Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0009933

Physical Location & Seq

Genomic Coordinates Reverse (-)

51033860 .. 51035151

Gene Structure 1292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00369160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGTGCGTCAAGTGCCCCTCCATCGCCCACAACGACTGCGCCGACTGCGCCTCCTTCGAGTGCCCTCCCTGCTCCCAATCCGCCTTCTCCTTCTTCAACTTCGACCGCAACAACGCCGGCGGCGGCGACGCGGCGGCGATGCTCCTCGGGAAGGAATCCGCCAAGGCCTTCGTCGCCGCGGCGAAAATCGCGGCCAATTCGATGAAGAAGGCCGCCGCGGCCGCCAGGAGCGACGCCGAGCGCCGCGTCAAGGAGGCGGTCTCGGCGAAGAAGAGGGCGAGGGAGGCGCTGGAGGTGCTGGCGTTTCTGGTGAATAAAGAAAAGGAGGAGAAGGATTCGAAAGGCGGAGGAGAGCTGAATTCGGGTAGAGTGGAGCACCAGAAGCAGAAATCGGAGACGAATCCCGGTGCAATGCAAGTTCTGGCCAACCTTGCTACTTCTATGGCGACCGAGGGAACCAATGGGGTGCGAGGTAATCAATTGCAGACCAATGATATGCAGGAAGGAGGTGATCAAGTCAAGGAAGGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

177

Amino Acids

18.6

Weight (kDa)

7.57

Isoelectric Point (pI)

