Rmu_sc0009627.1_g000003

50S ribosomal protein L3-2

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009627.1
Physical Location & Seq
Reverse (-)
9215 .. 13120
3906 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009627.1_g000003.1.cds

Sequence Viewer

Length: 1386 bp
atgctggagaccagaaatggcggatacagatctatcacatgggatatgacaagaggaaatggtactcatctttctatttacttggcattggctgattggaaaccaattccttctgtgtccaaagaatttgtagcgtttacccttcgcctcgtagatcatgaaaagcatgccaagcataagtactcttggacaggtgaacatggtctcactgccaagtcgtcgtcgtggggcagcgctcagttcattagtctaagcatgcaagtaattctggaggcagagctcttccctaaagtcctaaaccctactctgcaacctgtgttggggtttccacatccgccatgccatcaaacccgtcgtcgttttaagcctccatctccgtcacccacatccgccatgtccgccttatcgagaggcctcattgcccgcctccgcctcttctccctcaacccggccacttcttcttcttcctcctcttctacttgtaccgctatacccgccgctcacgctacgacgacgtcgtattctcatttcttccgatgcttcagctccgaggccttggtggacggggccgagatcgccgaagatcgcagccgggttatcgaggccaggcccggagttatgaccccccaatcgaagcggaccggagtcatcgccgtcaagtgtggcatgtcggcgcgctgggacaaatggggtgctagggttccgatcaccgtgctttgggtcgatgataatatcgtctctcaggtcaaaaccccagagaaagaaggaatctctgccctacagattgggtgcgggcagaaaaaagcaaaacatctgacaaagcctgaagtgggccatttcagagctcagggtgttccacttaagaggaaactgcgggagtttccggtaacagaagatgcgcttctccctgttggtatgtcaattggtgttcgccattttgttccaggccaatatgttgatgttacaggaatcacgagagggaaaggttttcagggtgggatgaaaaggtatggttttagaggaatgccagcaagtcatggtgcctctaagtcgcaccgaagtattggttctacaggtcagagagatgatgctggaagggtctttaaaggcagaatgatgcccgggcgcatgggtggaaaacagagaacggtgaaaaatgtatggatctacaaaattgatcccgcaaggaacttgatatgggtgagaggccaggtcccaggtgctgaagggaactttgtgtttatcaaggatgctttctacaagaaacccgatgtctcgatgctaccatttccaacttactttgctccagaggatgaagatccaagcaagttagaaccgctggttgctgatcttggtgaagtagatccatttatggcggcagattag
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

461

Amino Acids

50.76

Weight (kDa)

9.86

Isoelectric Point (pI)

