RchiOBHm_Chr7g0178511

WUSCHEL-related homeobox

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0015046
Physical Location & Seq
Reverse (-)
1164626 .. 1167718
3093 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ15908

Sequence Viewer

Length: 1161 bp
ATGTGGATGATGGGTTACAACGATGGTGGTGACTTCAACATGATTCCGGATTCAGCCTTCAACGGTCGGAAGCTTCGGCCTCTCGTTCCTAGGCCTCTGTCATCTCCTCATAACAACAACAACAACAACACTTCAACAAGTACACATGCTCCACCTTGTTTCAGTCGAATTCATGCTGCGTCTGATTTCTTAGCACAATATCACCAGCTGGGTGAACAAAGAGGGATGAGAGAGTTCAATACGGTGCCGCAGGTTGTGGTGAGCTCGAGATGGAACCCCACGCCGGAACAGTTGAGGGCACTAGAGGAGTTATATCGACGAGGGACTCGAACCCCATCGGCTGAGCAGATTCAGCAAATCACTGCTCAGCTTAGAAGGTATGGAAAGATAGAGGGCAAGAACGTGTTCTATTGGTTCCAAAACCACAAGGCAAGAGAGAGACAGAAACGCCGTCGCCAGATGGAATCTCACGACGACCTTCAACTCATGTGTTCAGATCACCAAAAGAAGGAATCATTAGGCGGGGCAAGTAGGACAGTGTATGAAGTTGAAGAGACCAAGAATTGGGCACCCTCTGCAAACTGCATGACTACTAGTCTCCAAGATCAGCTTCATCATCAACAGGAAACAGTAAAAGCAGGAGCAGAGAGCAGGACGGAAGCATGGGTCCAATTCGGTGAGGAAGAATTGCAGCAACTTCAACAAGAGCAAAGAAGGAATTCCATGACTGTAGAAAAGAATGCCAGGTGGCAGATGATGCAGTTGTCTTGTCCTCCTCCTCCTCGTCTTCATGACCTCACCCACCTCATAAACGCCCCCACTTGTACCAGAACGACAGTAAGAACAATGGAGATGGACCAAAAGCAGCTCATTAATAACCGTAATAATAAGACTAGTCCTCCTCATGATCTCAGCATCTTTATAGCTCCCTACAGGTCTGGCGCTGCCCTTAACGGTCGCCATCTCCAACAAAACCAACACCGTAACGAAGAAGAAGATATTTCACGTGGAGATCAGTCTCAAACCCTCCAGCTATTTCCGCTTCGGAGTAGTACTTGCGGCGAAAAAGATCATCTTACAACCGAGAAATCCTTGCTAAACCCTAGTTTCGGCACTGGCCCTAATTACCAGTTTTTTGAGTTCCTCCCATTGAAGAACTGA

Protein Analysis

386

Amino Acids

44.66

Weight (kDa)

8.85

Isoelectric Point (pI)