32.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17460
fragaria_vesca	FvH4_2g22261 FvH4_3g29111 FvH4_6g06731 FvH4_7g12701
malus_domestica	MD13G1139400.v1.1 MD16G1136300.v1.1
prunus_persica	Prupe.1G105300_v2.0.a1 Prupe.1G105300_v2.0.a1
pyrus_communis	pycom16g11990
rosa_chinensis	RchiOBHm_Chr4g0427521
rosa_laevigata	RLG00000007231
rosa_multiflora	Rmu_sc0001006.1_g000001 Rmu_sc0009627.1_g000002
rosa_roxburghii	Rroxscaffold_5G00369160
rosa_rugosa	Rorug04G0218300
rosa_samantha	Rh4AG274800 Rh4BG280600 Rh4CG295900 Rh4DG278000
rosa_wichuraiana	Rw4G023820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	5 cut(s)	131, 179, 191, 218, 246
AcoI	YGGCCR	3 cut(s)	192, 219, 423
AcsI	RAATTY	1 cut(s)	358
AcyI	GRCGYC	1 cut(s)	234
AfiI	CCNNNNNNNGG	2 cut(s)	151, 250
AgsI	TTSAA	1 cut(s)	97
AjnI	CCWGG	1 cut(s)	224
AluBI	AGCT	2 cut(s)	355, 530
AluI	AGCT	2 cut(s)	355, 530
Alw21I	GWGCWC	1 cut(s)	378
Alw26I	GTCTC	2 cut(s)	265, 389
Ama87I	CYCGRG	1 cut(s)	146
AoxI	GGCC	5 cut(s)	165, 192, 210, 219, 423
ApoI	RAATTY	1 cut(s)	358
AspLEI	GCGC	4 cut(s)	41, 50, 243, 289
AsuC2I	CCSGG	1 cut(s)	405
AsuHPI	GGTGA	2 cut(s)	322, 521
AsuII	TTCGAA	1 cut(s)	338
AvaI	CYCGRG	1 cut(s)	146
BaeGI	GKGCMC	2 cut(s)	17, 65
BalI	TGGCCA	1 cut(s)	425
Bbv12I	GWGCWC	1 cut(s)	378
BccI	CCATC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	226
BclI	TGATCA	1 cut(s)	511
BcnI	CCSGG	1 cut(s)	405
BcoDI	GTCTC	2 cut(s)	265, 389
BfoI	RGCGCY	2 cut(s)	244, 290
BglI	GCCNNNNNGGC	1 cut(s)	218
Bme1390I	CCNGG	2 cut(s)	226, 405
BmeT110I	CYCGRG	1 cut(s)	146
BmiI	GGNNCC	1 cut(s)	457
BmrFI	CCNGG	2 cut(s)	226, 405
BmsI	GCATC	1 cut(s)	129
BplI	GAGNNNNNCTC	2 cut(s)	245, 277
BpmI	CTGGAG	1 cut(s)	311
Bpu14I	TTCGAA	1 cut(s)	338
BpuMI	CCSGG	1 cut(s)	405
BsaHI	GRCGYC	1 cut(s)	234
BsaI	GGTCTC	1 cut(s)	265
BsaJI	CCNNGG	5 cut(s)	145, 162, 177, 216, 450
BsaXI	ACNNNNNCTCC	2 cut(s)	35, 65
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 250
Bse118I	RCCGGY	1 cut(s)	116
Bse3DI	GCAATG	1 cut(s)	417
BseBI	CCWGG	1 cut(s)	226
BseDI	CCNNGG	5 cut(s)	145, 162, 177, 216, 450
BseLI	CCNNNNNNNGG	2 cut(s)	151, 250
BseMI	GCAATG	1 cut(s)	417
BseRI	GAGGAG	3 cut(s)	134, 341, 363
BseSI	GKGCMC	2 cut(s)	17, 65
BseX3I	CGGCCG	1 cut(s)	219
Bsh1236I	CGCG	5 cut(s)	131, 179, 191, 218, 246
Bsh1285I	CGRYCG	3 cut(s)	106, 222, 450
BshFI	GGCC	5 cut(s)	167, 194, 212, 221, 425
BsiEI	CGRYCG	3 cut(s)	106, 222, 450
BsiHKAI	GWGCWC	1 cut(s)	378
BsiHKCI	CYCGRG	1 cut(s)	146