41.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012310)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 518
AccB1I GGYRCC 1 cut(s) 1040
AccBSI CCGCTC 1 cut(s) 500
AccII CGCG 1 cut(s) 676
AclWI GGATC 4 cut(s) 1172, 1172, 1313, 1358
AcoI YGGCCR 1 cut(s) 450
AcsI RAATTY 1 cut(s) 125
AcuI CTGAAG 3 cut(s) 526, 846, 1245
AcyI GRCGYC 1 cut(s) 515
AfaI GTAC 3 cut(s) 64, 182, 484
AfeI AGCGCT 1 cut(s) 235
AfiI CCNNNNNNNGG 4 cut(s) 320, 448, 717, 830
AflII CTTAAG 1 cut(s) 860
AjnI CCWGG 4 cut(s) 605, 943, 1209, 1216
AluBI AGCT 3 cut(s) 280, 546, 845
AluI AGCT 3 cut(s) 280, 546, 845
Alw21I GWGCWC 2 cut(s) 282, 847
Alw26I GTCTC 4 cut(s) 2, 209, 742, 1279
AlwI GGATC 4 cut(s) 1172, 1172, 1313, 1358
AlwNI CAGNNNCTG 1 cut(s) 1223
Ama87I CYCGRG 1 cut(s) 1121
Aor51HI AGCGCT 1 cut(s) 235
AoxI GGCC 9 cut(s) 412, 450, 552, 567, 603, 608, 832, 946, 1207
ApeKI GCWGC 2 cut(s) 231, 588
ApoI RAATTY 1 cut(s) 125
ArsI GACNNNNNNTTYG 2 cut(s) 340, 372
AspLEI GCGC 5 cut(s) 236, 676, 678, 901, 1128
AspS9I GGNCC 5 cut(s) 567, 609, 639, 832, 1213
AsuC2I CCSGG 5 cut(s) 449, 593, 612, 1122, 1123
AsuHPI GGTGA 6 cut(s) 206, 372, 700, 1162, 1213, 1367
AvaI CYCGRG 1 cut(s) 1121
AvaII GGWCC 2 cut(s) 639, 1213
BanI GGYRCC 1 cut(s) 1040
BanII GRGCYC 2 cut(s) 282, 847
BauI CACGAG 1 cut(s) 973
Bbv12I GWGCWC 2 cut(s) 282, 847
BbvI GCAGC 2 cut(s) 243, 600
BccI CCATC 2 cut(s) 351, 379
BceAI ACGGC 1 cut(s) 638
BcgI CGANNNNNNTGC 2 cut(s) 694, 728
BciT130I CCWGG 4 cut(s) 607, 945, 1211, 1218
BciVI GTATCC 1 cut(s) 17
BcnI CCSGG 5 cut(s) 449, 593, 612, 1122, 1123
BcoDI GTCTC 4 cut(s) 2, 209, 742, 1279
BfaI CTAG 1 cut(s) 696
BfmI CTRYAG 2 cut(s) 779, 1071
BfoI RGCGCY 1 cut(s) 237
BfrI CTTAAG 1 cut(s) 860
BfuI GTATCC 1 cut(s) 17
BglII AGATCT 1 cut(s) 29
BisI GCNGC 4 cut(s) 232, 498, 589, 1377
BlsI GCNGC 4 cut(s) 233, 499, 590, 1378
BmcAI AGTACT 1 cut(s) 182
Bme1390I CCNGG 9 cut(s) 449, 593, 607, 612, 945, 1122, 1123, 1211, 1218
Bme18I GGWCC 2 cut(s) 639, 1213
BmeT110I CYCGRG 1 cut(s) 1121
BmgT120I GGNCC 5 cut(s) 567, 609, 639, 832, 1213
BmiI GGNNCC 4 cut(s) 568, 702, 1042, 1215
BmrFI CCNGG 9 cut(s) 449, 593, 607, 612, 945, 1122, 1123, 1211, 1218
BmsI GCATC 6 cut(s) 527, 886, 1078, 1107, 1240, 1269
BoxI GACNNNNGTC 1 cut(s) 644
BpmI CTGGAG 3 cut(s) 26, 290, 1290
