Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0009933

Physical Location & Seq

Genomic Coordinates Forward (+)

11528682 .. 11529366

Gene Structure 685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g12701.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGAATAAGGCCGTCGCCGTCGCCGCCGCCGGGAGCGACGCCGAGCGCCACGTCAAGGAGGCGGTGTCGACGAAGAAGCGGGCCAGGGAGGCGCTGGAGGTGCTGGCGTTTCTGGTGAGTAAAGAGAAGGAGGAGAAAGGTGTGATGAATTCCGGTAGAGTGGAGCAGCAAAAGGCGAAATCAGAGACGCCGAATCCGGCTGCAATGCAGGAGGTGATCGACGCCGAGCGCCACGTCAAGGAGGCGGTGTCGACGAAGAAGCGGGCCAGGGAGGCGCTAGAGGTGCTGGCGTTTCTGGTGAGTAAAGAGAAGGATGAGAAAGGTGTGATGAATTCCGGTAGAGTGGAGCAGCAAAAGGCGAAATCAGAGACGCCGAATCCGGCTGCAATGCAGGTTCTGGCCAGTCTGGCTACTTCTATGGCGACTGAGGGAACCAATGGGGTGCGACCGAATCAGTTGCAGAGCAATGATACGGAGGAAGGAGGTGATCGAGTCAAGGAAGGAGCTTCATCAGGTTTGGCATGTGCATTGTGTAGGATGATGATGATGATGATGCTCAGTTTCAGTTATTGCCTAGTTGGTGAGTCTCTTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

199

Amino Acids

21.34

Weight (kDa)

7.68

Isoelectric Point (pI)

