Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015046

Physical Location & Seq

Genomic Coordinates Reverse (-)

6160733 .. 6163453

Gene Structure 2721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G18010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGTGGACGATGGGTTACAACGAAGGAGGCGCAGATTCCTTCAACGGAGGAAGAAAGCTTCGTCCTCTCATCCCACGTCTCACTTCTTGCCCCACCGCCGCCGTAAACACCAACTCCGACCACCGCTTTAATATGGCAGTGGTGACGATGACGGCGGAGCAGAACAAGAGGGAGCTGATGATGCTAAACTCAGAACCTCAACATCCACCGGTAATGGTGAGCTCACGGTGGAATCCGACACCAGATCAGTTAAGGGTTCTTGAAGAGCTTTACCGACAAGGAACTAGAACTCCTTCTGCCGACCACATCCAACAAATCACCGCACAGCTACGACGGTACGGGAAGATAGAAGGCAAAAACGTTTTCTATTGGTTCCAAAACCACAAAGCCCGAGAACGCCAGAAACGACGGCGACAAATGGAAACTGGCCACGAAGAAACGGTCCTTTCAACAGCAAGTCTTGTCTCAAACCACGGATTCGACAAGAAAGATCCTCCAGGTTACAAGGTTGAACAGGTCAAGAACTGGATATGTTCGGTCGGATGCGACACGCAACCAGAGAAACCTTCCCGTGATTATCATCTGGAGGAGCCAGCGAATATACGGGTGGAGCACAATGCTCGTTGTGGAGGAGACGAGAGACGAAGCTTTTTAGGGATAAACACCACGTGGCAGATGATGCAGTTGCCACCTAGTTTCTACTCTTCTTCACATCATCATCATCAACGTAACCTCATTCTCAATTCACCTACTGTTTCCTCCAACATGTCCAACAGCAACAATGCTGTCTCTGCTTCTAAAGATACGGTCACGGTTTCACCTGTATTTCTACGTACGAGAGAAGCAACGAACACAGAGACTTGTCATCGAAATGGTGATGATAATAAAGATCAAGAACAACATGAAGATTGCTCCAACGGTGAATTGGATCATCAAGAACAGACACTTGAGCTGTTTCCACTGAGAAAAGAAGGGTTTTGTAGCGATGGTGAGAAAGACAAGAACATTAGTGGCATTCACTGTTTCTATGAGTTTCTGCCATTGAAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0009653 GO:0009790 GO:0009791 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048314 GO:0048353 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048441 GO:0048444 GO:0048445 GO:0048446 GO:0048465 GO:0048467 GO:0048481 GO:0048482 GO:0048598 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051252 GO:0051301 GO:0051510 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

350

Amino Acids

40.14

Weight (kDa)

6.97

Isoelectric Point (pI)