Bpu10I CCTNAGC 1 cut(s) 846
BpuMI CCSGG 5 cut(s) 449, 593, 612, 1122, 1123
BsaBI GATNNNNATC 2 cut(s) 28, 1317
BsaHI GRCGYC 1 cut(s) 515
BsaI GGTCTC 2 cut(s) 2, 209
BsaJI CCNNGG 4 cut(s) 549, 555, 1121, 1216
BsaWI WCCGGW 2 cut(s) 641, 883
Bsc4I CCNNNNNNNGG 4 cut(s) 320, 448, 717, 830
Bse3DI GCAATG 1 cut(s) 417
Bse8I GATNNNNATC 2 cut(s) 28, 1317
BseBI CCWGG 4 cut(s) 607, 945, 1211, 1218
BseDI CCNNGG 4 cut(s) 549, 555, 1121, 1216
BseGI GGATG 5 cut(s) 331, 386, 1005, 1255, 1318
BseJI GATNNNNATC 2 cut(s) 28, 1317
BseLI CCNNNNNNNGG 4 cut(s) 320, 448, 717, 830
BseMI GCAATG 1 cut(s) 417
BseMII CTCAG 3 cut(s) 251, 755, 860
BsePI GCGCGC 1 cut(s) 674
BseRI GAGGAG 1 cut(s) 460
BseXI GCAGC 2 cut(s) 243, 600
BseYI CCCAGC 1 cut(s) 678
Bsh1236I CGCG 1 cut(s) 676
BshFI GGCC 9 cut(s) 414, 452, 554, 569, 605, 610, 834, 948, 1209
BshNI GGYRCC 1 cut(s) 1040
BsiHKAI GWGCWC 2 cut(s) 282, 847
BsiHKCI CYCGRG 1 cut(s) 1121
BsiSI CCGG 6 cut(s) 449, 592, 612, 642, 884, 1122
BslFI GGGAC 2 cut(s) 695, 1199
BslI CCNNNNNNNGG 4 cut(s) 320, 448, 717, 830
BsmAI GTCTC 4 cut(s) 2, 209, 742, 1279
BsmBI CGTCTC 1 cut(s) 742
BsmFI GGGAC 2 cut(s) 695, 1199
BsmI GAATGC 1 cut(s) 1029
BsnI GGCC 9 cut(s) 414, 452, 554, 569, 605, 610, 834, 948, 1209
Bso31I GGTCTC 2 cut(s) 2, 209
BsoBI CYCGRG 1 cut(s) 1121
Bsp1286I GDGCHC 2 cut(s) 282, 847
BspANI GGCC 9 cut(s) 414, 452, 554, 569, 605, 610, 834, 948, 1209
BspCNI CTCAG 3 cut(s) 250, 754, 859
BspFNI CGCG 1 cut(s) 676
BspHI TCATGA 1 cut(s) 157
BspLI GGNNCC 4 cut(s) 568, 702, 1042, 1215
BspPI GGATC 4 cut(s) 1172, 1172, 1313, 1358
BspQI GCTCTTC 1 cut(s) 287
BspT107I GGYRCC 1 cut(s) 1040
BspTI CTTAAG 1 cut(s) 860
BspTNI GGTCTC 2 cut(s) 2, 209
BsrBI CCGCTC 1 cut(s) 500
BsrDI GCAATG 1 cut(s) 417
BssECI CCNNGG 4 cut(s) 549, 555, 1121, 1216
BssHII GCGCGC 1 cut(s) 674
BssNI GRCGYC 1 cut(s) 515
BssSI CACGAG 1 cut(s) 973
BssT1I CCWWGG 1 cut(s) 555
Bst2BI CACGAG 1 cut(s) 973
Bst2UI CCWGG 4 cut(s) 607, 945, 1211, 1218
Bst4CI ACNGT 2 cut(s) 712, 1150
Bst6I CTCTTC 3 cut(s) 287, 440, 478
BstACI GRCGYC 1 cut(s) 515
BstAFI CTTAAG 1 cut(s) 860
BstC8I GCNNGC 6 cut(s) 168, 257, 424, 676, 794, 1029
BstDEI CTNAG 5 cut(s) 237, 251, 741, 846, 1047
BstF5I GGATG 5 cut(s) 331, 386, 1005, 1255, 1318
BstFNI CGCG 1 cut(s) 676
BstH2I RGCGCY 1 cut(s) 237