63.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 89 - 148 1.8e-15 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015046)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18010
fragaria_vesca FvH4_5g17270
malus_domestica MD06G1231300.v1.1 MD14G1235800.v1.1
prunus_persica Prupe.5G232600_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0178511
rosa_laevigata RLG00000005441
rosa_multiflora Rmu_sc0002421.1_g000001 Rmu_sc0016060.1_g000002
rosa_roxburghii Rroxscaffold_3G00274850
rosa_rugosa Rorug06G0417700
rosa_samantha Rh7AG016200 Rh7BG015700 Rh7CG016400 Rh7DG016300
rosa_wichuraiana Rw7G001280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 241
AccB1I GGYRCC 2 cut(s) 244, 568
AccB7I CCANNNNNTGG 1 cut(s) 564
AccIII TCCGGA 1 cut(s) 46
AciI CCGC 4 cut(s) 248, 522, 1040, 1059
AcsI RAATTY 2 cut(s) 168, 718
AcvI CACGTG 1 cut(s) 1007
AfaI GTAC 3 cut(s) 142, 826, 1054
AfiI CCNNNNNNNGG 4 cut(s) 283, 508, 564, 1109
AflIII ACRYGT 1 cut(s) 402
AgsI TTSAA 8 cut(s) 37, 61, 135, 238, 482, 551, 701, 1153
AhdI GACNNNNNGTC 1 cut(s) 594
AhlI ACTAGT 2 cut(s) 593, 893
AjnI CCWGG 1 cut(s) 743
AjuI GAANNNNNNNTTGG 2 cut(s) 594, 626
AluBI AGCT 8 cut(s) 73, 208, 264, 370, 610, 868, 926, 1033
AluI AGCT 8 cut(s) 73, 208, 264, 370, 610, 868, 926, 1033
Alw21I GWGCWC 1 cut(s) 266
Alw26I GTCTC 4 cut(s) 433, 548, 602, 1023
Ama87I CYCGRG 1 cut(s) 265
Aor13HI TCCGGA 1 cut(s) 46
AoxI GGCC 3 cut(s) 77, 92, 1117
ApeKI GCWGC 4 cut(s) 176, 691, 865, 944
ApoI RAATTY 2 cut(s) 168, 718
AseI ATTAAT 1 cut(s) 873
Asp700I GAANNNNTTC 2 cut(s) 404, 718
AspA2I CCTAGG 1 cut(s) 89
AspLEI GCGC 1 cut(s) 944
AspS9I GGNCC 3 cut(s) 667, 856, 1118
AsuHPI GGTGA 7 cut(s) 41, 194, 224, 271, 491, 689, 790
AvaI CYCGRG 1 cut(s) 265
AvaII GGWCC 2 cut(s) 667, 856
AvrII CCTAGG 1 cut(s) 89
BaeGI GKGCMC 2 cut(s) 301, 571
BanI GGYRCC 2 cut(s) 244, 568
BanII GRGCYC 1 cut(s) 266
BbrPI CACGTG 1 cut(s) 1007
BbsI GAAGAC 1 cut(s) 779
Bbv12I GWGCWC 1 cut(s) 266
BbvI GCAGC 4 cut(s) 163, 703, 877, 931
BccI CCATC 7 cut(s) 4, 17, 264, 343, 454, 847, 969
BceAI ACGGC 1 cut(s) 435
BciT130I CCWGG 1 cut(s) 745
BcoDI GTCTC 4 cut(s) 433, 548, 602, 1023
BcuI ACTAGT 2 cut(s) 593, 893
BfaI CTAG 5 cut(s) 90, 302, 594, 894, 1104
BfmI CTRYAG 2 cut(s) 729, 931