55.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	75 - 134	3.5e-15	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015046)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18010
fragaria_vesca	FvH4_5g17270
malus_domestica	MD06G1231300.v1.1 MD14G1235800.v1.1
prunus_persica	Prupe.5G232600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0178511
rosa_laevigata	RLG00000005441
rosa_multiflora	Rmu_sc0002421.1_g000001 Rmu_sc0016060.1_g000002
rosa_roxburghii	Rroxscaffold_3G00274850
rosa_rugosa	Rorug06G0417700
rosa_samantha	Rh7AG016200 Rh7BG015700 Rh7CG016400 Rh7DG016300
rosa_wichuraiana	Rw7G001280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	96, 99, 124, 155, 321
AclI	AACGTT	1 cut(s)	360
AclWI	GGATC	2 cut(s)	485, 936
AcoI	YGGCCR	1 cut(s)	427
AcvI	CACGTG	1 cut(s)	669
AdeI	CACNNNGTG	1 cut(s)	669
AfaI	GTAC	2 cut(s)	338, 835
AflIII	ACRYGT	1 cut(s)	765
AgeI	ACCGGT	1 cut(s)	208
AgsI	TTSAA	5 cut(s)	43, 263, 450, 512, 1045
AjiI	CACGTC	1 cut(s)	77
AjnI	CCWGG	1 cut(s)	496
AloI	GAACNNNNNNTCC	2 cut(s)	274, 306
AluBI	AGCT	7 cut(s)	58, 175, 222, 268, 328, 648, 952
AluI	AGCT	7 cut(s)	58, 175, 222, 268, 328, 648, 952
Alw21I	GWGCWC	2 cut(s)	224, 615
Alw26I	GTCTC	6 cut(s)	83, 469, 627, 634, 793, 851
AlwI	GGATC	2 cut(s)	485, 936
Ama87I	CYCGRG	1 cut(s)	390
AoxI	GGCC	1 cut(s)	427
ArsI	GACNNNNNNTTYG	2 cut(s)	426, 458
AsiGI	ACCGGT	1 cut(s)	208
Asp700I	GAANNNNTTC	1 cut(s)	292
AspLEI	GCGC	1 cut(s)	32
AspS9I	GGNCC	1 cut(s)	442
AsuHPI	GGTGA	8 cut(s)	154, 229, 310, 738, 810, 887, 932, 1001
AvaI	CYCGRG	1 cut(s)	390
AvaII	GGWCC	1 cut(s)	442
BalI	TGGCCA	1 cut(s)	429
BanII	GRGCYC	1 cut(s)	224
BbrPI	CACGTG	1 cut(s)	669
Bbv12I	GWGCWC	2 cut(s)	224, 615
BccI	CCATC	2 cut(s)	4, 980
BceAI	ACGGC	3 cut(s)	86, 168, 425
BcgI	CGANNNNNNTGC	2 cut(s)	602, 636
BciT130I	CCWGG	1 cut(s)	498
BcoDI	GTCTC	6 cut(s)	83, 469, 627, 634, 793, 851
BfaI	CTAG	2 cut(s)	285, 693
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
Bme1390I	CCNGG	1 cut(s)	498
Bme18I	GGWCC	1 cut(s)	442
BmeT110I	CYCGRG	1 cut(s)	390
BmgBI	CACGTC	1 cut(s)	77
BmgT120I	GGNCC	1 cut(s)	442
BmiI	GGNNCC	2 cut(s)	374, 591
BmrFI	CCNGG	1 cut(s)	498
BmsI	GCATC	3 cut(s)	171, 533, 669
BpmI	CTGGAG	2 cut(s)	480, 605
BpuEI	CTTGAG	1 cut(s)	968
BsaAI	YACGTR	2 cut(s)	669, 833
BsaBI	GATNNNNATC	1 cut(s)	579
BsaJI	CCNNGG	1 cut(s)	472
BsaWI	WCCGGW	1 cut(s)	208