BstHHI GCGC 5 cut(s) 236, 676, 678, 901, 1128
BstMAI GTCTC 4 cut(s) 2, 209, 742, 1279
BstMWI GCNNNNNNNGC 5 cut(s) 172, 398, 494, 503, 575
BstNI CCWGG 4 cut(s) 607, 945, 1211, 1218
BstNSI RCATGY 3 cut(s) 170, 259, 670
BstPAI GACNNNNGTC 1 cut(s) 644
BstSCI CCNGG 9 cut(s) 447, 591, 605, 610, 943, 1120, 1121, 1209, 1216
BstSFI CTRYAG 2 cut(s) 779, 1071
BstUI CGCG 1 cut(s) 676
BstV1I GCAGC 2 cut(s) 243, 600
BstX2I RGATCY 4 cut(s) 29, 1164, 1318, 1363
BstYI RGATCY 4 cut(s) 29, 1164, 1318, 1363
BsuI GTATCC 1 cut(s) 17
BsuRI GGCC 9 cut(s) 414, 452, 554, 569, 605, 610, 834, 948, 1209
BtgZI GCGATG 1 cut(s) 634
BtsCI GGATG 5 cut(s) 331, 386, 1005, 1255, 1318
BtsI GCAGTG 1 cut(s) 207
BtsIMutI CAGTG 1 cut(s) 207
Cac8I GCNNGC 6 cut(s) 168, 257, 424, 676, 794, 1029
CaiI CAGNNNCTG 1 cut(s) 1223
CciI TCATGA 1 cut(s) 157
CfoI GCGC 5 cut(s) 236, 676, 678, 901, 1128
Cfr13I GGNCC 5 cut(s) 567, 609, 639, 832, 1213
Cfr9I CCCGGG 1 cut(s) 1121
CpoI CGGWCCG 1 cut(s) 639
Csp6I GTAC 3 cut(s) 63, 181, 483
CspI CGGWCCG 1 cut(s) 639
CviQI GTAC 3 cut(s) 63, 181, 483
DdeI CTNAG 5 cut(s) 237, 251, 741, 846, 1047
DraI TTTAAA 1 cut(s) 1105
EaeI YGGCCR 1 cut(s) 450
Eam1104I CTCTTC 3 cut(s) 287, 440, 478
EarI CTCTTC 3 cut(s) 287, 440, 478
EciI GGCGGA 5 cut(s) 36, 324, 379, 388, 419
Ecl136II GAGCTC 2 cut(s) 280, 845
Eco130I CCWWGG 1 cut(s) 555
Eco147I AGGCCT 2 cut(s) 414, 554
Eco24I GRGCYC 2 cut(s) 282, 847
Eco31I GGTCTC 2 cut(s) 2, 209
Eco47I GGWCC 2 cut(s) 639, 1213
Eco47III AGCGCT 1 cut(s) 235
Eco53kI GAGCTC 2 cut(s) 280, 845
Eco57I CTGAAG 3 cut(s) 526, 846, 1245
Eco88I CYCGRG 1 cut(s) 1121
EcoICRI GAGCTC 2 cut(s) 280, 845
EcoO109I RGGNCCY 1 cut(s) 1213
EcoRII CCWGG 4 cut(s) 605, 943, 1209, 1216
EcoT14I CCWWGG 1 cut(s) 555
EcoT38I GRGCYC 2 cut(s) 282, 847
ErhI CCWWGG 1 cut(s) 555
Esp3I CGTCTC 1 cut(s) 742
FalI AAGNNNNNCTT 2 cut(s) 885, 917
FaqI GGGAC 2 cut(s) 695, 1199
FauI CCCGC 5 cut(s) 431, 502, 785, 867, 1189
Fnu4HI GCNGC 4 cut(s) 232, 498, 589, 1377
FokI GGATG 5 cut(s) 318, 373, 1012, 1262, 1325
FriOI GRGCYC 2 cut(s) 282, 847
Fsp4HI GCNGC 4 cut(s) 232, 498, 589, 1377
FspBI CTAG 1 cut(s) 696
GlaI GCGC 5 cut(s) 235, 675, 677, 900, 1127
GluI GCNGC 4 cut(s) 232, 498, 589, 1377
GsaI CCCAGC 1 cut(s) 682
GsuI CTGGAG 3 cut(s) 26, 290, 1290
HaeII RGCGCY 1 cut(s) 237