BfoI RGCGCY 1 cut(s) 945
BfuAI ACCTGC 1 cut(s) 241
BisI GCNGC 6 cut(s) 177, 248, 692, 866, 945, 1060
BlnI CCTAGG 1 cut(s) 89
BlpI GCTNAGC 2 cut(s) 342, 366
BlsI GCNGC 6 cut(s) 178, 249, 693, 867, 946, 1061
BmcAI AGTACT 1 cut(s) 1054
Bme1390I CCNGG 1 cut(s) 745
Bme18I GGWCC 2 cut(s) 667, 856
BmeRI GACNNNNNGTC 1 cut(s) 594
BmeT110I CYCGRG 1 cut(s) 265
BmgT120I GGNCC 3 cut(s) 667, 856, 1118
BmiI GGNNCC 5 cut(s) 246, 275, 416, 570, 668
BmrFI CCNGG 1 cut(s) 745
BmsI GCATC 2 cut(s) 747, 924
BpiI GAAGAC 1 cut(s) 779
BpmI CTGGAG 1 cut(s) 1013
Bpu1102I GCTNAGC 2 cut(s) 342, 366
BsaAI YACGTR 1 cut(s) 1007
BsaI GGTCTC 1 cut(s) 548
BsaJI CCNNGG 1 cut(s) 89
BsaWI WCCGGW 1 cut(s) 46
BsaXI ACNNNNNCTCC 4 cut(s) 133, 163, 883, 913
Bsc4I CCNNNNNNNGG 4 cut(s) 283, 508, 564, 1109
Bse1I ACTGG 2 cut(s) 1120, 1129
BseAI TCCGGA 1 cut(s) 46
BseBI CCWGG 1 cut(s) 745
BseDI CCNNGG 1 cut(s) 89
BseGI GGATG 2 cut(s) 12, 231
BseLI CCNNNNNNNGG 4 cut(s) 283, 508, 564, 1109
BseMII CTCAG 3 cut(s) 333, 380, 925
BseNI ACTGG 2 cut(s) 1120, 1129
BseRI GAGGAG 6 cut(s) 96, 320, 765, 768, 771, 891
BseSI GKGCMC 2 cut(s) 301, 571
BseXI GCAGC 4 cut(s) 163, 703, 877, 931
BseYI CCCAGC 1 cut(s) 208
Bsh1285I CGRYCG 2 cut(s) 67, 958
BshFI GGCC 3 cut(s) 79, 94, 1119
BshNI GGYRCC 2 cut(s) 244, 568
BsiEI CGRYCG 2 cut(s) 67, 958
BsiHKAI GWGCWC 1 cut(s) 266
BsiHKCI CYCGRG 1 cut(s) 265
BsiSI CCGG 2 cut(s) 47, 284
BslFI GGGAC 1 cut(s) 337
BslI CCNNNNNNNGG 4 cut(s) 283, 508, 564, 1109
BsmAI GTCTC 4 cut(s) 433, 548, 602, 1023
BsmFI GGGAC 1 cut(s) 337
BsmI GAATGC 1 cut(s) 745
BsnI GGCC 3 cut(s) 79, 94, 1119
Bso31I GGTCTC 1 cut(s) 548
BsoBI CYCGRG 1 cut(s) 265
Bsp1286I GDGCHC 3 cut(s) 266, 301, 571
Bsp13I TCCGGA 1 cut(s) 46
Bsp143I GATC 5 cut(s) 496, 604, 907, 1012, 1069
Bsp1720I GCTNAGC 2 cut(s) 342, 366
BspACI CCGC 4 cut(s) 248, 522, 1040, 1059
BspANI GGCC 3 cut(s) 79, 94, 1119
BspCNI CTCAG 3 cut(s) 334, 379, 924
BspEI TCCGGA 1 cut(s) 46
BspHI TCATGA 2 cut(s) 790, 904
BspLI GGNNCC 5 cut(s) 246, 275, 416, 570, 668
BspMI ACCTGC 1 cut(s) 241
BspT107I GGYRCC 2 cut(s) 244, 568
BspTNI GGTCTC 1 cut(s) 548
BsrI ACTGG 2 cut(s) 1120, 1129
BssECI CCNNGG 1 cut(s) 89
BssMI GATC 5 cut(s) 496, 604, 907, 1012, 1069
BssT1I CCWWGG 1 cut(s) 89
Bst2UI CCWGG 1 cut(s) 745