33.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17460
fragaria_vesca	FvH4_2g22261 FvH4_3g29111 FvH4_6g06731 FvH4_7g12701
malus_domestica	MD13G1139400.v1.1 MD16G1136300.v1.1
prunus_persica	Prupe.1G105300_v2.0.a1 Prupe.1G105300_v2.0.a1
pyrus_communis	pycom16g11990
rosa_chinensis	RchiOBHm_Chr4g0427521
rosa_laevigata	RLG00000007231
rosa_multiflora	Rmu_sc0001006.1_g000001 Rmu_sc0009627.1_g000002
rosa_roxburghii	Rroxscaffold_5G00369160
rosa_rugosa	Rorug04G0218300
rosa_samantha	Rh4AG274800 Rh4BG280600 Rh4CG295900 Rh4DG278000
rosa_wichuraiana	Rw4G023820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	382
AccI	GTMKAC	2 cut(s)	68, 251
AciI	CCGC	6 cut(s)	24, 27, 62, 79, 245, 262
AcoI	YGGCCR	1 cut(s)	399
AcsI	RAATTY	2 cut(s)	148, 331
AcyI	GRCGYC	4 cut(s)	39, 188, 222, 371
AfiI	CCNNNNNNNGG	3 cut(s)	30, 55, 238
AjiI	CACGTC	2 cut(s)	52, 235
AjnI	CCWGG	2 cut(s)	83, 266
AluBI	AGCT	1 cut(s)	506
AluI	AGCT	1 cut(s)	506
Alw26I	GTCTC	3 cut(s)	179, 362, 591
AlwNI	CAGNNNCTG	1 cut(s)	397
AoxI	GGCC	4 cut(s)	9, 81, 264, 399
ApeKI	GCWGC	4 cut(s)	166, 200, 349, 383
ApoI	RAATTY	2 cut(s)	148, 331
AspLEI	GCGC	4 cut(s)	48, 94, 231, 277
AspS9I	GGNCC	2 cut(s)	81, 264
AsuC2I	CCSGG	1 cut(s)	31
AsuHPI	GGTGA	5 cut(s)	127, 226, 310, 497, 593
BalI	TGGCCA	1 cut(s)	401
BbvI	GCAGC	4 cut(s)	178, 187, 361, 370
BceAI	ACGGC	1 cut(s)	2
BcgI	CGANNNNNNTGC	2 cut(s)	439, 473
BciT130I	CCWGG	2 cut(s)	85, 268
BcnI	CCSGG	1 cut(s)	31
BcoDI	GTCTC	3 cut(s)	179, 362, 591
BfaI	CTAG	2 cut(s)	278, 575
BfoI	RGCGCY	4 cut(s)	49, 95, 232, 278
BfuAI	ACCTGC	1 cut(s)	382
BglI	GCCNNNNNGGC	3 cut(s)	89, 272, 407
BisI	GCNGC	6 cut(s)	24, 27, 167, 201, 350, 384
BlsI	GCNGC	6 cut(s)	25, 28, 168, 202, 351, 385
Bme1390I	CCNGG	3 cut(s)	31, 85, 268
BmgBI	CACGTC	2 cut(s)	52, 235
BmgT120I	GGNCC	2 cut(s)	81, 264
BmiI	GGNNCC	1 cut(s)	433
BmrFI	CCNGG	3 cut(s)	31, 85, 268
BmsI	GCATC	1 cut(s)	543
BpmI	CTGGAG	1 cut(s)	116
BpuMI	CCSGG	1 cut(s)	31
BsaHI	GRCGYC	4 cut(s)	39, 188, 222, 371
BsaJI	CCNNGG	2 cut(s)	84, 267
BsaWI	WCCGGW	2 cut(s)	152, 335
BsaXI	ACNNNNNCTCC	4 cut(s)	50, 80, 233, 263
Bsc4I	CCNNNNNNNGG	3 cut(s)	30, 55, 238
Bse1I	ACTGG	1 cut(s)	402
Bse3DI	GCAATG	3 cut(s)	210, 393, 472
BseBI	CCWGG	2 cut(s)	85, 268
BseDI	CCNNGG	2 cut(s)	84, 267
BseGI	GGATG	2 cut(s)	319, 543
BseLI	CCNNNNNNNGG	3 cut(s)	30, 55, 238
BseMI	GCAATG	3 cut(s)	210, 393, 472
BseMII	CTCAG	2 cut(s)	417, 571
BseNI	ACTGG	1 cut(s)	402
BseRI	GAGGAG	1 cut(s)	146
BseXI	GCAGC	4 cut(s)	178, 187, 361, 370
Bsh1285I	CGRYCG	1 cut(s)	449
BshFI	GGCC	4 cut(s)	11, 83, 266, 401
BsiEI	CGRYCG	1 cut(s)	449