BsaXI	ACNNNNNCTCC	4 cut(s)	98, 128, 274, 304
Bse118I	RCCGGY	1 cut(s)	208
Bse1I	ACTGG	2 cut(s)	430, 530
Bse8I	GATNNNNATC	1 cut(s)	579
BseBI	CCWGG	1 cut(s)	498
BseDI	CCNNGG	1 cut(s)	472
BseGI	GGATG	4 cut(s)	69, 202, 306, 548
BseJI	GATNNNNATC	1 cut(s)	579
BseMII	CTCAG	2 cut(s)	204, 953
BseNI	ACTGG	2 cut(s)	430, 530
BseRI	GAGGAG	2 cut(s)	602, 645
Bsh1285I	CGRYCG	1 cut(s)	540
BshFI	GGCC	1 cut(s)	429
BshTI	ACCGGT	1 cut(s)	208
BsiEI	CGRYCG	1 cut(s)	540
BsiHKAI	GWGCWC	2 cut(s)	224, 615
BsiHKCI	CYCGRG	1 cut(s)	390
BsiSI	CCGG	1 cut(s)	209
BsiWI	CGTACG	1 cut(s)	833
BsmAI	GTCTC	6 cut(s)	83, 469, 627, 634, 793, 851
BsmBI	CGTCTC	3 cut(s)	83, 627, 634
BsmI	GAATGC	1 cut(s)	1014
BsnI	GGCC	1 cut(s)	429
BsoBI	CYCGRG	1 cut(s)	390
Bsp1286I	GDGCHC	2 cut(s)	224, 615
Bsp143I	GATC	4 cut(s)	244, 490, 889, 928
BspACI	CCGC	5 cut(s)	96, 99, 124, 155, 321
BspANI	GGCC	1 cut(s)	429
BspCNI	CTCAG	2 cut(s)	203, 954
BspLI	GGNNCC	2 cut(s)	374, 591
BspPI	GGATC	2 cut(s)	485, 936
BspQI	GCTCTTC	1 cut(s)	258
BsrFI	RCCGGY	1 cut(s)	208
BsrI	ACTGG	2 cut(s)	430, 530
BssAI	RCCGGY	1 cut(s)	208
BssECI	CCNNGG	1 cut(s)	472
BssMI	GATC	4 cut(s)	244, 490, 889, 928
Bst2UI	CCWGG	1 cut(s)	498
Bst4CI	ACNGT	8 cut(s)	228, 336, 442, 754, 808, 814, 920, 1022
Bst6I	CTCTTC	2 cut(s)	258, 709
BstAPI	GCANNNNNTGC	1 cut(s)	679
BstBAI	YACGTR	2 cut(s)	669, 833
BstC8I	GCNNGC	1 cut(s)	594
BstDEI	CTNAG	2 cut(s)	190, 962
BstDSI	CCRYGG	1 cut(s)	472
BstF5I	GGATG	4 cut(s)	69, 202, 306, 548
BstHHI	GCGC	1 cut(s)	32
BstKTI	GATC	4 cut(s)	247, 493, 892, 931
BstMAI	GTCTC	6 cut(s)	83, 469, 627, 634, 793, 851
BstMBI	GATC	4 cut(s)	244, 490, 889, 928
BstMCI	CGRYCG	1 cut(s)	540
BstMWI	GCNNNNNNNGC	3 cut(s)	181, 679, 791
BstNI	CCWGG	1 cut(s)	498
BstNSI	RCATGY	1 cut(s)	769
BstSCI	CCNGG	1 cut(s)	496
BstSNI	TACGTA	1 cut(s)	833
BstX2I	RGATCY	1 cut(s)	490
BstYI	RGATCY	1 cut(s)	490
BsuRI	GGCC	1 cut(s)	429
BtgI	CCRYGG	1 cut(s)	472
BtgZI	GCGATG	1 cut(s)	999
BtrI	CACGTC	1 cut(s)	77
BtsCI	GGATG	4 cut(s)	69, 202, 306, 548
BtsI	GCAGTG	1 cut(s)	144
BtsIMutI	CAGTG	3 cut(s)	144, 959, 1018
Cac8I	GCNNGC	1 cut(s)	594
CfoI	GCGC	1 cut(s)	32
Cfr10I	RCCGGY	1 cut(s)	208
Cfr13I	GGNCC	1 cut(s)	442
Csp6I	GTAC	2 cut(s)	337, 834
CspAI	ACCGGT	1 cut(s)	208
CviAII	CATG	2 cut(s)	766, 902
CviQI	GTAC	2 cut(s)	337, 834
DdeI	CTNAG	2 cut(s)	190, 962
DpnI	GATC	4 cut(s)	246, 492, 891, 930
DpnII	GATC	4 cut(s)	244, 490, 889, 928