HaeIII GGCC 9 cut(s) 414, 452, 554, 569, 605, 610, 834, 948, 1209
HapII CCGG 6 cut(s) 449, 592, 612, 642, 884, 1122
HhaI GCGC 5 cut(s) 236, 676, 678, 901, 1128
Hin1I GRCGYC 1 cut(s) 515
Hin6I GCGC 5 cut(s) 234, 674, 676, 899, 1126
HinP1I GCGC 5 cut(s) 234, 674, 676, 899, 1126
HinfI GANTC 3 cut(s) 645, 768, 969
HpaII CCGG 6 cut(s) 449, 592, 612, 642, 884, 1122
HphI GGTGA 6 cut(s) 206, 372, 700, 1162, 1213, 1367
Hpy166II GTNNAC 3 cut(s) 138, 197, 562
Hpy188I TCNGA 6 cut(s) 536, 550, 705, 816, 842, 1080
Hpy188III TCNNGA 6 cut(s) 158, 269, 408, 973, 1276, 1307
Hpy8I GTNNAC 3 cut(s) 138, 197, 562
Hpy99I CGWCG 7 cut(s) 223, 226, 357, 360, 514, 517, 520
HpyAV CCTTC 5 cut(s) 120, 152, 758, 1089, 1220
HpyCH4III ACNGT 2 cut(s) 712, 1150
HpyCH4IV ACGT 1 cut(s) 515
HpyCH4V TGCA 2 cut(s) 259, 310
HpyF10VI GCNNNNNNNGC 5 cut(s) 172, 398, 494, 503, 575
HpyF3I CTNAG 5 cut(s) 237, 251, 741, 846, 1047
HpySE526I ACGT 1 cut(s) 515
Hsp92I GRCGYC 1 cut(s) 515
HspAI GCGC 5 cut(s) 234, 674, 676, 899, 1126
LguI GCTCTTC 1 cut(s) 287
LmnI GCTCC 2 cut(s) 551, 1309
Lsp1109I GCAGC 2 cut(s) 243, 600
LweI GCATC 6 cut(s) 527, 886, 1078, 1107, 1240, 1269
MaeI CTAG 1 cut(s) 696
MaeII ACGT 1 cut(s) 515
MaeIII GTNAC 3 cut(s) 378, 886, 961
MbiI CCGCTC 1 cut(s) 500
MfeI CAATTG 1 cut(s) 921
MflI RGATCY 4 cut(s) 29, 1164, 1318, 1363
MhlI GDGCHC 2 cut(s) 282, 847
MluCI AATT 5 cut(s) 105, 125, 264, 921, 1173
MlyI GAGTC 1 cut(s) 654
MmeI TCCRAC 1 cut(s) 1316
MseI TTAA 3 cut(s) 363, 861, 1104
MspA1I CMGCKG 1 cut(s) 1339
MspCI CTTAAG 1 cut(s) 860
MspI CCGG 6 cut(s) 449, 592, 612, 642, 884, 1122
MspR9I CCNGG 9 cut(s) 449, 593, 607, 612, 945, 1122, 1123, 1211, 1218
MunI CAATTG 1 cut(s) 921
Mva1269I GAATGC 1 cut(s) 1029
MvaI CCWGG 4 cut(s) 607, 945, 1211, 1218
MvnI CGCG 1 cut(s) 676
MwoI GCNNNNNNNGC 5 cut(s) 172, 398, 494, 503, 575
NciI CCSGG 5 cut(s) 449, 593, 612, 1122, 1123
NlaIV GGNNCC 4 cut(s) 568, 702, 1042, 1215
NmeAIII GCCGAG 1 cut(s) 595
NmuCI GTSAC 1 cut(s) 378
NspI RCATGY 3 cut(s) 170, 259, 670
PaeI GCATGC 2 cut(s) 170, 259
PagI TCATGA 1 cut(s) 157
PauI GCGCGC 1 cut(s) 674
PceI AGGCCT 2 cut(s) 414, 554
PciSI GCTCTTC 1 cut(s) 287
PcsI WCGNNNNNNNCGW 1 cut(s) 515
PctI GAATGC 1 cut(s) 1029
PfeI GAWTC 2 cut(s) 768, 969
PflFI GACNNNGTC 1 cut(s) 514
PkrI GCNGC 4 cut(s) 233, 499, 590, 1378
PleI GAGTC 1 cut(s) 653