BsiSI	CCGG	5 cut(s)	30, 153, 197, 336, 380
BslI	CCNNNNNNNGG	3 cut(s)	30, 55, 238
BsmAI	GTCTC	3 cut(s)	179, 362, 591
BsmBI	CGTCTC	2 cut(s)	179, 362
BsnI	GGCC	4 cut(s)	11, 83, 266, 401
Bsp143I	GATC	2 cut(s)	216, 487
BspACI	CCGC	6 cut(s)	24, 27, 62, 79, 245, 262
BspANI	GGCC	4 cut(s)	11, 83, 266, 401
BspCNI	CTCAG	2 cut(s)	418, 570
BspLI	GGNNCC	1 cut(s)	433
BspMI	ACCTGC	1 cut(s)	382
BsrDI	GCAATG	3 cut(s)	210, 393, 472
BsrI	ACTGG	1 cut(s)	402
BssECI	CCNNGG	2 cut(s)	84, 267
BssMI	GATC	2 cut(s)	216, 487
BssNI	GRCGYC	4 cut(s)	39, 188, 222, 371
Bst2UI	CCWGG	2 cut(s)	85, 268
BstACI	GRCGYC	4 cut(s)	39, 188, 222, 371
BstC8I	GCNNGC	4 cut(s)	81, 105, 264, 288
BstDEI	CTNAG	3 cut(s)	426, 557, 594
BstF5I	GGATG	2 cut(s)	319, 543
BstH2I	RGCGCY	4 cut(s)	49, 95, 232, 278
BstHHI	GCGC	4 cut(s)	48, 94, 231, 277
BstKTI	GATC	2 cut(s)	219, 490
BstMAI	GTCTC	3 cut(s)	179, 362, 591
BstMBI	GATC	2 cut(s)	216, 487
BstMCI	CGRYCG	1 cut(s)	449
BstMWI	GCNNNNNNNGC	6 cut(s)	23, 89, 100, 272, 283, 407
BstNI	CCWGG	2 cut(s)	85, 268
BstNSI	RCATGY	1 cut(s)	525
BstSCI	CCNGG	3 cut(s)	29, 83, 266
BstV1I	GCAGC	4 cut(s)	178, 187, 361, 370
BsuRI	GGCC	4 cut(s)	11, 83, 266, 401
BtrI	CACGTC	2 cut(s)	52, 235
BtsCI	GGATG	2 cut(s)	319, 543
BveI	ACCTGC	1 cut(s)	382
Cac8I	GCNNGC	4 cut(s)	81, 105, 264, 288
CaiI	CAGNNNCTG	1 cut(s)	397
CfoI	GCGC	4 cut(s)	48, 94, 231, 277
Cfr13I	GGNCC	2 cut(s)	81, 264
CseI	GACGC	4 cut(s)	47, 196, 230, 379
CviAII	CATG	1 cut(s)	522
CviJI	RGCY	8 cut(s)	11, 83, 200, 266, 383, 401, 410, 506
CviKI_1	RGCY	8 cut(s)	11, 83, 200, 266, 383, 401, 410, 506
DdeI	CTNAG	3 cut(s)	426, 557, 594
DpnI	GATC	2 cut(s)	218, 489
DpnII	GATC	2 cut(s)	216, 487
EaeI	YGGCCR	1 cut(s)	399
EcoRI	GAATTC	2 cut(s)	148, 331
EcoRII	CCWGG	2 cut(s)	83, 266
Esp3I	CGTCTC	2 cut(s)	179, 362
FaeI	CATG	1 cut(s)	525
FaiI	YATR	2 cut(s)	419, 523
FatI	CATG	1 cut(s)	521
FauI	CCCGC	2 cut(s)	72, 255
FblI	GTMKAC	2 cut(s)	68, 251
Fnu4HI	GCNGC	6 cut(s)	24, 27, 167, 201, 350, 384
FokI	GGATG	2 cut(s)	326, 550
Fsp4HI	GCNGC	6 cut(s)	24, 27, 167, 201, 350, 384
FspBI	CTAG	2 cut(s)	278, 575
GlaI	GCGC	4 cut(s)	47, 93, 230, 276
GluI	GCNGC	6 cut(s)	24, 27, 167, 201, 350, 384
GsuI	CTGGAG	1 cut(s)	116
HaeII	RGCGCY	4 cut(s)	49, 95, 232, 278
HaeIII	GGCC	4 cut(s)	11, 83, 266, 401
HapII	CCGG	5 cut(s)	30, 153, 197, 336, 380
HgaI	GACGC	4 cut(s)	47, 196, 230, 379
HhaI	GCGC	4 cut(s)	48, 94, 231, 277
Hin1I	GRCGYC	4 cut(s)	39, 188, 222, 371
Hin1II	CATG	1 cut(s)	525
Hin6I	GCGC	4 cut(s)	46, 92, 229, 275
HinP1I	GCGC	4 cut(s)	46, 92, 229, 275
HincII	GTYRAC	2 cut(s)	69, 252
HindII	GTYRAC	2 cut(s)	69, 252
