Prupe.1G105200_v2.0.a1

50S ribosomal protein L3-2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012310
Physical Location & Seq
Forward (+)
8469192 .. 8472510
3319 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G105200.1

Sequence Viewer

Length: 984 bp
ATGTCGGCCTTATCAAGAGGCCTCCTTTCTCGGCTTCGCCTTCTCTCCCTCAACCCCACCACCACCTCTTCTGCTGCTGCTGCTAATGCTAATGCTACGACGTCGTTTACGCAAACTCAGTACCATTTCTTCAGATGGTTCAACTCCGAGGCCTTGGTTGATGCGTCTGAGGTCGCCGAGGAGCGGAGCCGCGTCATCGAAGCCAAGCCTGGGGCGATGAGCCCAAGCTCAAAGAGGACTGGTCTCATAGCCGTCAAGTGTGGGATGACTGCGCGCTGGGACAAATGGGGTGCTAGGGTTCCCATCACTGTGCTTTGGGTCGATGATAATATCGTCTCTCAGGTCAAGACCCCCGAGAAAGAGGGCTTCCCTGCTCTACAGATTGGTTGCGGACAGAAGAAAGCAAAACATTTGACAAAGTCTGAGGTCGGTCATTTCAGAGCTCAAGGTGTTCCACTTAAGAGGAAACTGAGGGAGTTTCCTGTGACAAAGGATGCGCTTCTCCCTGTCGGTATGTCAATTGGTGTTCGCCATTTTGTTCCAGGCCAATATGTTGATGTCACAGGAATCACGAGAGGGAAAGGTTTCCAGGGCGGGATGAAACGGCATGGTTTTAAAGGAATGCCAGCATCTCATGGTGCATCTTTGTCACACCGAAGTATTGGTTCTACAGGTCAGAGGGATGCTCCTGGAAAGGTATTTAAAGGCAGGAAGATGGCTGGGCGCATGGGTGGGAAACAGAGGACGGTAAAAAATGTATGGGTCTACAAAATTGATCCTGCAAGGAATTTGATGTGGGTGAGAGGCCAAGTCCCAGGTGCTGAAGGGAACTTTGTGTTCATAAGAGATGCTTTCTACAAGAAACCTGATATTTCATTGCTACCATTTCCGACTTACTTTGCTCCGGAGGACGAGGATGCAACCAAGTTAGAAACACTGGTTGCTGATCTTGGAGAGGTAGATCCATTCATGGTGGCAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L3

Protein Analysis

328

Amino Acids

35.85

Weight (kDa)

10.05

Isoelectric Point (pI)

