNGG	4 cut(s)	23, 144, 439, 618
MunI	CAATTG	1 cut(s)	692
MvaI	CCWGG	1 cut(s)	439
MvnI	CGCG	8 cut(s)	48, 96, 202, 210, 344, 392, 404, 459
NaeI	GCCGGC	1 cut(s)	331
NciI	CCSGG	3 cut(s)	23, 144, 618
NdeII	GATC	1 cut(s)	724
NgoMIV	GCCGGC	1 cut(s)	329
NlaIII	CATG	1 cut(s)	217
NlaIV	GGNNCC	5 cut(s)	58, 74, 100, 337, 670
NmeAIII	GCCGAG	2 cut(s)	455, 475
NmuCI	GTSAC	1 cut(s)	203
NspV	TTCGAA	1 cut(s)	551
PceI	AGGCCT	1 cut(s)	380
PcsI	WCGNNNNNNNCGW	2 cut(s)	174, 243
PdiI	GCCGGC	1 cut(s)	331
PfeI	GAWTC	4 cut(s)	26, 368, 548, 613
PflFI	GACNNNGTC	1 cut(s)	209
PfoI	TCCNGGA	1 cut(s)	21
Psp6I	CCWGG	1 cut(s)	437
PspGI	CCWGG	1 cut(s)	437
PspN4I	GGNNCC	5 cut(s)	58, 74, 100, 337, 670
PsyI	GACNNNGTC	1 cut(s)	209
SacII	CCGCGG	3 cut(s)	49, 97, 393
Sau3AI	GATC	1 cut(s)	724
ScrFI	CCNGG	4 cut(s)	23, 144, 439, 618
SduI	GDGCHC	3 cut(s)	230, 278, 591
SetI	ASST	8 cut(s)	21, 104, 174, 510, 570, 645, 724, 745
SfaNI	GCATC	1 cut(s)	342
SfiI	GGCCNNNNNGGCC	1 cut(s)	386
Sfr303I	CCGCGG	3 cut(s)	49, 97, 393
SfuI	TTCGAA	1 cut(s)	551
SgrAI	CRCCGGYG	1 cut(s)	329
SgrBI	CCGCGG	3 cut(s)	49, 97, 393
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	3 cut(s)	409, 571, 692
SseBI	AGGCCT	1 cut(s)	380
StuI	AGGCCT	1 cut(s)	380
StyD4I	CCNGG	4 cut(s)	21, 142, 437, 616
StyI	CCWWGG	1 cut(s)	375
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	7 cut(s)	168, 177, 183, 270, 315, 413, 551
TasI	AATT	3 cut(s)	409, 571, 692
TfiI	GAWTC	4 cut(s)	26, 368, 548, 613
TseFI	GTSAC	1 cut(s)	203
TseI	GCWGC	2 cut(s)	51, 196
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	2 cut(s)	23, 431
Tth111I	GACNNNGTC	1 cut(s)	209
XagI	CCTNNNNNAGG	1 cut(s)	362
XapI	RAATTY	1 cut(s)	571
XcmI	CCANNNNNNNNNTGG	1 cut(s)	382
ZraI	GACGTC	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.