Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0009933

Physical Location & Seq

Genomic Coordinates Forward (+)

18288355 .. 18288657

Gene Structure 303 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g22261.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGAAGAAGGCCACCGCTGCCGCTAGGAGCTACGCTGAGCGCTGCGTCAAGGAGGCGGTGTCGGCAAAGAAGCGGGCCAGGGAGGCGTTGGAGGTGCTGGCGTTTCTGGTGAGTAAAGAGAAGGAGGAGAAAGGTGTGATGAATTCCGGTAGAGTGGAGCAGCAAAAGGCGAAATTAGAGACGACGAATCCGGCTGCAATGCAGGTTCTAGCCAGTCTGGCTACTTCCATGGTGACTGAGGGAACCAATGGGGTGCGACCGAATCAGTTGCAGAGAAATGATATGGAGGAAGGAGGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

101

Amino Acids

10.87

Weight (kDa)

9.16

Isoelectric Point (pI)

30.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17460
fragaria_vesca	FvH4_2g22261 FvH4_3g29111 FvH4_6g06731 FvH4_7g12701
malus_domestica	MD13G1139400.v1.1 MD16G1136300.v1.1
prunus_persica	Prupe.1G105300_v2.0.a1 Prupe.1G105300_v2.0.a1
pyrus_communis	pycom16g11990
rosa_chinensis	RchiOBHm_Chr4g0427521
rosa_laevigata	RLG00000007231
rosa_multiflora	Rmu_sc0001006.1_g000001 Rmu_sc0009627.1_g000002
rosa_roxburghii	Rroxscaffold_5G00369160
rosa_rugosa	Rorug04G0218300
rosa_samantha	Rh4AG274800 Rh4BG280600 Rh4CG295900 Rh4DG278000
rosa_wichuraiana	Rw4G023820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	193
AciI	CCGC	4 cut(s)	15, 21, 56, 73
AcsI	RAATTY	1 cut(s)	142
AfeI	AGCGCT	1 cut(s)	41
AjnI	CCWGG	1 cut(s)	77
AluBI	AGCT	1 cut(s)	30
AluI	AGCT	1 cut(s)	30
Alw26I	GTCTC	1 cut(s)	173
Aor51HI	AGCGCT	1 cut(s)	41
AoxI	GGCC	2 cut(s)	9, 75
ApeKI	GCWGC	4 cut(s)	17, 42, 160, 194
ApoI	RAATTY	1 cut(s)	142
AspLEI	GCGC	1 cut(s)	42
AspS9I	GGNCC	1 cut(s)	75
AsuHPI	GGTGA	2 cut(s)	121, 244
BbvI	GCAGC	4 cut(s)	4, 29, 172, 181
BcgI	CGANNNNNNTGC	2 cut(s)	250, 284
BciT130I	CCWGG	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	173
BfaI	CTAG	2 cut(s)	24, 209
BfoI	RGCGCY	1 cut(s)	43
BfuAI	ACCTGC	1 cut(s)	193
BglI	GCCNNNNNGGC	2 cut(s)	83, 218
BisI	GCNGC	5 cut(s)	18, 21, 43, 161, 195
BlpI	GCTNAGC	1 cut(s)	36
BlsI	GCNGC	5 cut(s)	19, 22, 44, 162, 196
Bme1390I	CCNGG	1 cut(s)	79
BmgT120I	GGNCC	1 cut(s)	75
BmiI	GGNNCC	1 cut(s)	244
BmrFI	CCNGG	1 cut(s)	79
Bpu1102I	GCTNAGC	1 cut(s)	36
BsaJI	CCNNGG	2 cut(s)	78, 228
BsaWI	WCCGGW	1 cut(s)	146
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bse1I	ACTGG	1 cut(s)	213
Bse3DI	GCAATG	1 cut(s)	204
BseBI	CCWGG	1 cut(s)	79
BseDI	CCNNGG	2 cut(s)	78, 228
BseMI	GCAATG	1 cut(s)	204
BseMII	CTCAG	2 cut(s)	27, 228
BseNI	ACTGG	1 cut(s)	213
BseRI	GAGGAG	1 cut(s)	140
BseXI	GCAGC	4 cut(s)	4, 29, 172, 181
Bsh1285I	CGRYCG	1 cut(s)	260
BshFI	GGCC	2 cut(s)	11, 77
BsiEI	CGRYCG	1 cut(s)	260
BsiSI	CCGG	2 cut(s)	147, 191
BsmAI	GTCTC	1 cut(s)	173
BsmBI	CGTCTC	1 cut(s)	173
BsnI	GGCC	2 cut(s)	11, 77
Bsp1720I	GCTNAGC	1 cut(s)	36
Bsp19I	CCATGG	1 cut(s)	228
BspACI	CCGC	4 cut(s)	15, 21, 56, 73
BspANI	GGCC	2 cut(s)	11, 77
BspCNI	CTCAG	2 cut(s)	28, 229
BspLI	GGNNCC	1 cut(s)	244
BspMI	ACCTGC	1 cut(s)	193
BsrDI	GCAATG	1 cut(s)	204
BsrI	ACTGG	1 cut(s)	213
BssECI	CCNNGG	2 cut(s)	78, 228
BssT1I	CCWWGG	1 cut(s)	228
Bst2UI	CCWGG	1 cut(s)	79