40.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012310)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17465
fragaria_vesca FvH4_4g21510
malus_domestica MD13G1139500.v1.1 MD16G1136200.v1.1
prunus_persica Prupe.1G105200_v2.0.a1
pyrus_communis pycom13g12130 pycom16g11980
rosa_chinensis RchiOBHm_Chr4g0427531
rosa_laevigata RLG00000007230
rosa_multiflora Rmu_sc0009627.1_g000003 Rmu_sc0020720.1_g000001
rosa_roxburghii Rroxscaffold_5G00369170
rosa_rugosa Rorug04G0218400 Rorug04G0218400
rosa_samantha Rh4AG274900 Rh4BG280700 Rh4CG296000 Rh4DG278100
rosa_wichuraiana Rw4G023830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 104
AccBSI CCGCTC 1 cut(s) 184
AccI GTMKAC 1 cut(s) 765
AccII CGCG 2 cut(s) 192, 274
AccIII TCCGGA 1 cut(s) 904
AciI CCGC 4 cut(s) 184, 190, 390, 594
AclWI GGATC 2 cut(s) 770, 956
AcsI RAATTY 1 cut(s) 787
AcuI CTGAAG 2 cut(s) 115, 843
AcyI GRCGYC 1 cut(s) 101
AfaI GTAC 1 cut(s) 122
AfiI CCNNNNNNNGG 2 cut(s) 183, 210
AflII CTTAAG 1 cut(s) 458
AgsI TTSAA 1 cut(s) 142
AjnI CCWGG 5 cut(s) 208, 541, 588, 688, 814
AluBI AGCT 2 cut(s) 228, 443
AluI AGCT 2 cut(s) 228, 443
Alw21I GWGCWC 1 cut(s) 445
Alw26I GTCTC 2 cut(s) 248, 340
AlwI GGATC 2 cut(s) 770, 956
AlwNI CAGNNNCTG 1 cut(s) 821
Ama87I CYCGRG 1 cut(s) 353
Aor13HI TCCGGA 1 cut(s) 904
AoxI GGCC 5 cut(s) 6, 19, 150, 544, 805
ApeKI GCWGC 3 cut(s) 74, 77, 80
ApoI RAATTY 1 cut(s) 787
Asp700I GAANNNNTTC 1 cut(s) 584
AspLEI GCGC 4 cut(s) 274, 276, 499, 726
AsuHPI GGTGA 1 cut(s) 811
AvaI CYCGRG 1 cut(s) 353
BanII GRGCYC 2 cut(s) 224, 445
BarI GAAGNNNNNNTAC 2 cut(s) 113, 145
BauI CACGAG 1 cut(s) 571
Bbv12I GWGCWC 1 cut(s) 445
BbvI GCAGC 3 cut(s) 61, 64, 67
BccI CCATC 3 cut(s) 129, 311, 709
BceAI ACGGC 2 cut(s) 236, 620
BciT130I CCWGG 5 cut(s) 210, 543, 590, 690, 816
BcoDI GTCTC 2 cut(s) 248, 340
BfaI CTAG 1 cut(s) 294
BfmI CTRYAG 2 cut(s) 377, 669
BfrI CTTAAG 1 cut(s) 458
BisI GCNGC 4 cut(s) 75, 78, 81, 190
BlsI GCNGC 4 cut(s) 76, 79, 82, 191
Bme1390I CCNGG 5 cut(s) 210, 543, 590, 690, 816
BmeT110I CYCGRG 1 cut(s) 353
BmiI GGNNCC 2 cut(s) 188, 300
BmrFI CCNGG 5 cut(s) 210, 543, 590, 690, 816
BmsI GCATC 7 cut(s) 151, 484, 638, 650, 673, 838, 907
BplI GAGNNNNNCTC 2 cut(s) 670, 702
BpuEI CTTGAG 1 cut(s) 429
BsaHI GRCGYC 1 cut(s) 101
BsaI GGTCTC 1 cut(s) 248
BsaJI CCNNGG 6 cut(s) 147, 153, 177, 209, 589, 814
BsaWI WCCGGW 1 cut(s) 904
Bsc4I CCNNNNNNNGG 2 cut(s) 183, 210
Bse1I ACTGG 2 cut(s) 244, 942
Bse3DI GCAATG 1 cut(s) 875
BseAI TCCGGA 1 cut(s) 904
BseBI CCWGG 5 cut(s) 210, 543, 590, 690, 816
BseDI CCNNGG 6 cut(s) 147, 153, 177, 209, 589, 814
