AT3G17465

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012310
Physical Location & Seq
Reverse (-)
5977722 .. 5979694
1973 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G17465.1

Sequence Viewer

Length: 975 bp
ATGGCGGCCGTACCGAGAGGCCTCCTTTCTCGAATCAATCAGTTTCTATCAATACGGTCTATAACTCCTTCATCCTCTGAATCTCTTCCTCATTGTAGTAGCTTCTTTCTCATCCGACGATTCAGCTCCGATACTGGGTTGATGGACGGTGGTGGATCTGATATTATCGGGGCTCAGACCCGAATCATTGAGGCGAAACAAGGTGAGATGTCTAGTAGATCCAAGAGGACTGGGATCATCGCGGTTAAGTGTGGGATGACTGCGCTCTGGGACAAATGGGGAAAGAGGATTCCGATTTCTATTCTTTGGGTTGATGATAATATCGTCTCTCAGGTTAAAACTGTTGAGAAAGAAGGCATTTTTGCGTTACAGATCGGATGTGGGCAAAAGAAACCGAAGCATTTGTCAAAAGCTGTGGTGGGGCATTTCAGAGCACAAGGTGTGCCGTTAAAGAGGAAGTTGAGGGAATTTCCTGTGACTGAAGACGCTCTTCTTCCTGTTGGTACTTCACTCGGTGTCCGCCATTTTGTTCCGGGACAGTACGTTGATGTCACTGGGATCACTCGAGGAAAAGGTTTTCAGGGATGCATGAAAAGACATGGTTTCAGTGGAATGCCGGCATCACATGGTGCTTCATTGTCCCATCGAAGCGGGGGTTCCACAGGGCAAAGAGATGCTCCTGGAAAGGTGTTCAAGGGCAGAAAGATGGCTGGGAGAATGGGTGCAGATCAGAGGACAGTAAAGAACGTTTGGGTCTACAAGATCGATCCTGCGAGGAACCTCATGTGGGTGAGAGGACAAGTTCCTGGTGCAGAAGGAAACTTTGTGTTCATAAAAGATGCATGGTGCAAGAAACCAGACATCTCAAAGCTTCCGTTTCCAACTTACTTAGCTCCAGAAGATGAAGATCCATCAGAATTAGAACCGTTGGTTGCAGATCTTGGAGAAGTTGACCCATTTATGTTGGCAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L3

Protein Analysis

324

Amino Acids

35.4

Weight (kDa)

9.74

Isoelectric Point (pI)