Bst6I CTCTTC 1 cut(s) 546
BstAPI GCANNNNNTGC 2 cut(s) 575, 757
BstBAI YACGTR 1 cut(s) 1007
BstDEI CTNAG 5 cut(s) 190, 342, 366, 371, 911
BstF5I GGATG 2 cut(s) 12, 231
BstH2I RGCGCY 1 cut(s) 945
BstHHI GCGC 1 cut(s) 944
BstKTI GATC 5 cut(s) 499, 607, 910, 1015, 1072
BstMAI GTCTC 4 cut(s) 433, 548, 602, 1023
BstMBI GATC 5 cut(s) 496, 604, 907, 1012, 1069
BstMCI CGRYCG 2 cut(s) 67, 958
BstMWI GCNNNNNNNGC 4 cut(s) 352, 575, 757, 1039
BstNI CCWGG 1 cut(s) 745
BstNSI RCATGY 1 cut(s) 149
BstSCI CCNGG 1 cut(s) 743
BstSFI CTRYAG 2 cut(s) 729, 931
BstSLI GKGCMC 2 cut(s) 301, 571
BstV1I GCAGC 4 cut(s) 163, 703, 877, 931
BstV2I GAAGAC 1 cut(s) 779
BsuRI GGCC 3 cut(s) 79, 94, 1119
BtsCI GGATG 2 cut(s) 12, 231
BtsI GCAGTG 1 cut(s) 360
BtsIMutI CAGTG 3 cut(s) 360, 543, 1113
BveI ACCTGC 1 cut(s) 241
CciI TCATGA 2 cut(s) 790, 904
CfoI GCGC 1 cut(s) 944
Cfr13I GGNCC 3 cut(s) 667, 856, 1118
CseI GACGC 1 cut(s) 168
Csp6I GTAC 3 cut(s) 141, 825, 1053
CspCI CAANNNNNGTGG 2 cut(s) 7, 42
CviAII CATG 9 cut(s) 40, 146, 173, 487, 586, 663, 724, 791, 905
CviQI GTAC 3 cut(s) 141, 825, 1053
DdeI CTNAG 5 cut(s) 190, 342, 366, 371, 911
DpnI GATC 5 cut(s) 498, 606, 909, 1014, 1071
DpnII GATC 5 cut(s) 496, 604, 907, 1012, 1069
DriI GACNNNNNGTC 1 cut(s) 594
Eam1104I CTCTTC 1 cut(s) 546
Eam1105I GACNNNNNGTC 1 cut(s) 594
EarI CTCTTC 1 cut(s) 546
Ecl136II GAGCTC 1 cut(s) 264
Eco130I CCWWGG 1 cut(s) 89
Eco147I AGGCCT 1 cut(s) 94
Eco24I GRGCYC 1 cut(s) 266
Eco31I GGTCTC 1 cut(s) 548
Eco47I GGWCC 2 cut(s) 667, 856
Eco53kI GAGCTC 1 cut(s) 264
Eco72I CACGTG 1 cut(s) 1007
Eco88I CYCGRG 1 cut(s) 265
EcoICRI GAGCTC 1 cut(s) 264
EcoRI GAATTC 2 cut(s) 168, 718
EcoRII CCWGG 1 cut(s) 743
EcoT14I CCWWGG 1 cut(s) 89
EcoT38I GRGCYC 1 cut(s) 266
ErhI CCWWGG 1 cut(s) 89
FaeI CATG 9 cut(s) 43, 149, 176, 490, 589, 666, 727, 794, 908
FalI AAGNNNNNCTT 4 cut(s) 594, 626, 1059, 1091
FaqI GGGAC 1 cut(s) 337
FatI CATG 9 cut(s) 39, 145, 172, 486, 585, 662, 723, 790, 904
FauI CCCGC 1 cut(s) 515
Fnu4HI GCNGC 6 cut(s) 177, 248, 692, 866, 945, 1060
FokI GGATG 2 cut(s) 19, 238
FriOI GRGCYC 1 cut(s) 266
Fsp4HI GCNGC 6 cut(s) 177, 248, 692, 866, 945, 1060
FspBI CTAG 5 cut(s) 90, 302, 594, 894, 1104
GlaI GCGC 1 cut(s) 943
GluI GCNGC 6 cut(s) 177, 248, 692, 866, 945, 1060