BseGI GGATG 5 cut(s) 270, 499, 603, 688, 922
BseLI CCNNNNNNNGG 2 cut(s) 183, 210
BseMI GCAATG 1 cut(s) 875
BseMII CTCAG 5 cut(s) 131, 159, 353, 414, 461
BseNI ACTGG 2 cut(s) 244, 942
BsePI GCGCGC 1 cut(s) 272
BseRI GAGGAG 1 cut(s) 194
BseXI GCAGC 3 cut(s) 61, 64, 67
BseYI CCCAGC 2 cut(s) 276, 719
Bsh1236I CGCG 2 cut(s) 192, 274
BshFI GGCC 5 cut(s) 8, 21, 152, 546, 807
BsiHKAI GWGCWC 1 cut(s) 445
BsiHKCI CYCGRG 1 cut(s) 353
BsiSI CCGG 1 cut(s) 905
BslFI GGGAC 2 cut(s) 293, 797
BslI CCNNNNNNNGG 2 cut(s) 183, 210
BsmAI GTCTC 2 cut(s) 248, 340
BsmBI CGTCTC 1 cut(s) 340
BsmFI GGGAC 2 cut(s) 293, 797
BsmI GAATGC 1 cut(s) 627
BsnI GGCC 5 cut(s) 8, 21, 152, 546, 807
Bso31I GGTCTC 1 cut(s) 248
BsoBI CYCGRG 1 cut(s) 353
Bsp1286I GDGCHC 2 cut(s) 224, 445
Bsp13I TCCGGA 1 cut(s) 904
Bsp143I GATC 3 cut(s) 775, 946, 961
BspACI CCGC 4 cut(s) 184, 190, 390, 594
BspANI GGCC 5 cut(s) 8, 21, 152, 546, 807
BspCNI CTCAG 5 cut(s) 130, 160, 352, 415, 462
BspEI TCCGGA 1 cut(s) 904
BspFNI CGCG 2 cut(s) 192, 274
BspLI GGNNCC 2 cut(s) 188, 300
BspPI GGATC 2 cut(s) 770, 956
BspTI CTTAAG 1 cut(s) 458
BspTNI GGTCTC 1 cut(s) 248
BsrBI CCGCTC 1 cut(s) 184
BsrDI GCAATG 1 cut(s) 875
BsrI ACTGG 2 cut(s) 244, 942
BssECI CCNNGG 6 cut(s) 147, 153, 177, 209, 589, 814
BssHII GCGCGC 1 cut(s) 272
BssMI GATC 3 cut(s) 775, 946, 961
BssNI GRCGYC 1 cut(s) 101
BssSI CACGAG 1 cut(s) 571
BssT1I CCWWGG 1 cut(s) 153
Bst2BI CACGAG 1 cut(s) 571
Bst2UI CCWGG 5 cut(s) 210, 543, 590, 690, 816
Bst4CI ACNGT 2 cut(s) 310, 748
Bst6I CTCTTC 1 cut(s) 73
BstACI GRCGYC 1 cut(s) 101
BstAFI CTTAAG 1 cut(s) 458
BstC8I GCNNGC 2 cut(s) 274, 627
BstDEI CTNAG 5 cut(s) 117, 168, 339, 423, 470
BstF5I GGATG 5 cut(s) 270, 499, 603, 688, 922
BstFNI CGCG 2 cut(s) 192, 274
BstHHI GCGC 4 cut(s) 274, 276, 499, 726
BstKTI GATC 3 cut(s) 778, 949, 964
BstMAI GTCTC 2 cut(s) 248, 340
BstMBI GATC 3 cut(s) 775, 946, 961
BstMWI GCNNNNNNNGC 2 cut(s) 80, 86
BstNI CCWGG 5 cut(s) 210, 543, 590, 690, 816
BstSCI CCNGG 5 cut(s) 208, 541, 588, 688, 814
BstSFI CTRYAG 2 cut(s) 377, 669
BstUI CGCG 2 cut(s) 192, 274
BstV1I GCAGC 3 cut(s) 61, 64, 67
BstX2I RGATCY 1 cut(s) 961
BstYI RGATCY 1 cut(s) 961
BsuRI GGCC 5 cut(s) 8, 21, 152, 546, 807
BtgZI GCGATG 1 cut(s) 230
BtsCI GGATG 5 cut(s) 270, 499, 603, 688, 922
BtsIMutI CAGTG 2 cut(s) 306, 935
Cac8I GCNNGC 2 cut(s) 274, 627
CaiI CAGNNNCTG 1 cut(s) 821
CfoI GCGC 4 cut(s) 274, 276, 499, 726
CseI GACGC 2 cut(s) 153, 181
Csp6I GTAC 1 cut(s) 121
CviAII CATG 4 cut(s) 608, 635, 727, 970
CviQI GTAC 1 cut(s) 121