38.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L3 PF00297 174 - 257 4.9e-16 Ribosomal protein L3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012310)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17465
fragaria_vesca FvH4_4g21510
malus_domestica MD13G1139500.v1.1 MD16G1136200.v1.1
prunus_persica Prupe.1G105200_v2.0.a1
pyrus_communis pycom13g12130 pycom16g11980
rosa_chinensis RchiOBHm_Chr4g0427531
rosa_laevigata RLG00000007230
rosa_multiflora Rmu_sc0009627.1_g000003 Rmu_sc0020720.1_g000001
rosa_roxburghii Rroxscaffold_5G00369170
rosa_rugosa Rorug04G0218400 Rorug04G0218400
rosa_samantha Rh4AG274900 Rh4BG280700 Rh4CG296000 Rh4DG278100
rosa_wichuraiana Rw4G023830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 756
AccII CGCG 1 cut(s) 242
AciI CCGC 4 cut(s) 5, 242, 520, 651
AclI AACGTT 1 cut(s) 747
AclWI GGATC 6 cut(s) 163, 213, 242, 566, 761, 902
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 1 cut(s) 467
AcuI CTGAAG 1 cut(s) 501
AdeI CACNNNGTG 3 cut(s) 440, 515, 629
AfaI GTAC 3 cut(s) 12, 505, 542
AfiI CCNNNNNNNGG 2 cut(s) 135, 787
AgsI TTSAA 1 cut(s) 694
AjnI CCWGG 2 cut(s) 679, 805
AluBI AGCT 5 cut(s) 102, 126, 413, 871, 893
AluI AGCT 5 cut(s) 102, 126, 413, 871, 893
Alw21I GWGCWC 1 cut(s) 436
Alw26I GTCTC 1 cut(s) 331
AlwI GGATC 6 cut(s) 163, 213, 242, 566, 761, 902
Ama87I CYCGRG 1 cut(s) 564
AoxI GGCC 2 cut(s) 6, 19
ApoI RAATTY 1 cut(s) 467
ArsI GACNNNNNNTTYG 2 cut(s) 389, 421
Asp700I GAANNNNTTC 1 cut(s) 84
AspLEI GCGC 1 cut(s) 265
AsuC2I CCSGG 1 cut(s) 534
AsuHPI GGTGA 2 cut(s) 215, 802
AvaI CYCGRG 1 cut(s) 564
BanII GRGCYC 1 cut(s) 175
BbsI GAAGAC 1 cut(s) 489
Bbv12I GWGCWC 1 cut(s) 436
BccI CCATC 4 cut(s) 136, 651, 700, 919
BceAI ACGGC 1 cut(s) 430
BciT130I CCWGG 2 cut(s) 681, 807
BcnI CCSGG 1 cut(s) 534
BcoDI GTCTC 1 cut(s) 331
BfaI CTAG 1 cut(s) 213
BglII AGATCT 1 cut(s) 937
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 3 cut(s) 534, 681, 807
BmeT110I CYCGRG 1 cut(s) 564
BmiI GGNNCC 2 cut(s) 658, 779
BmrFI CCNGG 3 cut(s) 534, 681, 807
BmrI ACTGGG 3 cut(s) 144, 240, 564
BmsI GCATC 4 cut(s) 575, 629, 664, 829
BmuI ACTGGG 3 cut(s) 144, 240, 564
BpiI GAAGAC 1 cut(s) 489
BpmI CTGGAG 1 cut(s) 879
BpuMI CCSGG 1 cut(s) 534
Bsa29I ATCGAT 1 cut(s) 765
BsaBI GATNNNNATC 1 cut(s) 906
BsaXI ACNNNNNCTCC 2 cut(s) 706, 736
Bsc4I CCNNNNNNNGG 2 cut(s) 135, 787
Bse118I RCCGGY 1 cut(s) 616
Bse1I ACTGG 3 cut(s) 139, 235, 559
Bse8I GATNNNNATC 1 cut(s) 906
BseBI CCWGG 2 cut(s) 681, 807
BseCI ATCGAT 1 cut(s) 765
BseGI GGATG 5 cut(s) 71, 111, 261, 383, 590
BseJI GATNNNNATC 1 cut(s) 906
BseLI CCNNNNNNNGG 2 cut(s) 135, 787
BseMII CTCAG 2 cut(s) 188, 344
BseNI ACTGG 3 cut(s) 139, 235, 559
BseX3I CGGCCG 1 cut(s) 6
BseYI CCCAGC 1 cut(s) 710
BsgI GTGCAG 2 cut(s) 744, 831
Bsh1236I CGCG 1 cut(s) 242
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 2 cut(s) 8, 21
BshVI ATCGAT 1 cut(s) 765
BsiEI CGRYCG 1 cut(s) 9
BsiHKAI GWGCWC 1 cut(s) 436
BsiHKCI CYCGRG 1 cut(s) 564
BsiSI CCGG 2 cut(s) 533, 617
BslFI GGGAC 3 cut(s) 284, 549, 625
BslI CCNNNNNNNGG 2 cut(s) 135, 787
BsmAI GTCTC 1 cut(s) 331