GsaI CCCAGC 1 cut(s) 212
GsuI CTGGAG 1 cut(s) 1013
HaeII RGCGCY 1 cut(s) 945
HaeIII GGCC 3 cut(s) 79, 94, 1119
HapII CCGG 2 cut(s) 47, 284
HgaI GACGC 1 cut(s) 168
HhaI GCGC 1 cut(s) 944
Hin1II CATG 9 cut(s) 43, 149, 176, 490, 589, 666, 727, 794, 908
Hin6I GCGC 1 cut(s) 942
HinP1I GCGC 1 cut(s) 942
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 6 cut(s) 43, 50, 325, 349, 464, 512
HpaII CCGG 2 cut(s) 47, 284
HphI GGTGA 7 cut(s) 41, 194, 224, 271, 491, 689, 790
Hpy166II GTNNAC 2 cut(s) 143, 215
Hpy188I TCNGA 4 cut(s) 69, 184, 496, 1047
Hpy188III TCNNGA 5 cut(s) 47, 267, 470, 791, 905
Hpy8I GTNNAC 2 cut(s) 143, 215
Hpy99I CGWCG 3 cut(s) 321, 456, 476
HpyAV CCTTC 5 cut(s) 67, 369, 488, 502, 708
HpyCH4IV ACGT 2 cut(s) 402, 1006
HpyCH4V TGCA 4 cut(s) 578, 585, 691, 760
HpyF10VI GCNNNNNNNGC 4 cut(s) 352, 575, 757, 1039
HpyF3I CTNAG 5 cut(s) 190, 342, 366, 371, 911
HpySE526I ACGT 2 cut(s) 402, 1006
Hsp92II CATG 9 cut(s) 43, 149, 176, 490, 589, 666, 727, 794, 908
HspAI GCGC 1 cut(s) 942
Kpn2I TCCGGA 1 cut(s) 46
Kzo9I GATC 5 cut(s) 496, 604, 907, 1012, 1069
LmnI GCTCC 3 cut(s) 154, 641, 931
Lsp1109I GCAGC 4 cut(s) 163, 703, 877, 931
LweI GCATC 2 cut(s) 747, 924
MaeI CTAG 5 cut(s) 90, 302, 594, 894, 1104
MaeII ACGT 2 cut(s) 402, 1006
MaeIII GTNAC 3 cut(s) 14, 29, 983
MalI GATC 5 cut(s) 498, 606, 909, 1014, 1071
MboI GATC 5 cut(s) 496, 604, 907, 1012, 1069
MboII GAAGA 6 cut(s) 563, 695, 779, 1001, 1004, 1007
MhlI GDGCHC 3 cut(s) 266, 301, 571
MluCI AATT 6 cut(s) 168, 562, 671, 686, 718, 1123
MlyI GAGTC 1 cut(s) 319
MmeI TCCRAC 2 cut(s) 47, 991
MroI TCCGGA 1 cut(s) 46
MroXI GAANNNNTTC 2 cut(s) 404, 718
MseI TTAA 2 cut(s) 873, 951
MspA1I CMGCKG 1 cut(s) 208
MspI CCGG 2 cut(s) 47, 284
MspR9I CCNGG 1 cut(s) 745
Mva1269I GAATGC 1 cut(s) 745
MvaI CCWGG 1 cut(s) 745
MwoI GCNNNNNNNGC 4 cut(s) 352, 575, 757, 1039
NdeII GATC 5 cut(s) 496, 604, 907, 1012, 1069
NlaIII CATG 9 cut(s) 43, 149, 176, 490, 589, 666, 727, 794, 908
NlaIV GGNNCC 5 cut(s) 246, 275, 416, 570, 668
NmuCI GTSAC 1 cut(s) 29
NspI RCATGY 1 cut(s) 149
PaeR7I CTCGAG 1 cut(s) 265
PagI TCATGA 2 cut(s) 790, 904
PceI AGGCCT 1 cut(s) 94
PcsI WCGNNNNNNNCGW 1 cut(s) 325
PctI GAATGC 1 cut(s) 745
PdmI GAANNNNTTC 2 cut(s) 404, 718