BsiSI	CCGG	2 cut(s)	117, 405
BslI	CCNNNNNNNGG	2 cut(s)	151, 250
BsmAI	GTCTC	2 cut(s)	265, 389
BsmBI	CGTCTC	1 cut(s)	389
BsnI	GGCC	5 cut(s)	167, 194, 212, 221, 425
Bso31I	GGTCTC	1 cut(s)	265
BsoBI	CYCGRG	1 cut(s)	146
Bsp119I	TTCGAA	1 cut(s)	338
Bsp1286I	GDGCHC	3 cut(s)	17, 65, 378
Bsp143I	GATC	1 cut(s)	511
BspANI	GGCC	5 cut(s)	167, 194, 212, 221, 425
BspFNI	CGCG	5 cut(s)	131, 179, 191, 218, 246
BspLI	GGNNCC	1 cut(s)	457
BspT104I	TTCGAA	1 cut(s)	338
BspTNI	GGTCTC	1 cut(s)	265
BsrDI	GCAATG	1 cut(s)	417
BsrFI	RCCGGY	1 cut(s)	116
BssAI	RCCGGY	1 cut(s)	116
BssECI	CCNNGG	5 cut(s)	145, 162, 177, 216, 450
BssMI	GATC	1 cut(s)	511
BssNI	GRCGYC	1 cut(s)	234
BssT1I	CCWWGG	1 cut(s)	162
Bst2UI	CCWGG	1 cut(s)	226
Bst6I	CTCTTC	1 cut(s)	266
BstACI	GRCGYC	1 cut(s)	234
BstBI	TTCGAA	1 cut(s)	338
BstC8I	GCNNGC	2 cut(s)	118, 300
BstDSI	CCRYGG	2 cut(s)	177, 216
BstENI	CCTNNNNNAGG	1 cut(s)	149
BstFNI	CGCG	5 cut(s)	131, 179, 191, 218, 246
BstH2I	RGCGCY	2 cut(s)	244, 290
BstHHI	GCGC	4 cut(s)	41, 50, 243, 289
BstKTI	GATC	1 cut(s)	514
BstMAI	GTCTC	2 cut(s)	265, 389
BstMBI	GATC	1 cut(s)	511
BstMCI	CGRYCG	3 cut(s)	106, 222, 450
BstNI	CCWGG	1 cut(s)	226
BstSCI	CCNGG	2 cut(s)	224, 403
BstSLI	GKGCMC	2 cut(s)	17, 65
BstUI	CGCG	5 cut(s)	131, 179, 191, 218, 246
BstZI	CGGCCG	1 cut(s)	219
BsuRI	GGCC	5 cut(s)	167, 194, 212, 221, 425
BtgI	CCRYGG	2 cut(s)	177, 216
BtgZI	GCGATG	2 cut(s)	7, 152
Cac8I	GCNNGC	2 cut(s)	118, 300
CciNI	GCGGCCGC	1 cut(s)	219
CfoI	GCGC	4 cut(s)	41, 50, 243, 289
Cfr10I	RCCGGY	1 cut(s)	116
Cfr42I	CCGCGG	2 cut(s)	180, 219
CseI	GACGC	3 cut(s)	137, 235, 242
CviJI	RGCY	7 cut(s)	167, 194, 212, 221, 355, 425, 530
CviKI_1	RGCY	7 cut(s)	167, 194, 212, 221, 355, 425, 530
DpnI	GATC	1 cut(s)	513
DpnII	GATC	1 cut(s)	511
EaeI	YGGCCR	3 cut(s)	192, 219, 423
EagI	CGGCCG	1 cut(s)	219
Eam1104I	CTCTTC	1 cut(s)	266
EarI	CTCTTC	1 cut(s)	266
EciI	GGCGGA	3 cut(s)	70, 148, 360
EclXI	CGGCCG	1 cut(s)	219
Eco130I	CCWWGG	1 cut(s)	162
Eco147I	AGGCCT	1 cut(s)	167
Eco31I	GGTCTC	1 cut(s)	265
Eco52I	CGGCCG	1 cut(s)	219
Eco88I	CYCGRG	1 cut(s)	146
EcoNI	CCTNNNNNAGG	1 cut(s)	149
EcoRI	GAATTC	1 cut(s)	358
EcoRII	CCWGG	1 cut(s)	224
EcoT14I	CCWWGG	1 cut(s)	162
ErhI	CCWWGG	1 cut(s)	162
Esp3I	CGTCTC	1 cut(s)	389
FaiI	YATR	2 cut(s)	443, 497
FbaI	TGATCA	1 cut(s)	511
GlaI	GCGC	4 cut(s)	40, 49, 242, 288
GsuI	CTGGAG	1 cut(s)	311
HaeII	RGCGCY	2 cut(s)	244, 290
HaeIII	GGCC	5 cut(s)	167, 194, 212, 221, 425
HapII	CCGG	2 cut(s)	117, 405