PpsI GAGTC 1 cut(s) 653
PpuMI RGGWCCY 1 cut(s) 1213
PshAI GACNNNNGTC 1 cut(s) 644
Psp124BI GAGCTC 2 cut(s) 282, 847
Psp5II RGGWCCY 1 cut(s) 1213
Psp6I CCWGG 4 cut(s) 605, 943, 1209, 1216
PspFI CCCAGC 1 cut(s) 678
PspGI CCWGG 4 cut(s) 605, 943, 1209, 1216
PspN4I GGNNCC 4 cut(s) 568, 702, 1042, 1215
PspPI GGNCC 5 cut(s) 567, 609, 639, 832, 1213
PspPPI RGGWCCY 1 cut(s) 1213
PstNI CAGNNNCTG 1 cut(s) 1223
PsuI RGATCY 4 cut(s) 29, 1164, 1318, 1363
PsyI GACNNNGTC 1 cut(s) 514
PteI GCGCGC 1 cut(s) 674
RsaI GTAC 3 cut(s) 64, 182, 484
RsaNI GTAC 3 cut(s) 63, 181, 483
Rsr2I CGGWCCG 1 cut(s) 639
RsrII CGGWCCG 1 cut(s) 639
SacI GAGCTC 2 cut(s) 282, 847
SapI GCTCTTC 1 cut(s) 287
SaqAI TTAA 3 cut(s) 363, 861, 1104
SatI GCNGC 4 cut(s) 232, 498, 589, 1377
Sau96I GGNCC 5 cut(s) 567, 609, 639, 832, 1213
ScaI AGTACT 1 cut(s) 182
SchI GAGTC 1 cut(s) 654
ScrFI CCNGG 9 cut(s) 449, 593, 607, 612, 945, 1122, 1123, 1211, 1218
SduI GDGCHC 2 cut(s) 282, 847
SfaNI GCATC 6 cut(s) 527, 886, 1078, 1107, 1240, 1269
SfcI CTRYAG 2 cut(s) 779, 1071
SinI GGWCC 2 cut(s) 639, 1213
SmaI CCCGGG 1 cut(s) 1123
SmlI CTYRAG 1 cut(s) 860
SmoI CTYRAG 1 cut(s) 860
SphI GCATGC 2 cut(s) 170, 259
SrfI GCCCGGGC 1 cut(s) 1123
Sse9I AATT 5 cut(s) 105, 125, 264, 921, 1173
SseBI AGGCCT 2 cut(s) 414, 554
SspMI CTAG 1 cut(s) 696
SstI GAGCTC 2 cut(s) 282, 847
StuI AGGCCT 2 cut(s) 414, 554
StyD4I CCNGG 9 cut(s) 447, 591, 605, 610, 943, 1120, 1121, 1209, 1216
StyI CCWWGG 1 cut(s) 555
TaaI ACNGT 2 cut(s) 712, 1150
TaiI ACGT 1 cut(s) 518
TaqI TCGA 5 cut(s) 407, 600, 632, 723, 1277
TasI AATT 5 cut(s) 105, 125, 264, 921, 1173
TatI WGTACW 1 cut(s) 180
TauI GCSGC 2 cut(s) 500, 1379
TfiI GAWTC 2 cut(s) 768, 969
Tru1I TTAA 3 cut(s) 363, 861, 1104
Tru9I TTAA 3 cut(s) 363, 861, 1104
TscAI CASTG 1 cut(s) 214
TseFI GTSAC 1 cut(s) 378
TseI GCWGC 2 cut(s) 231, 588
Tsp45I GTSAC 1 cut(s) 378
TspDTI ATGAA 4 cut(s) 174, 232, 1016, 1329
TspGWI ACGGA 1 cut(s) 366
TspMI CCCGGG 1 cut(s) 1121
TspRI CASTG 1 cut(s) 214
Tth111I GACNNNGTC 1 cut(s) 514
Vha464I CTTAAG 1 cut(s) 860
VpaK11BI GGWCC 2 cut(s) 639, 1213
XapI RAATTY 1 cut(s) 125
XceI RCATGY 3 cut(s) 170, 259, 670
XmaI CCCGGG 1 cut(s) 1121
XspI CTAG 1 cut(s) 696
ZraI GACGTC 1 cut(s) 516
ZrmI AGTACT 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.