PfeI GAWTC 5 cut(s) 43, 50, 349, 464, 512
PflMI CCANNNNNTGG 1 cut(s) 564
PkrI GCNGC 6 cut(s) 178, 249, 693, 867, 946, 1061
PleI GAGTC 1 cut(s) 319
PmaCI CACGTG 1 cut(s) 1007
PmlI CACGTG 1 cut(s) 1007
PpsI GAGTC 1 cut(s) 319
Ppu21I YACGTR 1 cut(s) 1007
PshBI ATTAAT 1 cut(s) 873
Psp124BI GAGCTC 1 cut(s) 266
Psp6I CCWGG 1 cut(s) 743
PspCI CACGTG 1 cut(s) 1007
PspFI CCCAGC 1 cut(s) 208
PspGI CCWGG 1 cut(s) 743
PspN4I GGNNCC 5 cut(s) 246, 275, 416, 570, 668
PspPI GGNCC 3 cut(s) 667, 856, 1118
PvuII CAGCTG 1 cut(s) 208
RsaI GTAC 3 cut(s) 142, 826, 1054
RsaNI GTAC 3 cut(s) 141, 825, 1053
SacI GAGCTC 1 cut(s) 266
SaqAI TTAA 2 cut(s) 873, 951
SatI GCNGC 6 cut(s) 177, 248, 692, 866, 945, 1060
Sau3AI GATC 5 cut(s) 496, 604, 907, 1012, 1069
Sau96I GGNCC 3 cut(s) 667, 856, 1118
ScaI AGTACT 1 cut(s) 1054
SchI GAGTC 1 cut(s) 319
ScrFI CCNGG 1 cut(s) 745
SduI GDGCHC 3 cut(s) 266, 301, 571
SfaNI GCATC 2 cut(s) 747, 924
SfcI CTRYAG 2 cut(s) 729, 931
Sfr274I CTCGAG 1 cut(s) 265
SinI GGWCC 2 cut(s) 667, 856
SlaI CTCGAG 1 cut(s) 265
SmlI CTYRAG 1 cut(s) 265
SmoI CTYRAG 1 cut(s) 265
SpeI ACTAGT 2 cut(s) 593, 893
Sse9I AATT 6 cut(s) 168, 562, 671, 686, 718, 1123
SseBI AGGCCT 1 cut(s) 94
SsiI CCGC 4 cut(s) 248, 522, 1040, 1059
SspMI CTAG 5 cut(s) 90, 302, 594, 894, 1104
SstI GAGCTC 1 cut(s) 266
StuI AGGCCT 1 cut(s) 94
StyD4I CCNGG 1 cut(s) 743
StyI CCWWGG 1 cut(s) 89
TaiI ACGT 2 cut(s) 405, 1009
TaqI TCGA 4 cut(s) 166, 266, 316, 328
TasI AATT 6 cut(s) 168, 562, 671, 686, 718, 1123
TatI WGTACW 2 cut(s) 140, 1052
TauI GCSGC 2 cut(s) 250, 1062
TfiI GAWTC 5 cut(s) 43, 50, 349, 464, 512
Tru1I TTAA 2 cut(s) 873, 951
Tru9I TTAA 2 cut(s) 873, 951
TscAI CASTG 3 cut(s) 367, 543, 1120
TseFI GTSAC 1 cut(s) 29
TseI GCWGC 4 cut(s) 176, 691, 865, 944
Tsp45I GTSAC 1 cut(s) 29
TspDTI ATGAA 4 cut(s) 161, 558, 602, 779
TspGWI ACGGA 1 cut(s) 671
TspRI CASTG 3 cut(s) 367, 543, 1120
Van91I CCANNNNNTGG 1 cut(s) 564
VpaK11BI GGWCC 2 cut(s) 667, 856
VspI ATTAAT 1 cut(s) 873
XapI RAATTY 2 cut(s) 168, 718
XceI RCATGY 1 cut(s) 149
XhoI CTCGAG 1 cut(s) 265
XmaJI CCTAGG 1 cut(s) 89
XmnI GAANNNNTTC 2 cut(s) 404, 718
XspI CTAG 5 cut(s) 90, 302, 594, 894, 1104
ZrmI AGTACT 1 cut(s) 1054
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.