BsmBI CGTCTC 1 cut(s) 331
BsmFI GGGAC 3 cut(s) 284, 549, 625
BsmI GAATGC 1 cut(s) 618
BsnI GGCC 2 cut(s) 8, 21
BsoBI CYCGRG 1 cut(s) 564
Bsp1286I GDGCHC 2 cut(s) 175, 436
BspACI CCGC 4 cut(s) 5, 242, 520, 651
BspANI GGCC 2 cut(s) 8, 21
BspCNI CTCAG 2 cut(s) 187, 343
BspDI ATCGAT 1 cut(s) 765
BspFNI CGCG 1 cut(s) 242
BspLI GGNNCC 2 cut(s) 658, 779
BspPI GGATC 6 cut(s) 163, 213, 242, 566, 761, 902
BspQI GCTCTTC 1 cut(s) 495
BsrFI RCCGGY 1 cut(s) 616
BsrI ACTGG 3 cut(s) 139, 235, 559
BssAI RCCGGY 1 cut(s) 616
Bst2UI CCWGG 2 cut(s) 681, 807
Bst4CI ACNGT 6 cut(s) 57, 149, 343, 540, 739, 927
Bst6I CTCTTC 2 cut(s) 90, 495
BstC8I GCNNGC 1 cut(s) 618
BstDEI CTNAG 3 cut(s) 174, 330, 889
BstF5I GGATG 5 cut(s) 71, 111, 261, 383, 590
BstFNI CGCG 1 cut(s) 242
BstHHI GCGC 1 cut(s) 265
BstMAI GTCTC 1 cut(s) 331
BstMCI CGRYCG 1 cut(s) 9
BstNI CCWGG 2 cut(s) 681, 807
BstSCI CCNGG 3 cut(s) 532, 679, 805
BstUI CGCG 1 cut(s) 242
BstV2I GAAGAC 1 cut(s) 489
BstX2I RGATCY 4 cut(s) 155, 218, 907, 937
BstYI RGATCY 4 cut(s) 155, 218, 907, 937
BstZI CGGCCG 1 cut(s) 6
Bsu15I ATCGAT 1 cut(s) 765
BsuRI GGCC 2 cut(s) 8, 21
BsuTUI ATCGAT 1 cut(s) 765
BtgZI GCGATG 1 cut(s) 223
BtsCI GGATG 5 cut(s) 71, 111, 261, 383, 590
BtsIMutI CAGTG 2 cut(s) 552, 613
Cac8I GCNNGC 1 cut(s) 618
CfoI GCGC 1 cut(s) 265
Cfr10I RCCGGY 1 cut(s) 616
ClaI ATCGAT 1 cut(s) 765
CseI GACGC 1 cut(s) 494
Csp6I GTAC 3 cut(s) 11, 504, 541
CspCI CAANNNNNGTGG 2 cut(s) 396, 431
CviAII CATG 5 cut(s) 589, 599, 626, 784, 843
CviJI RGCY 9 cut(s) 8, 21, 102, 126, 173, 413, 710, 871, 893
CviKI_1 RGCY 9 cut(s) 8, 21, 102, 126, 173, 413, 710, 871, 893
CviQI GTAC 3 cut(s) 11, 504, 541
DdeI CTNAG 3 cut(s) 174, 330, 889
DraIII CACNNNGTG 3 cut(s) 440, 515, 629
EaeI YGGCCR 1 cut(s) 6
EagI CGGCCG 1 cut(s) 6
Eam1104I CTCTTC 2 cut(s) 90, 495
EarI CTCTTC 2 cut(s) 90, 495
EciI GGCGGA 1 cut(s) 509
EclXI CGGCCG 1 cut(s) 6
Eco147I AGGCCT 1 cut(s) 21
Eco24I GRGCYC 1 cut(s) 175
Eco52I CGGCCG 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 501
Eco88I CYCGRG 1 cut(s) 564
EcoRII CCWGG 2 cut(s) 679, 805
EcoT22I ATGCAT 2 cut(s) 590, 844
EcoT38I GRGCYC 1 cut(s) 175
Esp3I CGTCTC 1 cut(s) 331
FaeI CATG 5 cut(s) 592, 602, 629, 787, 846
FaiI YATR 8 cut(s) 62, 590, 600, 627, 785, 833, 844, 962
FalI AAGNNNNNCTT 2 cut(s) 474, 506
FaqI GGGAC 3 cut(s) 284, 549, 625
FatI CATG 5 cut(s) 588, 598, 625, 783, 842
FauI CCCGC 1 cut(s) 644
FblI GTMKAC 1 cut(s) 756
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 5 cut(s) 58, 98, 268, 390, 597
FriOI GRGCYC 1 cut(s) 175
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 1 cut(s) 213
GlaI GCGC 1 cut(s) 264
GluI GCNGC 1 cut(s) 6
GsaI CCCAGC 1 cut(s) 714
GsuI CTGGAG 1 cut(s) 879
HaeIII GGCC 2 cut(s) 8, 21
HapII CCGG 2 cut(s) 533, 617
HgaI GACGC 1 cut(s) 494
HhaI GCGC 1 cut(s) 265
Hin1II CATG 5 cut(s) 592, 602, 629, 787, 846
Hin6I GCGC 1 cut(s) 263
HinP1I GCGC 1 cut(s) 263
HincII GTYRAC 1 cut(s) 952
HindII GTYRAC 1 cut(s) 952
HindIII AAGCTT 1 cut(s) 869
HinfI GANTC 5 cut(s) 33, 80, 120, 183, 289
HpaII CCGG 2 cut(s) 533, 617
HphI GGTGA 2 cut(s) 215, 802
Hpy166II GTNNAC 2 cut(s) 757, 952