HgaI	GACGC	3 cut(s)	137, 235, 242
HhaI	GCGC	4 cut(s)	41, 50, 243, 289
Hin1I	GRCGYC	1 cut(s)	234
Hin6I	GCGC	4 cut(s)	39, 48, 241, 287
HinP1I	GCGC	4 cut(s)	39, 48, 241, 287
HinfI	GANTC	3 cut(s)	155, 335, 400
HpaII	CCGG	2 cut(s)	117, 405
HphI	GGTGA	2 cut(s)	322, 521
Hpy188I	TCNGA	1 cut(s)	394
Hpy188III	TCNNGA	1 cut(s)	148
Hpy99I	CGWCG	3 cut(s)	131, 176, 236
HpyAV	CCTTC	9 cut(s)	64, 94, 100, 145, 178, 202, 325, 497, 518
HpyCH4V	TGCA	4 cut(s)	410, 415, 484, 499
Hsp92I	GRCGYC	1 cut(s)	234
HspAI	GCGC	4 cut(s)	39, 48, 241, 287
KroI	GCCGGC	1 cut(s)	116
KroNI	GCCGGC	1 cut(s)	118
Ksp22I	TGATCA	1 cut(s)	511
KspI	CCGCGG	2 cut(s)	180, 219
Kzo9I	GATC	1 cut(s)	511
LmnI	GCTCC	5 cut(s)	77, 147, 228, 373, 527
LweI	GCATC	1 cut(s)	129
MalI	GATC	1 cut(s)	513
MboI	GATC	1 cut(s)	511
MboII	GAAGA	4 cut(s)	85, 217, 280, 283
MfeI	CAATTG	1 cut(s)	479
MhlI	GDGCHC	3 cut(s)	17, 65, 378
MlsI	TGGCCA	1 cut(s)	425
MluCI	AATT	3 cut(s)	196, 358, 479
MluNI	TGGCCA	1 cut(s)	425
Mox20I	TGGCCA	1 cut(s)	425
MreI	CGCCGGCG	1 cut(s)	116
MroNI	GCCGGC	1 cut(s)	116
MscI	TGGCCA	1 cut(s)	425
Msp20I	TGGCCA	1 cut(s)	425
MspA1I	CMGCKG	2 cut(s)	179, 218
MspI	CCGG	2 cut(s)	117, 405
MspR9I	CCNGG	2 cut(s)	226, 405
MunI	CAATTG	1 cut(s)	479
MvaI	CCWGG	1 cut(s)	226
MvnI	CGCG	5 cut(s)	131, 179, 191, 218, 246
NaeI	GCCGGC	1 cut(s)	118
NciI	CCSGG	1 cut(s)	405
NdeII	GATC	1 cut(s)	511
NgoMIV	GCCGGC	1 cut(s)	116
NlaIV	GGNNCC	1 cut(s)	457
NmeAIII	GCCGAG	2 cut(s)	242, 262
NotI	GCGGCCGC	1 cut(s)	219
NspV	TTCGAA	1 cut(s)	338
PceI	AGGCCT	1 cut(s)	167
PcsI	WCGNNNNNNNCGW	2 cut(s)	30, 39
PdiI	GCCGGC	1 cut(s)	118
PfeI	GAWTC	3 cut(s)	155, 335, 400
Psp6I	CCWGG	1 cut(s)	224
PspGI	CCWGG	1 cut(s)	224
PspN4I	GGNNCC	1 cut(s)	457
SacII	CCGCGG	2 cut(s)	180, 219
Sau3AI	GATC	1 cut(s)	511
ScrFI	CCNGG	2 cut(s)	226, 405
SduI	GDGCHC	3 cut(s)	17, 65, 378
SetI	ASST	6 cut(s)	297, 357, 432, 475, 511, 532
SfaNI	GCATC	1 cut(s)	129
SfiI	GGCCNNNNNGGCC	1 cut(s)	218
Sfr303I	CCGCGG	2 cut(s)	180, 219
SfuI	TTCGAA	1 cut(s)	338
SgrAI	CRCCGGYG	1 cut(s)	116
SgrBI	CCGCGG	2 cut(s)	180, 219
Sse9I	AATT	3 cut(s)	196, 358, 479
SseBI	AGGCCT	1 cut(s)	167
StuI	AGGCCT	1 cut(s)	167
StyD4I	CCNGG	2 cut(s)	224, 403
StyI	CCWWGG	1 cut(s)	162
TaqI	TCGA	4 cut(s)	57, 102, 200, 338
TaqII	GACCGA	1 cut(s)	464
TasI	AATT	3 cut(s)	196, 358, 479
TfiI	GAWTC	3 cut(s)	155, 335, 400
TspDTI	ATGAA	1 cut(s)	218
XagI	CCTNNNNNAGG	1 cut(s)	149
XapI	RAATTY	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.