DdeI CTNAG 5 cut(s) 117, 168, 339, 423, 470
DpnI GATC 3 cut(s) 777, 948, 963
DpnII GATC 3 cut(s) 775, 946, 961
DraI TTTAAA 2 cut(s) 616, 703
Eam1104I CTCTTC 1 cut(s) 73
EarI CTCTTC 1 cut(s) 73
Ecl136II GAGCTC 1 cut(s) 443
Eco130I CCWWGG 1 cut(s) 153
Eco147I AGGCCT 2 cut(s) 21, 152
Eco24I GRGCYC 2 cut(s) 224, 445
Eco31I GGTCTC 1 cut(s) 248
Eco53kI GAGCTC 1 cut(s) 443
Eco57I CTGAAG 2 cut(s) 115, 843
Eco88I CYCGRG 1 cut(s) 353
EcoICRI GAGCTC 1 cut(s) 443
EcoRII CCWGG 5 cut(s) 208, 541, 588, 688, 814
EcoT14I CCWWGG 1 cut(s) 153
EcoT38I GRGCYC 2 cut(s) 224, 445
ErhI CCWWGG 1 cut(s) 153
Esp3I CGTCTC 1 cut(s) 340
FaeI CATG 4 cut(s) 611, 638, 730, 973
FaiI YATR 9 cut(s) 248, 515, 552, 609, 636, 728, 760, 842, 971
FalI AAGNNNNNCTT 2 cut(s) 835, 867
FaqI GGGAC 2 cut(s) 293, 797
FatI CATG 4 cut(s) 607, 634, 726, 969
FauI CCCGC 1 cut(s) 587
FblI GTMKAC 1 cut(s) 765
Fnu4HI GCNGC 4 cut(s) 75, 78, 81, 190
FokI GGATG 5 cut(s) 277, 506, 610, 695, 929
FriOI GRGCYC 2 cut(s) 224, 445
Fsp4HI GCNGC 4 cut(s) 75, 78, 81, 190
FspBI CTAG 1 cut(s) 294
GlaI GCGC 4 cut(s) 273, 275, 498, 725
GluI GCNGC 4 cut(s) 75, 78, 81, 190
GsaI CCCAGC 2 cut(s) 280, 723
HaeIII GGCC 5 cut(s) 8, 21, 152, 546, 807
HapII CCGG 1 cut(s) 905
HgaI GACGC 2 cut(s) 153, 181
HhaI GCGC 4 cut(s) 274, 276, 499, 726
Hin1I GRCGYC 1 cut(s) 101
Hin1II CATG 4 cut(s) 611, 638, 730, 973
Hin6I GCGC 4 cut(s) 272, 274, 497, 724
HinP1I GCGC 4 cut(s) 272, 274, 497, 724
HinfI GANTC 1 cut(s) 567
HpaII CCGG 1 cut(s) 905
HphI GGTGA 1 cut(s) 811
Hpy166II GTNNAC 2 cut(s) 108, 766
Hpy188I TCNGA 7 cut(s) 134, 148, 169, 424, 440, 678, 891
Hpy188III TCNNGA 4 cut(s) 15, 346, 571, 905
Hpy8I GTNNAC 2 cut(s) 108, 766
Hpy99I CGWCG 2 cut(s) 103, 106
HpyAV CCTTC 2 cut(s) 50, 818
HpyCH4III ACNGT 2 cut(s) 310, 748
HpyCH4IV ACGT 1 cut(s) 101
HpyCH4V TGCA 3 cut(s) 641, 782, 920
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 86
HpyF3I CTNAG 5 cut(s) 117, 168, 339, 423, 470
HpySE526I ACGT 1 cut(s) 101
Hsp92I GRCGYC 1 cut(s) 101
Hsp92II CATG 4 cut(s) 611, 638, 730, 973
HspAI GCGC 4 cut(s) 272, 274, 497, 724
Kpn2I TCCGGA 1 cut(s) 904
Kzo9I GATC 3 cut(s) 775, 946, 961
LmnI GCTCC 4 cut(s) 181, 186, 691, 907
Lsp1109I GCAGC 3 cut(s) 61, 64, 67
LweI GCATC 7 cut(s) 151, 484, 638, 650, 673, 838, 907
MaeI CTAG 1 cut(s) 294
MaeII ACGT 1 cut(s) 101
MaeIII GTNAC 3 cut(s) 484, 559, 648
MalI GATC 3 cut(s) 777, 948, 963
MbiI CCGCTC 1 cut(s) 184
MboI GATC 3 cut(s) 775, 946, 961
MboII GAAGA 4 cut(s) 60, 121, 409, 724
MfeI CAATTG 1 cut(s) 519
MflI RGATCY 1 cut(s) 961
MhlI GDGCHC 2 cut(s) 224, 445