Hpy188III TCNNGA 2 cut(s) 30, 896
Hpy8I GTNNAC 2 cut(s) 757, 952
Hpy99I CGWCG 1 cut(s) 120
HpyAV CCTTC 3 cut(s) 78, 347, 809
HpyCH4III ACNGT 6 cut(s) 57, 149, 343, 540, 739, 927
HpyCH4IV ACGT 2 cut(s) 543, 747
HpyCH4V TGCA 6 cut(s) 588, 725, 812, 842, 849, 935
HpyF3I CTNAG 3 cut(s) 174, 330, 889
HpySE526I ACGT 2 cut(s) 543, 747
Hsp92II CATG 5 cut(s) 592, 602, 629, 787, 846
HspAI GCGC 1 cut(s) 263
KroI GCCGGC 1 cut(s) 616
KroNI GCCGGC 1 cut(s) 618
LguI GCTCTTC 1 cut(s) 495
LmnI GCTCC 3 cut(s) 131, 682, 898
LweI GCATC 4 cut(s) 575, 629, 664, 829
MaeI CTAG 1 cut(s) 213
MaeII ACGT 2 cut(s) 543, 747
MaeIII GTNAC 3 cut(s) 366, 475, 550
MboII GAAGA 6 cut(s) 77, 482, 485, 494, 911, 917
MflI RGATCY 4 cut(s) 155, 218, 907, 937
MhlI GDGCHC 2 cut(s) 175, 436
MluCI AATT 2 cut(s) 467, 917
MmeI TCCRAC 2 cut(s) 139, 905
Mph1103I ATGCAT 2 cut(s) 590, 844
MroNI GCCGGC 1 cut(s) 616
MroXI GAANNNNTTC 1 cut(s) 84
MseI TTAA 3 cut(s) 246, 336, 449
MslI CAYNNNNRTG 1 cut(s) 788
MspI CCGG 2 cut(s) 533, 617
MspR9I CCNGG 3 cut(s) 534, 681, 807
Mva1269I GAATGC 1 cut(s) 618
MvaI CCWGG 2 cut(s) 681, 807
MvnI CGCG 1 cut(s) 242
NaeI GCCGGC 1 cut(s) 618
NciI CCSGG 1 cut(s) 534
NgoMIV GCCGGC 1 cut(s) 616
NlaIII CATG 5 cut(s) 592, 602, 629, 787, 846
NlaIV GGNNCC 2 cut(s) 658, 779
NmuCI GTSAC 2 cut(s) 475, 550
NsiI ATGCAT 2 cut(s) 590, 844
PaeR7I CTCGAG 1 cut(s) 564
PceI AGGCCT 1 cut(s) 21
PciSI GCTCTTC 1 cut(s) 495
PctI GAATGC 1 cut(s) 618
PdiI GCCGGC 1 cut(s) 618
PdmI GAANNNNTTC 1 cut(s) 84
PfeI GAWTC 5 cut(s) 33, 80, 120, 183, 289
PfoI TCCNGGA 2 cut(s) 532, 679
PkrI GCNGC 1 cut(s) 7
Psp1406I AACGTT 1 cut(s) 747
Psp6I CCWGG 2 cut(s) 679, 805
PspFI CCCAGC 1 cut(s) 710
PspGI CCWGG 2 cut(s) 679, 805
PspN4I GGNNCC 2 cut(s) 658, 779
PspXI VCTCGAGB 1 cut(s) 564
PsuI RGATCY 4 cut(s) 155, 218, 907, 937
RsaI GTAC 3 cut(s) 12, 505, 542
RsaNI GTAC 3 cut(s) 11, 504, 541
RseI CAYNNNNRTG 1 cut(s) 788
SapI GCTCTTC 1 cut(s) 495
SaqAI TTAA 3 cut(s) 246, 336, 449
SatI GCNGC 1 cut(s) 6
ScrFI CCNGG 3 cut(s) 534, 681, 807
SduI GDGCHC 2 cut(s) 175, 436
SfaNI GCATC 4 cut(s) 575, 629, 664, 829
Sfr274I CTCGAG 1 cut(s) 564
SlaI CTCGAG 1 cut(s) 564
SmiMI CAYNNNNRTG 1 cut(s) 788
SmlI CTYRAG 1 cut(s) 564
SmoI CTYRAG 1 cut(s) 564
Sse9I AATT 2 cut(s) 467, 917
SseBI AGGCCT 1 cut(s) 21
SsiI CCGC 4 cut(s) 5, 242, 520, 651
SspMI CTAG 1 cut(s) 213
StuI AGGCCT 1 cut(s) 21
StyD4I CCNGG 3 cut(s) 532, 679, 805
TaaI ACNGT 6 cut(s) 57, 149, 343, 540, 739, 927
TaiI ACGT 2 cut(s) 546, 750
TaqI TCGA 4 cut(s) 31, 565, 646, 765
TasI AATT 2 cut(s) 467, 917
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 5 cut(s) 33, 80, 120, 183, 289
Tru1I TTAA 3 cut(s) 246, 336, 449
Tru9I TTAA 3 cut(s) 246, 336, 449
TscAI CASTG 2 cut(s) 559, 613
TseFI GTSAC 2 cut(s) 475, 550
Tsp45I GTSAC 2 cut(s) 475, 550
TspDTI ATGAA 5 cut(s) 60, 605, 624, 820, 918
TspGWI ACGGA 1 cut(s) 864
TspRI CASTG 2 cut(s) 559, 613
XapI RAATTY 1 cut(s) 467
XhoI CTCGAG 1 cut(s) 564
XmiI GTMKAC 1 cut(s) 756
XmnI GAANNNNTTC 1 cut(s) 84
XspI CTAG 1 cut(s) 213
Zsp2I ATGCAT 2 cut(s) 590, 844
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.