DraIII	CACNNNGTG	1 cut(s)	669
EaeI	YGGCCR	1 cut(s)	427
Eam1104I	CTCTTC	2 cut(s)	258, 709
EarI	CTCTTC	2 cut(s)	258, 709
EciI	GGCGGA	1 cut(s)	170
Ecl136II	GAGCTC	1 cut(s)	222
Eco105I	TACGTA	1 cut(s)	833
Eco24I	GRGCYC	1 cut(s)	224
Eco47I	GGWCC	1 cut(s)	442
Eco53kI	GAGCTC	1 cut(s)	222
Eco72I	CACGTG	1 cut(s)	669
Eco88I	CYCGRG	1 cut(s)	390
EcoICRI	GAGCTC	1 cut(s)	222
EcoRII	CCWGG	1 cut(s)	496
EcoT38I	GRGCYC	1 cut(s)	224
Esp3I	CGTCTC	3 cut(s)	83, 627, 634
FaeI	CATG	2 cut(s)	769, 905
FaiI	YATR	6 cut(s)	134, 532, 602, 767, 903, 1029
FatI	CATG	2 cut(s)	765, 901
Fnu4HI	GCNGC	1 cut(s)	99
FokI	GGATG	4 cut(s)	56, 189, 293, 555
FriOI	GRGCYC	1 cut(s)	224
Fsp4HI	GCNGC	1 cut(s)	99
FspBI	CTAG	2 cut(s)	285, 693
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	1 cut(s)	99
GsuI	CTGGAG	2 cut(s)	480, 605
HaeIII	GGCC	1 cut(s)	429
HapII	CCGG	1 cut(s)	209
HhaI	GCGC	1 cut(s)	32
Hin1II	CATG	2 cut(s)	769, 905
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HindIII	AAGCTT	2 cut(s)	56, 646
HinfI	GANTC	3 cut(s)	35, 232, 477
HpaII	CCGG	1 cut(s)	209
HphI	GGTGA	8 cut(s)	154, 229, 310, 738, 810, 887, 932, 1001
Hpy166II	GTNNAC	2 cut(s)	6, 106
Hpy188I	TCNGA	4 cut(s)	118, 193, 237, 542
Hpy188III	TCNNGA	5 cut(s)	260, 520, 584, 893, 935
Hpy8I	GTNNAC	2 cut(s)	6, 106
Hpy99I	CGWCG	2 cut(s)	336, 411
HpyAV	CCTTC	6 cut(s)	17, 49, 303, 344, 576, 965
HpyCH4III	ACNGT	8 cut(s)	228, 336, 442, 754, 808, 814, 920, 1022
HpyCH4IV	ACGT	5 cut(s)	76, 360, 668, 727, 832
HpyCH4V	TGCA	1 cut(s)	682
HpyF10VI	GCNNNNNNNGC	3 cut(s)	181, 679, 791
HpyF3I	CTNAG	2 cut(s)	190, 962
HpySE526I	ACGT	5 cut(s)	76, 360, 668, 727, 832
Hsp92II	CATG	2 cut(s)	769, 905
HspAI	GCGC	1 cut(s)	30
Kzo9I	GATC	4 cut(s)	244, 490, 889, 928
LguI	GCTCTTC	1 cut(s)	258
LmnI	GCTCC	5 cut(s)	157, 172, 589, 610, 917
LweI	GCATC	3 cut(s)	171, 533, 669
MaeI	CTAG	2 cut(s)	285, 693
MaeII	ACGT	5 cut(s)	76, 360, 668, 727, 832
MaeIII	GTNAC	5 cut(s)	14, 142, 500, 728, 808
MalI	GATC	4 cut(s)	246, 492, 891, 930
MboI	GATC	4 cut(s)	244, 490, 889, 928
MboII	GAAGA	7 cut(s)	63, 275, 355, 446, 696, 699, 917
MflI	RGATCY	1 cut(s)	490
MhlI	GDGCHC	2 cut(s)	224, 615
MlsI	TGGCCA	1 cut(s)	429
MluCI	AATT	2 cut(s)	742, 923
MluNI	TGGCCA	1 cut(s)	429
MmeI	TCCRAC	7 cut(s)	141, 260, 334, 520, 786, 795, 939
Mox20I	TGGCCA	1 cut(s)	429
MroXI	GAANNNNTTC	1 cut(s)	292
MscI	TGGCCA	1 cut(s)	429