HinfI	GANTC	5 cut(s)	193, 376, 451, 492, 584
HpaII	CCGG	5 cut(s)	30, 153, 197, 336, 380
HphI	GGTGA	5 cut(s)	127, 226, 310, 497, 593
Hpy166II	GTNNAC	2 cut(s)	69, 252
Hpy188I	TCNGA	2 cut(s)	184, 367
Hpy8I	GTNNAC	2 cut(s)	69, 252
Hpy99I	CGWCG	6 cut(s)	17, 23, 41, 73, 224, 256
HpyAV	CCTTC	4 cut(s)	121, 304, 473, 494
HpyCH4IV	ACGT	2 cut(s)	51, 234
HpyCH4V	TGCA	6 cut(s)	203, 208, 386, 391, 460, 527
HpyF10VI	GCNNNNNNNGC	6 cut(s)	23, 89, 100, 272, 283, 407
HpyF3I	CTNAG	3 cut(s)	426, 557, 594
HpySE526I	ACGT	2 cut(s)	51, 234
Hsp92I	GRCGYC	4 cut(s)	39, 188, 222, 371
Hsp92II	CATG	1 cut(s)	525
HspAI	GCGC	4 cut(s)	46, 92, 229, 275
Kzo9I	GATC	2 cut(s)	216, 487
LmnI	GCTCC	4 cut(s)	33, 163, 346, 503
Lsp1109I	GCAGC	4 cut(s)	178, 187, 361, 370
LweI	GCATC	1 cut(s)	543
MaeI	CTAG	2 cut(s)	278, 575
MaeII	ACGT	2 cut(s)	51, 234
MalI	GATC	2 cut(s)	218, 489
MboI	GATC	2 cut(s)	216, 487
MboII	GAAGA	2 cut(s)	85, 268
MlsI	TGGCCA	1 cut(s)	401
MluCI	AATT	2 cut(s)	148, 331
MluNI	TGGCCA	1 cut(s)	401
MlyI	GAGTC	2 cut(s)	501, 593
Mox20I	TGGCCA	1 cut(s)	401
MscI	TGGCCA	1 cut(s)	401
Msp20I	TGGCCA	1 cut(s)	401
MspI	CCGG	5 cut(s)	30, 153, 197, 336, 380
MspR9I	CCNGG	3 cut(s)	31, 85, 268
MvaI	CCWGG	2 cut(s)	85, 268
MwoI	GCNNNNNNNGC	6 cut(s)	23, 89, 100, 272, 283, 407
NciI	CCSGG	1 cut(s)	31
NdeII	GATC	2 cut(s)	216, 487
NlaIII	CATG	1 cut(s)	525
NlaIV	GGNNCC	1 cut(s)	433
NmeAIII	GCCGAG	2 cut(s)	67, 250
NspI	RCATGY	1 cut(s)	525
PfeI	GAWTC	3 cut(s)	193, 376, 451
PkrI	GCNGC	6 cut(s)	25, 28, 168, 202, 351, 385
PleI	GAGTC	2 cut(s)	500, 592
PpsI	GAGTC	2 cut(s)	500, 592
Psp6I	CCWGG	2 cut(s)	83, 266
PspGI	CCWGG	2 cut(s)	83, 266
PspN4I	GGNNCC	1 cut(s)	433
PspPI	GGNCC	2 cut(s)	81, 264
PstNI	CAGNNNCTG	1 cut(s)	397
SalI	GTCGAC	2 cut(s)	67, 250
SatI	GCNGC	6 cut(s)	24, 27, 167, 201, 350, 384
Sau3AI	GATC	2 cut(s)	216, 487
Sau96I	GGNCC	2 cut(s)	81, 264
SchI	GAGTC	2 cut(s)	501, 593
ScrFI	CCNGG	3 cut(s)	31, 85, 268
SfaNI	GCATC	1 cut(s)	543
Sse9I	AATT	2 cut(s)	148, 331
SsiI	CCGC	6 cut(s)	24, 27, 62, 79, 245, 262
SspMI	CTAG	2 cut(s)	278, 575
StyD4I	CCNGG	3 cut(s)	29, 83, 266
TaiI	ACGT	2 cut(s)	54, 237
TaqI	TCGA	4 cut(s)	68, 219, 251, 490
TaqII	GACCGA	1 cut(s)	463
TasI	AATT	2 cut(s)	148, 331
TauI	GCSGC	2 cut(s)	26, 29
TfiI	GAWTC	3 cut(s)	193, 376, 451
TseI	GCWGC	4 cut(s)	166, 200, 349, 383
TspDTI	ATGAA	4 cut(s)	17, 161, 344, 498
TspGWI	ACGGA	1 cut(s)	488
XapI	RAATTY	2 cut(s)	148, 331
XceI	RCATGY	1 cut(s)	525
XcmI	CCANNNNNNNNNTGG	1 cut(s)	91
XmiI	GTMKAC	2 cut(s)	68, 251
XspI	CTAG	2 cut(s)	278, 575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.