MluCI AATT 3 cut(s) 519, 771, 787
MmeI TCCRAC 1 cut(s) 914
MroI TCCGGA 1 cut(s) 904
MroXI GAANNNNTTC 1 cut(s) 584
MseI TTAA 4 cut(s) 459, 615, 702, 982
MslI CAYNNNNRTG 1 cut(s) 308
MspCI CTTAAG 1 cut(s) 458
MspI CCGG 1 cut(s) 905
MspR9I CCNGG 5 cut(s) 210, 543, 590, 690, 816
MunI CAATTG 1 cut(s) 519
Mva1269I GAATGC 1 cut(s) 627
MvaI CCWGG 5 cut(s) 210, 543, 590, 690, 816
MvnI CGCG 2 cut(s) 192, 274
MwoI GCNNNNNNNGC 2 cut(s) 80, 86
NdeII GATC 3 cut(s) 775, 946, 961
NlaIII CATG 4 cut(s) 611, 638, 730, 973
NlaIV GGNNCC 2 cut(s) 188, 300
NmeAIII GCCGAG 2 cut(s) 10, 202
NmuCI GTSAC 3 cut(s) 484, 559, 648
PauI GCGCGC 1 cut(s) 272
PceI AGGCCT 2 cut(s) 21, 152
PctI GAATGC 1 cut(s) 627
PdmI GAANNNNTTC 1 cut(s) 584
PfeI GAWTC 1 cut(s) 567
PflFI GACNNNGTC 1 cut(s) 418
PfoI TCCNGGA 1 cut(s) 688
PkrI GCNGC 4 cut(s) 76, 79, 82, 191
Psp124BI GAGCTC 1 cut(s) 445
Psp6I CCWGG 5 cut(s) 208, 541, 588, 688, 814
PspFI CCCAGC 2 cut(s) 276, 719
PspGI CCWGG 5 cut(s) 208, 541, 588, 688, 814
PspN4I GGNNCC 2 cut(s) 188, 300
PstNI CAGNNNCTG 1 cut(s) 821
PsuI RGATCY 1 cut(s) 961
PsyI GACNNNGTC 1 cut(s) 418
PteI GCGCGC 1 cut(s) 272
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
RseI CAYNNNNRTG 1 cut(s) 308
SacI GAGCTC 1 cut(s) 445
SaqAI TTAA 4 cut(s) 459, 615, 702, 982
SatI GCNGC 4 cut(s) 75, 78, 81, 190
Sau3AI GATC 3 cut(s) 775, 946, 961
ScrFI CCNGG 5 cut(s) 210, 543, 590, 690, 816
SduI GDGCHC 2 cut(s) 224, 445
SfaNI GCATC 7 cut(s) 151, 484, 638, 650, 673, 838, 907
SfcI CTRYAG 2 cut(s) 377, 669
SmiMI CAYNNNNRTG 1 cut(s) 308
SmlI CTYRAG 2 cut(s) 444, 458
SmoI CTYRAG 2 cut(s) 444, 458
Sse9I AATT 3 cut(s) 519, 771, 787
SseBI AGGCCT 2 cut(s) 21, 152
SsiI CCGC 4 cut(s) 184, 190, 390, 594
SspMI CTAG 1 cut(s) 294
SstI GAGCTC 1 cut(s) 445
StuI AGGCCT 2 cut(s) 21, 152
StyD4I CCNGG 5 cut(s) 208, 541, 588, 688, 814
StyI CCWWGG 1 cut(s) 153
TaaI ACNGT 2 cut(s) 310, 748
TaiI ACGT 1 cut(s) 104
TaqI TCGA 2 cut(s) 198, 321
TaqII GACCGA 1 cut(s) 419
TasI AATT 3 cut(s) 519, 771, 787
TauI GCSGC 1 cut(s) 192
TfiI GAWTC 1 cut(s) 567
Tru1I TTAA 4 cut(s) 459, 615, 702, 982
Tru9I TTAA 4 cut(s) 459, 615, 702, 982
TscAI CASTG 2 cut(s) 313, 942
TseFI GTSAC 3 cut(s) 484, 559, 648
TseI GCWGC 3 cut(s) 74, 77, 80
Tsp45I GTSAC 3 cut(s) 484, 559, 648
TspDTI ATGAA 4 cut(s) 614, 829, 864, 958
TspRI CASTG 2 cut(s) 313, 942
Tth111I GACNNNGTC 1 cut(s) 418
Vha464I CTTAAG 1 cut(s) 458
XapI RAATTY 1 cut(s) 787
XmiI GTMKAC 1 cut(s) 765
XmnI GAANNNNTTC 1 cut(s) 584
XspI CTAG 1 cut(s) 294
ZraI GACGTC 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.