MseI	TTAA	2 cut(s)	129, 251
MslI	CAYNNNNRTG	1 cut(s)	870
Msp20I	TGGCCA	1 cut(s)	429
MspI	CCGG	1 cut(s)	209
MspR9I	CCNGG	1 cut(s)	498
Mva1269I	GAATGC	1 cut(s)	1014
MvaI	CCWGG	1 cut(s)	498
MwoI	GCNNNNNNNGC	3 cut(s)	181, 679, 791
NdeII	GATC	4 cut(s)	244, 490, 889, 928
NlaIII	CATG	2 cut(s)	769, 905
NlaIV	GGNNCC	2 cut(s)	374, 591
NmuCI	GTSAC	2 cut(s)	142, 808
NspI	RCATGY	1 cut(s)	769
PciI	ACATGT	1 cut(s)	765
PciSI	GCTCTTC	1 cut(s)	258
PcsI	WCGNNNNNNNCGW	1 cut(s)	403
PctI	GAATGC	1 cut(s)	1014
PdmI	GAANNNNTTC	1 cut(s)	292
PfeI	GAWTC	3 cut(s)	35, 232, 477
Pfl23II	CGTACG	1 cut(s)	833
PinAI	ACCGGT	1 cut(s)	208
PkrI	GCNGC	1 cut(s)	100
PmaCI	CACGTG	1 cut(s)	669
PmlI	CACGTG	1 cut(s)	669
Ppu21I	YACGTR	2 cut(s)	669, 833
PscI	ACATGT	1 cut(s)	765
Psp124BI	GAGCTC	1 cut(s)	224
Psp1406I	AACGTT	1 cut(s)	360
Psp6I	CCWGG	1 cut(s)	496
PspCI	CACGTG	1 cut(s)	669
PspGI	CCWGG	1 cut(s)	496
PspLI	CGTACG	1 cut(s)	833
PspN4I	GGNNCC	2 cut(s)	374, 591
PspPI	GGNCC	1 cut(s)	442
PsuI	RGATCY	1 cut(s)	490
RsaI	GTAC	2 cut(s)	338, 835
RsaNI	GTAC	2 cut(s)	337, 834
RseI	CAYNNNNRTG	1 cut(s)	870
SacI	GAGCTC	1 cut(s)	224
SapI	GCTCTTC	1 cut(s)	258
SaqAI	TTAA	2 cut(s)	129, 251
SatI	GCNGC	1 cut(s)	99
Sau3AI	GATC	4 cut(s)	244, 490, 889, 928
Sau96I	GGNCC	1 cut(s)	442
ScrFI	CCNGG	1 cut(s)	498
SduI	GDGCHC	2 cut(s)	224, 615
SfaNI	GCATC	3 cut(s)	171, 533, 669
SinI	GGWCC	1 cut(s)	442
SmiMI	CAYNNNNRTG	1 cut(s)	870
SmlI	CTYRAG	1 cut(s)	947
SmoI	CTYRAG	1 cut(s)	947
SnaBI	TACGTA	1 cut(s)	833
Sse9I	AATT	2 cut(s)	742, 923
SsiI	CCGC	5 cut(s)	96, 99, 124, 155, 321
SspMI	CTAG	2 cut(s)	285, 693
SstI	GAGCTC	1 cut(s)	224
StyD4I	CCNGG	1 cut(s)	496
TaaI	ACNGT	8 cut(s)	228, 336, 442, 754, 808, 814, 920, 1022
TaiI	ACGT	5 cut(s)	79, 363, 671, 730, 835
TaqI	TCGA	2 cut(s)	480, 868
TaqII	GACCGA	1 cut(s)	526
TasI	AATT	2 cut(s)	742, 923
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	3 cut(s)	35, 232, 477
Tru1I	TTAA	2 cut(s)	129, 251
Tru9I	TTAA	2 cut(s)	129, 251
TscAI	CASTG	3 cut(s)	144, 966, 1025
TseFI	GTSAC	2 cut(s)	142, 808
Tsp45I	GTSAC	2 cut(s)	142, 808
TspDTI	ATGAA	1 cut(s)	918
TspGWI	ACGGA	2 cut(s)	60, 489
TspRI	CASTG	3 cut(s)	144, 966, 1025
VpaK11BI	GGWCC	1 cut(s)	442
XceI	RCATGY	1 cut(s)	769
XcmI	CCANNNNNNNNNTGG	1 cut(s)	922
XmnI	GAANNNNTTC	1 cut(s)	292
XspI	CTAG	2 cut(s)	285, 693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.