BstC8I	GCNNGC	2 cut(s)	75, 99
BstDEI	CTNAG	2 cut(s)	36, 237
BstDSI	CCRYGG	1 cut(s)	228
BstH2I	RGCGCY	1 cut(s)	43
BstHHI	GCGC	1 cut(s)	42
BstMAI	GTCTC	1 cut(s)	173
BstMCI	CGRYCG	1 cut(s)	260
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 62, 83, 218
BstNI	CCWGG	1 cut(s)	79
BstSCI	CCNGG	1 cut(s)	77
BstV1I	GCAGC	4 cut(s)	4, 29, 172, 181
BsuRI	GGCC	2 cut(s)	11, 77
BtgI	CCRYGG	1 cut(s)	228
BveI	ACCTGC	1 cut(s)	193
Cac8I	GCNNGC	2 cut(s)	75, 99
CfoI	GCGC	1 cut(s)	42
Cfr13I	GGNCC	1 cut(s)	75
CseI	GACGC	1 cut(s)	34
CviAII	CATG	1 cut(s)	229
CviJI	RGCY	6 cut(s)	11, 30, 77, 194, 212, 221
CviKI_1	RGCY	6 cut(s)	11, 30, 77, 194, 212, 221
DdeI	CTNAG	2 cut(s)	36, 237
Eco130I	CCWWGG	1 cut(s)	228
Eco47III	AGCGCT	1 cut(s)	41
EcoRI	GAATTC	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	77
EcoT14I	CCWWGG	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	228
Esp3I	CGTCTC	1 cut(s)	173
FaeI	CATG	1 cut(s)	232
FaiI	YATR	2 cut(s)	230, 284
FatI	CATG	1 cut(s)	228
FauI	CCCGC	1 cut(s)	66
Fnu4HI	GCNGC	5 cut(s)	18, 21, 43, 161, 195
Fsp4HI	GCNGC	5 cut(s)	18, 21, 43, 161, 195
FspBI	CTAG	2 cut(s)	24, 209
GlaI	GCGC	1 cut(s)	41
GluI	GCNGC	5 cut(s)	18, 21, 43, 161, 195
HaeII	RGCGCY	1 cut(s)	43
HaeIII	GGCC	2 cut(s)	11, 77
HapII	CCGG	2 cut(s)	147, 191
HgaI	GACGC	1 cut(s)	34
HhaI	GCGC	1 cut(s)	42
Hin1II	CATG	1 cut(s)	232
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HinfI	GANTC	2 cut(s)	187, 262
HpaII	CCGG	2 cut(s)	147, 191
HphI	GGTGA	2 cut(s)	121, 244
Hpy99I	CGWCG	1 cut(s)	187
HpyAV	CCTTC	2 cut(s)	115, 284
HpyCH4V	TGCA	3 cut(s)	197, 202, 271
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 62, 83, 218
HpyF3I	CTNAG	2 cut(s)	36, 237
Hsp92II	CATG	1 cut(s)	232
HspAI	GCGC	1 cut(s)	40
LmnI	GCTCC	2 cut(s)	27, 157
LpnPI	CCDG	9 cut(s)	64, 83, 91, 92, 160, 188, 203, 204, 226
Lsp1109I	GCAGC	4 cut(s)	4, 29, 172, 181
MaeI	CTAG	2 cut(s)	24, 209
MaeIII	GTNAC	1 cut(s)	232
MboII	GAAGA	1 cut(s)	16
MluCI	AATT	2 cut(s)	142, 173
MmeI	TCCRAC	1 cut(s)	69
MnlI	CCTC	7 cut(s)	46, 76, 85, 118, 232, 280, 287
MspA1I	CMGCKG	1 cut(s)	17
MspI	CCGG	2 cut(s)	147, 191
MspR9I	CCNGG	1 cut(s)	79
MvaI	CCWGG	1 cut(s)	79
MwoI	GCNNNNNNNGC	4 cut(s)	17, 62, 83, 218
NcoI	CCATGG	1 cut(s)	228
NlaIII	CATG	1 cut(s)	232
NlaIV	GGNNCC	1 cut(s)	244
NmuCI	GTSAC	1 cut(s)	232
PfeI	GAWTC	2 cut(s)	187, 262
PkrI	GCNGC	5 cut(s)	19, 22, 44, 162, 196
Psp6I	CCWGG	1 cut(s)	77
PspGI	CCWGG	1 cut(s)	77
PspN4I	GGNNCC	1 cut(s)	244
PspPI	GGNCC	1 cut(s)	75
SatI	GCNGC	5 cut(s)	18, 21, 43, 161, 195
Sau96I	GGNCC	1 cut(s)	75
ScrFI	CCNGG	1 cut(s)	79
SetI	ASST	5 cut(s)	32, 96, 136, 207, 298
Sse9I	AATT	2 cut(s)	142, 173
SsiI	CCGC	4 cut(s)	15, 21, 56, 73
SspMI	CTAG	2 cut(s)	24, 209
StyD4I	CCNGG	1 cut(s)	77
StyI	CCWWGG	1 cut(s)	228
TaqII	GACCGA	1 cut(s)	274
TasI	AATT	2 cut(s)	142, 173
TauI	GCSGC	1 cut(s)	23
TfiI	GAWTC	2 cut(s)	187, 262
TseFI	GTSAC	1 cut(s)	232
TseI	GCWGC	4 cut(s)	17, 42, 160, 194
Tsp45I	GTSAC	1 cut(s)	232
TspDTI	ATGAA	2 cut(s)	17, 155
XapI	RAATTY	1 cut(s)	142
XcmI	CCANNNNNNNNNTGG	1 cut(s)	85
XspI	CTAG	2 cut(s)	24, 209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.